Wall clock time and date at job start Tue Mar 31 2020 07:04:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34236 * 116.99815 * 2 1 4 4 O 1.20823 * 120.00176 * 0.02562 * 3 2 1 5 5 C 1.50696 * 119.99743 * 180.02562 * 3 2 1 6 6 H 1.08999 * 109.47407 * 59.99852 * 5 3 2 7 7 N 1.46500 * 109.47091 * 180.02562 * 5 3 2 8 8 C 1.39719 * 119.99939 * 279.38044 * 7 5 3 9 9 C 1.39339 * 120.36494 * 354.96580 * 8 7 5 10 10 N 1.31980 * 121.20908 * 179.97438 * 9 8 7 11 11 C 1.31495 * 122.05923 * 0.02562 * 10 9 8 12 12 C 1.40758 * 120.56657 * 359.96713 * 11 10 9 13 13 C 1.41420 * 120.62533 * 180.02562 * 12 11 10 14 14 H 1.07992 * 120.00378 * 324.69557 * 13 12 11 15 15 C 1.39941 * 119.99898 * 144.70011 * 13 12 11 16 16 N 1.30827 * 119.99939 * 172.51167 * 15 13 12 17 17 Si 1.86801 * 120.00032 * 352.50551 * 15 13 12 18 18 H 1.48497 * 109.46729 * 88.23785 * 17 15 13 19 19 H 1.48501 * 109.46995 * 208.23464 * 17 15 13 20 20 H 1.48502 * 109.47091 * 328.23750 * 17 15 13 21 21 C 1.38662 * 120.36276 * 174.69802 * 8 7 5 22 22 C 1.53001 * 109.47135 * 300.00021 * 5 3 2 23 23 C 1.52994 * 109.47073 * 306.55288 * 22 5 3 24 24 C 1.53006 * 109.47034 * 186.55316 * 22 5 3 25 25 C 1.53000 * 109.47231 * 66.55874 * 22 5 3 26 26 H 1.09004 * 109.47141 * 299.99625 * 1 2 3 27 27 H 1.09004 * 109.47311 * 59.99712 * 1 2 3 28 28 H 1.08995 * 109.47008 * 179.97438 * 1 2 3 29 29 H 0.96994 * 120.00096 * 99.38086 * 7 5 3 30 30 H 1.08003 * 119.39359 * 359.97438 * 9 8 7 31 31 H 1.08003 * 119.71872 * 179.97438 * 11 10 9 32 32 H 0.97000 * 120.00072 * 179.97438 * 16 15 13 33 33 H 1.07993 * 120.92864 * 359.97438 * 21 8 7 34 34 H 1.09002 * 109.47397 * 299.99720 * 23 22 5 35 35 H 1.08994 * 109.47118 * 60.00118 * 23 22 5 36 36 H 1.09005 * 109.47268 * 180.02562 * 23 22 5 37 37 H 1.09000 * 109.47226 * 175.13441 * 24 22 5 38 38 H 1.08998 * 109.46998 * 295.13776 * 24 22 5 39 39 H 1.09003 * 109.47038 * 55.13452 * 24 22 5 40 40 H 1.09003 * 109.46652 * 300.00025 * 25 22 5 41 41 H 1.08997 * 109.47581 * 59.99309 * 25 22 5 42 42 H 1.08997 * 109.47217 * 180.02562 * 25 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5662 1.2749 -0.0006 6 1 3.9556 0.7810 -0.8908 7 7 3.9816 2.6798 0.0002 8 6 3.9901 3.4064 -1.1932 9 6 3.7062 2.7767 -2.4033 10 7 3.7090 3.4469 -3.5402 11 6 3.9779 4.7331 -3.5916 12 6 4.2757 5.4495 -2.4171 13 6 4.5645 6.8329 -2.4708 14 1 5.1042 7.2396 -3.3132 15 6 4.1511 7.6748 -1.4322 16 7 4.5420 8.9230 -1.4071 17 14 3.0409 7.0163 -0.0819 18 1 3.8722 6.4356 1.0030 19 1 2.2165 8.1238 0.4651 20 1 2.1516 5.9663 -0.6403 21 6 4.2756 4.7633 -1.1856 22 6 4.1138 0.5811 1.2483 23 6 3.4428 1.1664 2.4924 24 6 5.6255 0.8015 1.3328 25 6 3.8208 -0.9185 1.1685 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 4.2508 3.1055 0.8291 30 1 3.4797 1.7207 -2.4110 31 1 3.9700 5.2442 -4.5430 32 1 4.2552 9.5067 -0.6874 33 1 4.4947 5.2792 -0.2626 34 1 3.6516 2.2347 2.5493 35 1 2.3659 1.0094 2.4323 36 1 3.8332 0.6724 3.3822 37 1 6.0023 0.3819 2.2655 38 1 6.1120 0.3097 0.4904 39 1 5.8392 1.8699 1.3025 40 1 2.7438 -1.0755 1.1082 41 1 4.2988 -1.3355 0.2821 42 1 4.2105 -1.4127 2.0584 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163509332.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:01 Heat of formation + Delta-G solvation = -60.114501 kcal Electronic energy + Delta-G solvation = -24511.474419 eV Core-core repulsion = 21070.285787 eV Total energy + Delta-G solvation = -3441.188632 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.81472 -38.80539 -37.71345 -36.31948 -34.22814 -33.70997 -31.16829 -29.36730 -28.34943 -27.50740 -27.09642 -26.05030 -25.19036 -22.43873 -21.54198 -20.50364 -19.30149 -17.49556 -17.41629 -17.04950 -16.39684 -16.14364 -15.91231 -15.16577 -14.84317 -14.16872 -14.06806 -13.88659 -13.65398 -13.51585 -12.97968 -12.95005 -12.60140 -12.36797 -12.32898 -12.12322 -12.00117 -11.81056 -11.67723 -11.27129 -11.11709 -10.96982 -10.85327 -10.82173 -10.61710 -10.53880 -10.29878 -9.95793 -9.69933 -9.39136 -8.16812 -7.99551 -6.94375 -6.79386 -4.58154 2.37118 2.46089 2.65007 2.87848 3.09680 3.22978 3.37200 3.76764 3.99269 4.37462 4.58431 4.62399 4.72962 4.95760 5.07643 5.14967 5.19827 5.29678 5.45413 5.46447 5.49952 5.54005 5.64001 5.74663 5.77318 5.86281 5.89731 6.03741 6.13260 6.14004 6.26006 6.29810 6.42030 6.47825 6.79570 6.95847 7.18740 7.51451 7.67192 7.88335 8.01521 8.05355 8.31950 8.53012 8.73450 9.48223 10.08356 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.018183 B = 0.005323 C = 0.005177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.515931 B = 5258.451572 C = 5406.739879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.360 6.360 3 C 0.437 3.563 4 O -0.484 6.484 5 C 0.181 3.819 6 H 0.114 0.886 7 N -0.726 5.726 8 C 0.201 3.799 9 C -0.091 4.091 10 N -0.436 5.436 11 C -0.025 4.025 12 C 0.080 3.920 13 C -0.437 4.437 14 H 0.096 0.904 15 C 0.084 3.916 16 N -0.813 5.813 17 Si 0.915 3.085 18 H -0.273 1.273 19 H -0.294 1.294 20 H -0.243 1.243 21 C -0.269 4.269 22 C -0.068 4.068 23 C -0.148 4.148 24 C -0.139 4.139 25 C -0.149 4.149 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.097 0.903 29 H 0.398 0.602 30 H 0.115 0.885 31 H 0.134 0.866 32 H 0.285 0.715 33 H 0.110 0.890 34 H 0.058 0.942 35 H 0.053 0.947 36 H 0.065 0.935 37 H 0.059 0.941 38 H 0.062 0.938 39 H 0.064 0.936 40 H 0.078 0.922 41 H 0.060 0.940 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.499 -17.304 9.085 19.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.277 6.277 3 C 0.276 3.724 4 O -0.368 6.368 5 C 0.071 3.929 6 H 0.132 0.868 7 N -0.360 5.360 8 C 0.100 3.900 9 C -0.248 4.248 10 N -0.143 5.143 11 C -0.191 4.191 12 C 0.074 3.926 13 C -0.467 4.467 14 H 0.114 0.886 15 C -0.134 4.134 16 N -0.438 5.438 17 Si 0.742 3.258 18 H -0.200 1.200 19 H -0.221 1.221 20 H -0.166 1.166 21 C -0.299 4.299 22 C -0.069 4.069 23 C -0.205 4.205 24 C -0.197 4.197 25 C -0.206 4.206 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.116 0.884 29 H 0.234 0.766 30 H 0.132 0.868 31 H 0.151 0.849 32 H 0.096 0.904 33 H 0.127 0.873 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.096 0.904 41 H 0.079 0.921 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.964 -17.342 8.341 19.471 hybrid contribution -0.535 0.716 1.827 2.034 sum -3.498 -16.626 10.168 19.800 Atomic orbital electron populations 1.23206 0.77454 1.03149 1.02447 1.86571 1.22647 1.33888 1.84546 1.24999 0.93155 0.81486 0.72754 1.90711 1.66566 1.36270 1.43272 1.20425 0.85797 0.85564 1.01143 0.86842 1.44227 1.74313 1.09020 1.08432 1.18466 0.94254 0.91244 0.86044 1.21204 1.18178 0.98371 0.87081 1.66884 1.09381 1.09760 1.28289 1.22498 1.08925 0.89809 0.97846 1.18448 0.88278 0.94533 0.91316 1.19433 1.30946 0.90389 1.05943 0.88576 1.26105 0.95036 0.94545 0.97736 1.69625 1.36645 1.06145 1.31382 0.86292 0.80781 0.78577 0.80127 1.19989 1.22127 1.16574 1.20895 1.18310 0.91760 0.98927 1.20729 0.96836 0.96320 0.92971 1.21969 1.00266 1.01226 0.97043 1.21860 0.92897 1.02813 1.02083 1.22028 1.03654 0.92857 1.02075 0.92340 0.91999 0.88430 0.76625 0.86778 0.84866 0.90407 0.87258 0.92250 0.92806 0.91619 0.92161 0.91937 0.91750 0.90378 0.92062 0.92148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.56 101.05 1.07 1.40 16 2 O -0.36 -4.63 7.79 -39.27 -0.31 -4.94 16 3 C 0.44 6.92 5.51 36.00 0.20 7.12 16 4 O -0.48 -9.71 15.95 -18.75 -0.30 -10.01 16 5 C 0.18 2.57 1.53 -69.08 -0.11 2.47 16 6 H 0.11 1.58 6.55 -51.93 -0.34 1.24 16 7 N -0.73 -12.66 4.04 -53.23 -0.21 -12.87 16 8 C 0.20 4.40 6.33 -83.70 -0.53 3.87 16 9 C -0.09 -2.04 10.31 -17.08 -0.18 -2.22 16 10 N -0.44 -10.61 10.33 -12.37 -0.13 -10.73 16 11 C -0.02 -0.62 10.97 -16.74 -0.18 -0.80 16 12 C 0.08 2.07 5.09 -106.70 -0.54 1.52 16 13 C -0.44 -11.84 9.64 -37.73 -0.36 -12.20 16 14 H 0.10 2.68 8.06 -52.49 -0.42 2.26 16 15 C 0.08 2.23 5.50 -17.34 -0.10 2.14 16 16 N -0.81 -21.81 13.93 55.55 0.77 -21.04 16 17 Si 0.91 21.81 24.44 -169.99 -4.15 17.65 16 18 H -0.27 -6.20 6.57 56.52 0.37 -5.83 16 19 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.24 -6.24 6.73 56.52 0.38 -5.86 16 21 C -0.27 -6.56 6.98 -38.39 -0.27 -6.83 16 22 C -0.07 -0.72 0.57 -154.51 -0.09 -0.81 16 23 C -0.15 -1.57 8.01 37.15 0.30 -1.28 16 24 C -0.14 -1.38 8.32 37.16 0.31 -1.07 16 25 C -0.15 -1.32 8.16 37.16 0.30 -1.02 16 26 H 0.06 0.62 8.13 -51.93 -0.42 0.19 16 27 H 0.06 0.72 8.13 -51.93 -0.42 0.30 16 28 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.40 6.49 6.53 -40.82 -0.27 6.22 16 30 H 0.11 2.30 6.19 -52.48 -0.32 1.97 16 31 H 0.13 3.09 8.06 -52.48 -0.42 2.67 16 32 H 0.29 6.99 8.30 -40.82 -0.34 6.65 16 33 H 0.11 2.63 4.57 -52.49 -0.24 2.39 16 34 H 0.06 0.69 6.91 -51.93 -0.36 0.33 16 35 H 0.05 0.62 7.03 -51.93 -0.37 0.26 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.72 6.78 -51.93 -0.35 0.37 16 40 H 0.08 0.74 5.52 -51.93 -0.29 0.46 16 41 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 333.96 15.07 5.03 5.03 Total: -1.00 -31.19 333.96 -5.42 -36.61 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: -5.95 Total: 8.01 kcal Atomic # 6 Polarization: -7.53 SS G_CDS: -0.18 Total: -7.71 kcal Atomic # 7 Polarization: -45.08 SS G_CDS: 0.43 Total: -44.64 kcal Atomic # 8 Polarization: -14.34 SS G_CDS: -0.60 Total: -14.95 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.15 Total: 17.65 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.19 -5.42 -36.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163509332.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.503 kcal (2) G-P(sol) polarization free energy of solvation -31.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds