Wall clock time and date at job start Tue Mar 31 2020 07:19:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35621 * 116.99905 * 2 1 4 4 C 1.39161 * 120.50165 * 0.23451 * 3 2 1 5 5 C 1.38305 * 118.62639 * 180.27336 * 4 3 2 6 6 C 1.39947 * 119.59430 * 359.74040 * 5 4 3 7 7 N 1.38904 * 119.49532 * 179.97438 * 6 5 4 8 8 C 1.46506 * 120.00236 * 0.02562 * 7 6 5 9 9 C 1.50698 * 109.47283 * 180.02562 * 8 7 6 10 10 O 1.20758 * 119.99975 * 0.02562 * 9 8 7 11 11 C 1.50697 * 119.99822 * 179.97438 * 9 8 7 12 12 C 1.53001 * 109.47304 * 180.02562 * 11 9 8 13 13 C 1.52990 * 109.47513 * 300.00367 * 11 9 8 14 14 C 1.53004 * 109.47111 * 60.00354 * 11 9 8 15 15 N 1.31862 * 121.01049 * 0.02562 * 6 5 4 16 16 C 1.33829 * 121.47124 * 359.97438 * 15 6 5 17 17 C 1.40912 * 119.84965 * 179.97438 * 16 15 6 18 18 H 1.08004 * 119.99908 * 170.16173 * 17 16 15 19 19 C 1.40025 * 119.99865 * 349.89443 * 17 16 15 20 20 N 1.30779 * 120.00010 * 164.16703 * 19 17 16 21 21 Si 1.86799 * 120.00001 * 344.15695 * 19 17 16 22 22 H 1.48500 * 109.47010 * 90.00404 * 21 19 17 23 23 H 1.48504 * 109.47421 * 210.00436 * 21 19 17 24 24 H 1.48498 * 109.47096 * 330.00457 * 21 19 17 25 25 H 1.08998 * 109.47118 * 60.00396 * 1 2 3 26 26 H 1.09003 * 109.46781 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47105 * 299.99849 * 1 2 3 28 28 H 1.08000 * 120.68680 * 359.97438 * 4 3 2 29 29 H 1.07998 * 120.20643 * 179.72650 * 5 4 3 30 30 H 0.97001 * 120.00158 * 180.02562 * 7 6 5 31 31 H 1.09001 * 109.46926 * 300.00868 * 8 7 6 32 32 H 1.09001 * 109.46844 * 60.00029 * 8 7 6 33 33 H 1.08999 * 109.46812 * 59.99935 * 12 11 9 34 34 H 1.08993 * 109.47303 * 180.02562 * 12 11 9 35 35 H 1.09001 * 109.47091 * 300.00489 * 12 11 9 36 36 H 1.09004 * 109.47654 * 60.00108 * 13 11 9 37 37 H 1.09003 * 109.47786 * 179.97438 * 13 11 9 38 38 H 1.09000 * 109.47480 * 299.99885 * 13 11 9 39 39 H 1.09001 * 109.46969 * 59.99704 * 14 11 9 40 40 H 1.08999 * 109.47303 * 179.97438 * 14 11 9 41 41 H 1.09002 * 109.47022 * 300.00001 * 14 11 9 42 42 H 0.96998 * 120.00293 * 2.91311 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2084 0.0000 4 6 1.2970 2.3821 0.0049 5 6 1.9648 3.5932 -0.0011 6 6 3.3642 3.6108 -0.0063 7 7 4.0328 4.8283 -0.0128 8 6 3.2733 6.0812 -0.0137 9 6 4.2279 7.2473 -0.0218 10 8 5.4196 7.0520 -0.0270 11 6 3.6953 8.6570 -0.0248 12 6 4.8644 9.6439 -0.0338 13 6 2.8351 8.8746 -1.2711 14 6 2.8455 8.8837 1.2272 15 7 4.0577 2.4893 -0.0061 16 6 3.4544 1.2947 -0.0005 17 6 4.2291 0.1177 -0.0010 18 1 3.7569 -0.8397 0.1633 19 6 5.6103 0.1887 -0.2202 20 7 6.3731 -0.8304 0.0794 21 14 6.3631 1.7391 -0.9407 22 1 6.7410 2.6629 0.1588 23 1 7.5722 1.3835 -1.7260 24 1 5.3745 2.4034 -1.8276 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 0.2176 2.3479 0.0084 29 1 1.4099 4.5197 -0.0019 30 1 5.0026 4.8491 -0.0169 31 1 2.6419 6.1226 -0.9011 32 1 2.6493 6.1283 0.8788 33 1 5.4694 9.4822 -0.9260 34 1 4.4791 10.6635 -0.0355 35 1 5.4775 9.4890 0.8539 36 1 2.0021 8.1716 -1.2651 37 1 2.4495 9.8942 -1.2730 38 1 3.4404 8.7132 -2.1631 39 1 3.4583 8.7286 2.1152 40 1 2.4606 9.9035 1.2254 41 1 2.0126 8.1806 1.2333 42 1 5.9777 -1.6506 0.4137 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001164002674.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:05 Heat of formation + Delta-G solvation = -58.663660 kcal Electronic energy + Delta-G solvation = -23500.393323 eV Core-core repulsion = 20059.267604 eV Total energy + Delta-G solvation = -3441.125719 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.27437 -39.09995 -37.16342 -35.98193 -34.82890 -33.36194 -30.87811 -29.73182 -27.85311 -27.64526 -26.90318 -26.21512 -24.97456 -22.75066 -21.66271 -20.32463 -18.73100 -18.24192 -17.06192 -16.78385 -16.21131 -15.52632 -15.34862 -15.19818 -14.80163 -14.29149 -14.06182 -13.83179 -13.74701 -13.47172 -13.04387 -12.79653 -12.51093 -12.43789 -12.33473 -12.30005 -12.10375 -12.05857 -11.95637 -11.71953 -11.23274 -11.14794 -10.85547 -10.70569 -10.53611 -10.08409 -9.61632 -9.56818 -9.11330 -8.70671 -8.47551 -7.83940 -7.24388 -6.59176 -4.58009 1.83208 2.61056 2.82580 3.46921 3.62525 3.70839 3.97654 4.12373 4.39410 4.42267 4.50274 4.56522 4.65797 4.67757 5.19324 5.28365 5.33865 5.38260 5.41416 5.46918 5.54795 5.58097 5.60195 5.65948 5.66670 5.75182 5.77521 5.84536 5.94595 5.95012 6.00647 6.14271 6.38310 6.49625 6.99410 7.17338 7.36537 7.40432 7.55635 7.86857 8.04855 8.14845 8.42275 8.55072 8.87752 9.62313 10.02902 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.016425 B = 0.004783 C = 0.003835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.306979 B = 5852.166898 C = 7299.019940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.310 6.310 3 C -0.065 4.065 4 C -0.103 4.103 5 C -0.347 4.347 6 C 0.419 3.581 7 N -0.737 5.737 8 C 0.090 3.910 9 C 0.357 3.643 10 O -0.440 6.440 11 C -0.111 4.111 12 C -0.134 4.134 13 C -0.141 4.141 14 C -0.140 4.140 15 N -0.599 5.599 16 C 0.283 3.717 17 C -0.457 4.457 18 H 0.091 0.909 19 C 0.050 3.950 20 N -0.798 5.798 21 Si 1.141 2.859 22 H -0.285 1.285 23 H -0.327 1.327 24 H -0.280 1.280 25 H 0.039 0.961 26 H 0.082 0.918 27 H 0.038 0.962 28 H 0.106 0.894 29 H 0.100 0.900 30 H 0.403 0.597 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.061 0.939 39 H 0.060 0.940 40 H 0.068 0.932 41 H 0.067 0.933 42 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.131 16.857 -0.457 19.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.223 6.223 3 C -0.112 4.112 4 C -0.127 4.127 5 C -0.374 4.374 6 C 0.184 3.816 7 N -0.377 5.377 8 C -0.036 4.036 9 C 0.231 3.769 10 O -0.312 6.312 11 C -0.113 4.113 12 C -0.191 4.191 13 C -0.198 4.198 14 C -0.198 4.198 15 N -0.328 5.328 16 C 0.158 3.842 17 C -0.489 4.489 18 H 0.109 0.891 19 C -0.172 4.172 20 N -0.419 5.419 21 Si 0.974 3.026 22 H -0.212 1.212 23 H -0.260 1.260 24 H -0.207 1.207 25 H 0.058 0.942 26 H 0.100 0.900 27 H 0.057 0.943 28 H 0.124 0.876 29 H 0.118 0.882 30 H 0.241 0.759 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.288 17.227 -0.831 18.358 hybrid contribution -2.605 -0.663 0.611 2.756 sum -8.892 16.564 -0.220 18.801 Atomic orbital electron populations 1.22726 0.81722 1.01839 0.99779 1.85939 1.18180 1.27529 1.90699 1.19711 0.92915 0.83410 1.15193 1.20736 0.97626 0.92120 1.02262 1.20170 0.91851 0.96767 1.28565 1.17963 0.88142 0.84780 0.90702 1.43937 1.08622 1.00998 1.84142 1.21456 0.94960 0.83797 1.03418 1.24820 0.89834 0.91854 0.70393 1.90396 1.18502 1.87583 1.34683 1.21145 0.98031 0.93805 0.98296 1.21722 0.96686 0.97611 1.03106 1.21867 0.99372 1.02864 0.95688 1.21867 0.99454 1.02838 0.95620 1.66404 1.36913 0.96787 1.32724 1.17661 0.86575 0.90059 0.89939 1.20650 0.94319 0.93771 1.40146 0.89091 1.27716 0.94152 1.04181 0.91192 1.70631 1.39759 1.04299 1.27257 0.82149 0.72099 0.71496 0.76877 1.21187 1.26011 1.20670 0.94246 0.89954 0.94322 0.87631 0.88177 0.75940 0.89185 0.89178 0.92006 0.91964 0.92027 0.91448 0.91309 0.92037 0.92059 0.91311 0.91443 0.90359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.59 9.83 101.05 0.99 1.59 16 2 O -0.31 -7.17 9.64 -18.56 -0.18 -7.34 16 3 C -0.06 -1.60 6.74 -38.10 -0.26 -1.86 16 4 C -0.10 -2.22 9.12 -39.21 -0.36 -2.58 16 5 C -0.35 -7.27 9.33 -38.92 -0.36 -7.64 16 6 C 0.42 9.65 7.65 -155.27 -1.19 8.47 16 7 N -0.74 -14.44 5.70 -61.52 -0.35 -14.79 16 8 C 0.09 1.25 4.63 -5.19 -0.02 1.23 16 9 C 0.36 4.62 6.04 -29.04 -0.18 4.44 16 10 O -0.44 -7.25 15.29 6.00 0.09 -7.15 16 11 C -0.11 -1.01 0.87 -155.66 -0.14 -1.15 16 12 C -0.13 -1.21 7.76 37.16 0.29 -0.92 16 13 C -0.14 -1.04 8.25 37.15 0.31 -0.73 16 14 C -0.14 -1.04 8.26 37.16 0.31 -0.73 16 15 N -0.60 -15.81 5.13 -10.20 -0.05 -15.87 16 16 C 0.28 7.74 6.26 -84.85 -0.53 7.20 16 17 C -0.46 -12.99 9.28 -37.90 -0.35 -13.35 16 18 H 0.09 2.64 7.57 -52.48 -0.40 2.24 16 19 C 0.05 1.41 5.51 -17.33 -0.10 1.31 16 20 N -0.80 -22.29 13.65 55.55 0.76 -21.53 16 21 Si 1.14 29.25 25.92 -169.99 -4.41 24.84 16 22 H -0.28 -7.29 7.11 56.52 0.40 -6.88 16 23 H -0.33 -8.20 7.11 56.52 0.40 -7.80 16 24 H -0.28 -7.26 6.58 56.52 0.37 -6.89 16 25 H 0.04 0.60 7.70 -51.93 -0.40 0.20 16 26 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 27 H 0.04 0.59 7.68 -51.93 -0.40 0.19 16 28 H 0.11 1.92 6.43 -52.49 -0.34 1.59 16 29 H 0.10 1.74 6.67 -52.49 -0.35 1.39 16 30 H 0.40 8.41 7.56 -40.82 -0.31 8.11 16 31 H 0.09 1.12 7.15 -51.93 -0.37 0.75 16 32 H 0.09 1.11 7.15 -51.93 -0.37 0.74 16 33 H 0.06 0.61 8.10 -51.93 -0.42 0.19 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.06 0.61 8.10 -51.93 -0.42 0.19 16 36 H 0.07 0.46 7.28 -51.93 -0.38 0.08 16 37 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 41 H 0.07 0.46 7.28 -51.93 -0.38 0.08 16 42 H 0.29 7.63 8.72 -40.82 -0.36 7.27 16 LS Contribution 341.91 15.07 5.15 5.15 Total: -1.00 -32.33 341.91 -6.82 -39.15 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -6.25 Total: 2.25 kcal Atomic # 6 Polarization: -3.13 SS G_CDS: -1.58 Total: -4.71 kcal Atomic # 7 Polarization: -52.54 SS G_CDS: 0.36 Total: -52.19 kcal Atomic # 8 Polarization: -14.41 SS G_CDS: -0.09 Total: -14.50 kcal Atomic # 14 Polarization: 29.25 SS G_CDS: -4.41 Total: 24.84 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.33 -6.82 -39.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164002674.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.513 kcal (2) G-P(sol) polarization free energy of solvation -32.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds