Wall clock time and date at job start Tue Mar 31 2020 07:04:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34236 * 116.99815 * 2 1 4 4 O 1.20823 * 120.00176 * 0.02562 * 3 2 1 5 5 C 1.50696 * 119.99743 * 180.02562 * 3 2 1 6 6 H 1.08999 * 109.47407 * 59.99852 * 5 3 2 7 7 N 1.46500 * 109.47091 * 180.02562 * 5 3 2 8 8 C 1.39719 * 119.99939 * 279.38044 * 7 5 3 9 9 C 1.39339 * 120.36494 * 354.96580 * 8 7 5 10 10 N 1.31980 * 121.20908 * 179.97438 * 9 8 7 11 11 C 1.31495 * 122.05923 * 0.02562 * 10 9 8 12 12 C 1.40758 * 120.56657 * 359.96713 * 11 10 9 13 13 C 1.41420 * 120.62533 * 180.02562 * 12 11 10 14 14 H 1.07992 * 120.00378 * 324.69557 * 13 12 11 15 15 C 1.39941 * 119.99898 * 144.70011 * 13 12 11 16 16 N 1.30827 * 119.99939 * 172.51167 * 15 13 12 17 17 Si 1.86801 * 120.00032 * 352.50551 * 15 13 12 18 18 H 1.48497 * 109.46729 * 88.23785 * 17 15 13 19 19 H 1.48501 * 109.46995 * 208.23464 * 17 15 13 20 20 H 1.48502 * 109.47091 * 328.23750 * 17 15 13 21 21 C 1.38662 * 120.36276 * 174.69802 * 8 7 5 22 22 C 1.53001 * 109.47135 * 300.00021 * 5 3 2 23 23 C 1.52994 * 109.47073 * 306.55288 * 22 5 3 24 24 C 1.53006 * 109.47034 * 186.55316 * 22 5 3 25 25 C 1.53000 * 109.47231 * 66.55874 * 22 5 3 26 26 H 1.09004 * 109.47141 * 299.99625 * 1 2 3 27 27 H 1.09004 * 109.47311 * 59.99712 * 1 2 3 28 28 H 1.08995 * 109.47008 * 179.97438 * 1 2 3 29 29 H 0.96994 * 120.00096 * 99.38086 * 7 5 3 30 30 H 1.08003 * 119.39359 * 359.97438 * 9 8 7 31 31 H 1.08003 * 119.71872 * 179.97438 * 11 10 9 32 32 H 0.97000 * 120.00072 * 179.97438 * 16 15 13 33 33 H 1.07993 * 120.92864 * 359.97438 * 21 8 7 34 34 H 1.09002 * 109.47397 * 299.99720 * 23 22 5 35 35 H 1.08994 * 109.47118 * 60.00118 * 23 22 5 36 36 H 1.09005 * 109.47268 * 180.02562 * 23 22 5 37 37 H 1.09000 * 109.47226 * 175.13441 * 24 22 5 38 38 H 1.08998 * 109.46998 * 295.13776 * 24 22 5 39 39 H 1.09003 * 109.47038 * 55.13452 * 24 22 5 40 40 H 1.09003 * 109.46652 * 300.00025 * 25 22 5 41 41 H 1.08997 * 109.47581 * 59.99309 * 25 22 5 42 42 H 1.08997 * 109.47217 * 180.02562 * 25 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5662 1.2749 -0.0006 6 1 3.9556 0.7810 -0.8908 7 7 3.9816 2.6798 0.0002 8 6 3.9901 3.4064 -1.1932 9 6 3.7062 2.7767 -2.4033 10 7 3.7090 3.4469 -3.5402 11 6 3.9779 4.7331 -3.5916 12 6 4.2757 5.4495 -2.4171 13 6 4.5645 6.8329 -2.4708 14 1 5.1042 7.2396 -3.3132 15 6 4.1511 7.6748 -1.4322 16 7 4.5420 8.9230 -1.4071 17 14 3.0409 7.0163 -0.0819 18 1 3.8722 6.4356 1.0030 19 1 2.2165 8.1238 0.4651 20 1 2.1516 5.9663 -0.6403 21 6 4.2756 4.7633 -1.1856 22 6 4.1138 0.5811 1.2483 23 6 3.4428 1.1664 2.4924 24 6 5.6255 0.8015 1.3328 25 6 3.8208 -0.9185 1.1685 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 4.2508 3.1055 0.8291 30 1 3.4797 1.7207 -2.4110 31 1 3.9700 5.2442 -4.5430 32 1 4.2552 9.5067 -0.6874 33 1 4.4947 5.2792 -0.2626 34 1 3.6516 2.2347 2.5493 35 1 2.3659 1.0094 2.4323 36 1 3.8332 0.6724 3.3822 37 1 6.0023 0.3819 2.2655 38 1 6.1120 0.3097 0.4904 39 1 5.8392 1.8699 1.3025 40 1 2.7438 -1.0755 1.1082 41 1 4.2988 -1.3355 0.2821 42 1 4.2105 -1.4127 2.0584 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163509332.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:00 Heat of formation + Delta-G solvation = -80.062200 kcal Electronic energy + Delta-G solvation = -24512.339416 eV Core-core repulsion = 21070.285787 eV Total energy + Delta-G solvation = -3442.053629 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.03467 -40.51717 -38.89278 -37.53551 -35.93406 -35.43046 -33.11179 -30.80865 -29.51102 -28.32279 -27.89582 -27.63245 -26.75860 -24.30953 -22.92076 -22.07231 -20.36609 -19.37874 -18.70599 -18.31007 -17.92614 -17.47712 -17.45303 -16.67357 -16.52888 -15.79472 -15.07226 -15.00675 -14.91702 -14.68907 -14.56938 -14.41282 -14.01201 -13.94302 -13.58667 -13.22275 -13.17814 -13.05793 -12.83727 -12.78196 -12.57921 -12.29291 -12.03806 -11.99864 -11.85958 -11.79066 -11.70510 -11.59399 -11.38381 -11.15609 -10.09124 -9.94806 -8.93932 -8.47975 -6.64022 0.63497 0.79630 1.14107 1.16805 1.30105 1.42323 1.65806 2.05041 2.38806 2.63320 3.41081 3.48412 3.68760 3.76007 3.98802 4.05607 4.23998 4.27503 4.30222 4.33216 4.35812 4.52372 4.54122 4.66938 4.72335 4.75548 4.91062 4.91472 4.99960 5.05451 5.08228 5.14824 5.25435 5.31701 5.34093 5.39894 5.57561 5.65305 5.75117 6.06281 6.32315 6.42398 6.69334 6.70896 6.76241 7.56293 8.13851 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.018183 B = 0.005323 C = 0.005177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.515931 B = 5258.451572 C = 5406.739879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.348 6.348 3 C 0.442 3.558 4 O -0.533 6.533 5 C 0.172 3.828 6 H 0.124 0.876 7 N -0.717 5.717 8 C 0.211 3.789 9 C -0.085 4.085 10 N -0.443 5.443 11 C -0.047 4.047 12 C 0.068 3.932 13 C -0.466 4.466 14 H 0.071 0.929 15 C 0.056 3.944 16 N -0.845 5.845 17 Si 0.964 3.036 18 H -0.254 1.254 19 H -0.280 1.280 20 H -0.273 1.273 21 C -0.282 4.282 22 C -0.059 4.059 23 C -0.148 4.148 24 C -0.138 4.138 25 C -0.145 4.145 26 H 0.057 0.943 27 H 0.048 0.952 28 H 0.139 0.861 29 H 0.404 0.596 30 H 0.143 0.857 31 H 0.139 0.861 32 H 0.295 0.705 33 H 0.111 0.889 34 H 0.045 0.955 35 H 0.041 0.959 36 H 0.090 0.910 37 H 0.082 0.918 38 H 0.066 0.934 39 H 0.048 0.952 40 H 0.072 0.928 41 H 0.068 0.932 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.701 -20.605 11.127 23.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.263 6.263 3 C 0.283 3.717 4 O -0.421 6.421 5 C 0.064 3.936 6 H 0.141 0.859 7 N -0.349 5.349 8 C 0.108 3.892 9 C -0.245 4.245 10 N -0.150 5.150 11 C -0.211 4.211 12 C 0.063 3.937 13 C -0.497 4.497 14 H 0.089 0.911 15 C -0.159 4.159 16 N -0.472 5.472 17 Si 0.790 3.210 18 H -0.179 1.179 19 H -0.207 1.207 20 H -0.198 1.198 21 C -0.312 4.312 22 C -0.060 4.060 23 C -0.205 4.205 24 C -0.195 4.195 25 C -0.202 4.202 26 H 0.076 0.924 27 H 0.067 0.933 28 H 0.157 0.843 29 H 0.241 0.759 30 H 0.160 0.840 31 H 0.157 0.843 32 H 0.106 0.894 33 H 0.129 0.871 34 H 0.064 0.936 35 H 0.060 0.940 36 H 0.109 0.891 37 H 0.101 0.899 38 H 0.085 0.915 39 H 0.067 0.933 40 H 0.090 0.910 41 H 0.087 0.913 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.150 -20.671 10.405 23.356 hybrid contribution -0.533 1.455 1.201 1.960 sum -3.683 -19.216 11.606 22.749 Atomic orbital electron populations 1.23509 0.75880 1.05666 1.01804 1.86572 1.24067 1.32021 1.83671 1.25172 0.93594 0.81520 0.71370 1.90707 1.67663 1.37933 1.45846 1.20838 0.85230 0.83815 1.03731 0.85902 1.44282 1.73267 1.10208 1.07145 1.18466 0.92399 0.90722 0.87663 1.21733 1.16390 0.99541 0.86806 1.66921 1.09405 1.09461 1.29254 1.22594 1.10127 0.90300 0.98045 1.18537 0.88536 0.94215 0.92434 1.19395 1.32805 0.91420 1.06077 0.91076 1.26580 0.95682 0.94619 0.99015 1.69635 1.38066 1.06848 1.32642 0.85543 0.79159 0.77574 0.78718 1.17908 1.20655 1.19763 1.21003 1.18763 0.92969 0.98432 1.20766 0.97166 0.97184 0.90869 1.21992 0.99652 1.00717 0.98172 1.21866 0.92123 1.01988 1.03543 1.22019 1.03461 0.91163 1.03580 0.92429 0.93307 0.84303 0.75879 0.84009 0.84336 0.89439 0.87095 0.93589 0.93956 0.89066 0.89898 0.91531 0.93339 0.90960 0.91282 0.90013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.46 10.56 113.37 1.20 1.66 16 2 O -0.35 -7.99 7.79 -51.47 -0.40 -8.39 16 3 C 0.44 13.10 5.51 71.23 0.39 13.49 16 4 O -0.53 -20.88 15.95 21.97 0.35 -20.53 16 5 C 0.17 4.47 1.53 44.24 0.07 4.54 16 6 H 0.12 3.00 6.55 -2.39 -0.02 2.99 16 7 N -0.72 -23.69 4.04 -322.32 -1.30 -24.99 16 8 C 0.21 9.02 6.33 38.25 0.24 9.26 16 9 C -0.09 -3.71 10.31 84.94 0.88 -2.83 16 10 N -0.44 -21.36 10.33 -193.05 -1.99 -23.35 16 11 C -0.05 -2.36 10.97 85.36 0.94 -1.43 16 12 C 0.07 3.60 5.09 -21.21 -0.11 3.49 16 13 C -0.47 -26.32 9.64 23.47 0.23 -26.09 16 14 H 0.07 4.23 8.06 -2.91 -0.02 4.21 16 15 C 0.06 3.05 5.50 85.26 0.47 3.52 16 16 N -0.85 -46.39 13.93 21.83 0.30 -46.09 16 17 Si 0.96 45.39 24.44 68.60 1.68 47.06 16 18 H -0.25 -10.99 6.57 99.48 0.65 -10.34 16 19 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 20 H -0.27 -14.12 6.73 99.48 0.67 -13.45 16 21 C -0.28 -13.71 6.98 23.04 0.16 -13.55 16 22 C -0.06 -1.06 0.57 -52.18 -0.03 -1.09 16 23 C -0.15 -2.72 8.01 71.98 0.58 -2.15 16 24 C -0.14 -2.25 8.32 71.98 0.60 -1.65 16 25 C -0.15 -1.96 8.16 71.98 0.59 -1.37 16 26 H 0.06 1.11 8.13 -2.38 -0.02 1.09 16 27 H 0.05 1.06 8.13 -2.38 -0.02 1.04 16 28 H 0.14 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.40 12.50 6.53 -92.71 -0.61 11.89 16 30 H 0.14 5.32 6.19 -2.91 -0.02 5.30 16 31 H 0.14 6.67 8.06 -2.91 -0.02 6.65 16 32 H 0.29 14.60 8.30 -92.71 -0.77 13.83 16 33 H 0.11 5.30 4.57 -2.91 -0.01 5.28 16 34 H 0.05 0.96 6.91 -2.39 -0.02 0.95 16 35 H 0.04 0.87 7.03 -2.39 -0.02 0.86 16 36 H 0.09 1.21 8.14 -2.38 -0.02 1.19 16 37 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.05 0.95 6.78 -2.39 -0.02 0.94 16 40 H 0.07 1.09 5.52 -2.39 -0.01 1.07 16 41 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 Total: -1.00 -68.81 333.96 5.17 -63.64 By element: Atomic # 1 Polarization: 26.50 SS G_CDS: 0.34 Total: 26.84 kcal Atomic # 6 Polarization: -20.39 SS G_CDS: 6.19 Total: -14.20 kcal Atomic # 7 Polarization: -91.44 SS G_CDS: -2.99 Total: -94.43 kcal Atomic # 8 Polarization: -28.88 SS G_CDS: -0.05 Total: -28.93 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 1.68 Total: 47.06 kcal Total: -68.81 5.17 -63.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163509332.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.419 kcal (2) G-P(sol) polarization free energy of solvation -68.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds