Wall clock time and date at job start Tue Mar 31 2020 07:04:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34232 * 117.00013 * 2 1 4 4 O 1.20821 * 120.00103 * 0.02562 * 3 2 1 5 5 C 1.50705 * 119.99869 * 179.97438 * 3 2 1 6 6 H 1.09000 * 109.47197 * 59.99515 * 5 3 2 7 7 N 1.46494 * 109.47108 * 180.02562 * 5 3 2 8 8 C 1.32209 * 119.99860 * 233.87334 * 7 5 3 9 9 C 1.46912 * 120.83319 * 354.40886 * 8 7 5 10 10 C 1.34381 * 119.36999 * 179.72938 * 9 8 7 11 11 N 1.36428 * 121.22077 * 359.97438 * 10 9 8 12 12 H 0.96999 * 119.09118 * 179.97438 * 11 10 9 13 13 C 1.37769 * 121.81875 * 0.02562 * 11 10 9 14 14 C 1.40177 * 119.74373 * 180.02562 * 13 11 10 15 15 H 1.07999 * 120.00300 * 150.47031 * 14 13 11 16 16 C 1.40354 * 119.99787 * 330.46962 * 14 13 11 17 17 N 1.30583 * 120.00439 * 348.72487 * 16 14 13 18 18 Si 1.86803 * 119.99975 * 168.71881 * 16 14 13 19 19 H 1.48506 * 109.47160 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.46968 * 120.00062 * 18 16 14 21 21 H 1.48499 * 109.47300 * 239.99975 * 18 16 14 22 22 C 1.39068 * 120.51346 * 359.97438 * 13 11 10 23 23 C 1.53006 * 109.46999 * 299.99791 * 5 3 2 24 24 C 1.52992 * 109.47325 * 300.00466 * 23 5 3 25 25 C 1.53006 * 109.47061 * 60.00364 * 23 5 3 26 26 C 1.52998 * 109.46835 * 179.97438 * 23 5 3 27 27 H 1.09003 * 109.47231 * 300.00519 * 1 2 3 28 28 H 1.09006 * 109.46959 * 60.00136 * 1 2 3 29 29 H 1.08997 * 109.47082 * 179.97438 * 1 2 3 30 30 H 1.07996 * 120.31877 * 359.75416 * 9 8 7 31 31 H 1.08000 * 119.39097 * 180.02562 * 10 9 8 32 32 H 0.96999 * 120.00331 * 180.02562 * 17 16 14 33 33 H 1.08001 * 120.62712 * 180.02562 * 22 13 11 34 34 H 1.08994 * 109.47718 * 59.99571 * 24 23 5 35 35 H 1.09001 * 109.47315 * 180.02562 * 24 23 5 36 36 H 1.09011 * 109.46956 * 299.99856 * 24 23 5 37 37 H 1.08998 * 109.47131 * 59.99170 * 25 23 5 38 38 H 1.08994 * 109.47050 * 179.97438 * 25 23 5 39 39 H 1.09001 * 109.46649 * 299.99967 * 25 23 5 40 40 H 1.08998 * 109.47291 * 60.00504 * 26 23 5 41 41 H 1.09008 * 109.46806 * 179.97438 * 26 23 5 42 42 H 1.09000 * 109.47349 * 299.99717 * 26 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9564 0.7805 -0.8891 7 7 3.9817 2.6797 0.0011 8 6 4.8169 3.1224 -0.9233 9 6 5.4344 2.1989 -1.8846 10 6 6.2749 2.6814 -2.8155 11 7 6.5646 4.0128 -2.8846 12 1 7.1759 4.3275 -3.5688 13 6 6.0138 4.9224 -2.0086 14 6 6.3415 6.2808 -2.1195 15 1 5.6295 7.0345 -1.8171 16 6 7.5949 6.6615 -2.6234 17 7 8.5339 5.7679 -2.7817 18 14 7.9200 8.4465 -3.0678 19 1 6.7032 9.2536 -2.7969 20 1 9.0477 8.9625 -2.2509 21 1 8.2677 8.5426 -4.5083 22 6 5.1345 4.5036 -1.0160 23 6 4.1129 0.5815 1.2503 24 6 3.5653 1.2753 2.4991 25 6 3.6791 -0.8857 1.2504 26 6 5.6408 0.6610 1.2505 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 5.2148 1.1422 -1.8438 31 1 6.7288 2.0029 -3.5226 32 1 9.4003 6.0311 -3.1295 33 1 4.7013 5.2151 -0.3287 34 1 2.4768 1.2183 2.4987 35 1 3.9550 0.7816 3.3894 36 1 3.8744 2.3206 2.4990 37 1 4.0691 -1.3800 0.3606 38 1 4.0688 -1.3797 2.1404 39 1 2.5905 -0.9427 1.2499 40 1 5.9502 1.7062 1.2502 41 1 6.0301 0.1675 2.1411 42 1 6.0305 0.1664 0.3608 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163509189.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:03 Heat of formation + Delta-G solvation = -70.089977 kcal Electronic energy + Delta-G solvation = -23978.353695 eV Core-core repulsion = 20536.732494 eV Total energy + Delta-G solvation = -3441.621201 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.60195 -40.30715 -38.49837 -37.34620 -35.97379 -34.76475 -32.37548 -30.85874 -29.33295 -28.23794 -28.08963 -27.78074 -26.54266 -23.33320 -22.73812 -21.79886 -20.06264 -19.66968 -18.39543 -18.31878 -17.79461 -17.45995 -16.87194 -16.37723 -16.07879 -15.49982 -15.21034 -14.85702 -14.55258 -14.53976 -14.40624 -14.09674 -13.88038 -13.47562 -13.12848 -13.10102 -13.02364 -12.91839 -12.80038 -12.56069 -12.49011 -12.37057 -12.10219 -11.84808 -11.82490 -11.64482 -11.43707 -11.38527 -11.27522 -10.90869 -9.93972 -9.26574 -8.93632 -7.76351 -6.67097 0.92771 1.02141 1.33667 1.42641 1.53540 1.56744 1.94136 2.17336 2.57911 2.93132 3.46707 3.85156 3.89026 3.97331 4.14122 4.26309 4.31429 4.34704 4.38822 4.50278 4.65753 4.68707 4.80584 4.83803 4.87250 4.93395 4.95275 5.05291 5.07334 5.11990 5.18345 5.26373 5.35319 5.41510 5.52565 5.62635 5.67667 5.80117 5.98906 6.08956 6.39811 6.53955 6.96239 6.98957 7.16787 7.90050 8.08470 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.025306 B = 0.003881 C = 0.003726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.182286 B = 7213.140732 C = 7512.379268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.354 6.354 3 C 0.465 3.535 4 O -0.536 6.536 5 C 0.106 3.894 6 H 0.072 0.928 7 N -0.670 5.670 8 C 0.277 3.723 9 C -0.320 4.320 10 C 0.141 3.859 11 N -0.597 5.597 12 H 0.418 0.582 13 C 0.328 3.672 14 C -0.500 4.500 15 H 0.091 0.909 16 C 0.052 3.948 17 N -0.827 5.827 18 Si 0.993 3.007 19 H -0.265 1.265 20 H -0.267 1.267 21 H -0.253 1.253 22 C -0.391 4.391 23 C -0.053 4.053 24 C -0.123 4.123 25 C -0.143 4.143 26 C -0.123 4.123 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.139 0.861 30 H 0.139 0.861 31 H 0.187 0.813 32 H 0.304 0.696 33 H 0.082 0.918 34 H 0.031 0.969 35 H 0.071 0.929 36 H 0.037 0.963 37 H 0.062 0.938 38 H 0.072 0.928 39 H 0.071 0.929 40 H 0.028 0.972 41 H 0.071 0.929 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.234 -10.898 -1.237 11.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.271 6.271 3 C 0.309 3.691 4 O -0.425 6.425 5 C -0.008 4.008 6 H 0.089 0.911 7 N -0.398 5.398 8 C 0.116 3.884 9 C -0.349 4.349 10 C 0.012 3.988 11 N -0.206 5.206 12 H 0.258 0.742 13 C 0.218 3.782 14 C -0.533 4.533 15 H 0.109 0.891 16 C -0.166 4.166 17 N -0.454 5.454 18 Si 0.813 3.187 19 H -0.189 1.189 20 H -0.192 1.192 21 H -0.177 1.177 22 C -0.420 4.420 23 C -0.054 4.054 24 C -0.180 4.180 25 C -0.201 4.201 26 C -0.180 4.180 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.157 0.843 30 H 0.156 0.844 31 H 0.204 0.796 32 H 0.116 0.884 33 H 0.100 0.900 34 H 0.050 0.950 35 H 0.090 0.910 36 H 0.056 0.944 37 H 0.081 0.919 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.047 0.953 41 H 0.090 0.910 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.799 -10.488 -0.514 10.654 hybrid contribution 0.280 0.777 -0.767 1.127 sum -1.519 -9.711 -1.281 9.913 Atomic orbital electron populations 1.23490 0.76257 1.05531 1.01740 1.86626 1.23952 1.32483 1.84003 1.24636 0.92802 0.80956 0.70739 1.90567 1.67709 1.38086 1.46101 1.21112 0.85558 0.94596 0.99493 0.91066 1.73395 1.27195 1.10659 1.28551 1.20384 0.88227 0.92740 0.87092 1.22350 1.08956 1.00109 1.03486 1.21983 0.94421 0.85012 0.97386 1.42080 1.43184 1.05244 1.30088 0.74191 1.17703 0.86136 0.89168 0.85157 1.19694 1.01628 0.91601 1.40364 0.89092 1.26804 0.93914 1.05226 0.90631 1.69335 1.04934 1.38412 1.32749 0.84956 0.79013 0.75452 0.79233 1.18872 1.19161 1.17742 1.20198 1.19729 0.93503 1.08546 1.20558 0.96151 0.95745 0.92901 1.21656 0.98843 1.00288 0.97259 1.22065 1.02692 0.92729 1.02570 1.21661 0.93594 1.00727 1.02014 0.92797 0.93028 0.84295 0.84388 0.79599 0.88391 0.89964 0.95031 0.90978 0.94399 0.91892 0.90954 0.91030 0.95260 0.90973 0.92378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.56 10.56 113.37 1.20 1.76 16 2 O -0.35 -11.20 7.48 -51.44 -0.38 -11.58 16 3 C 0.47 19.02 5.99 71.24 0.43 19.45 16 4 O -0.54 -26.35 16.18 21.98 0.36 -25.99 16 5 C 0.11 4.28 2.02 44.25 0.09 4.37 16 6 H 0.07 2.75 5.31 -2.39 -0.01 2.74 16 7 N -0.67 -33.25 8.21 -318.14 -2.61 -35.86 16 8 C 0.28 13.78 6.58 42.30 0.28 14.06 16 9 C -0.32 -12.92 9.34 23.66 0.22 -12.70 16 10 C 0.14 5.08 11.15 83.10 0.93 6.00 16 11 N -0.60 -24.95 4.83 -188.18 -0.91 -25.86 16 12 H 0.42 16.37 6.65 -92.71 -0.62 15.75 16 13 C 0.33 16.32 6.29 38.88 0.24 16.56 16 14 C -0.50 -24.31 9.03 23.26 0.21 -24.10 16 15 H 0.09 4.49 7.88 -2.91 -0.02 4.46 16 16 C 0.05 2.20 5.23 85.39 0.45 2.65 16 17 N -0.83 -34.71 11.24 21.89 0.25 -34.46 16 18 Si 0.99 32.87 29.58 68.60 2.03 34.90 16 19 H -0.26 -9.10 7.11 99.48 0.71 -8.39 16 20 H -0.27 -8.68 7.11 99.48 0.71 -7.97 16 21 H -0.25 -7.72 7.11 99.48 0.71 -7.01 16 22 C -0.39 -21.11 9.83 23.41 0.23 -20.88 16 23 C -0.05 -1.76 0.62 -52.18 -0.03 -1.79 16 24 C -0.12 -4.32 8.07 71.98 0.58 -3.74 16 25 C -0.14 -3.67 7.95 71.98 0.57 -3.10 16 26 C -0.12 -3.98 8.30 71.98 0.60 -3.39 16 27 H 0.05 1.35 8.13 -2.39 -0.02 1.33 16 28 H 0.05 1.31 8.13 -2.38 -0.02 1.29 16 29 H 0.14 2.07 8.14 -2.39 -0.02 2.05 16 30 H 0.14 4.86 5.98 -2.91 -0.02 4.84 16 31 H 0.19 4.57 8.06 -2.91 -0.02 4.54 16 32 H 0.30 11.25 8.29 -92.71 -0.77 10.48 16 33 H 0.08 4.80 8.06 -2.91 -0.02 4.78 16 34 H 0.03 1.12 7.22 -2.39 -0.02 1.10 16 35 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.04 1.58 7.60 -2.38 -0.02 1.56 16 37 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.07 1.88 5.32 -2.39 -0.01 1.87 16 40 H 0.03 1.16 7.42 -2.39 -0.02 1.14 16 41 H 0.07 1.94 8.14 -2.38 -0.02 1.92 16 42 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -65.62 342.71 5.13 -60.50 By element: Atomic # 1 Polarization: 42.79 SS G_CDS: 0.41 Total: 43.20 kcal Atomic # 6 Polarization: -10.83 SS G_CDS: 5.99 Total: -4.84 kcal Atomic # 7 Polarization: -92.90 SS G_CDS: -3.27 Total: -96.18 kcal Atomic # 8 Polarization: -37.54 SS G_CDS: -0.03 Total: -37.57 kcal Atomic # 14 Polarization: 32.87 SS G_CDS: 2.03 Total: 34.90 kcal Total: -65.62 5.13 -60.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163509189.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.595 kcal (2) G-P(sol) polarization free energy of solvation -65.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds