Wall clock time and date at job start Tue Mar 31 2020 07:19:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35621 * 116.99905 * 2 1 4 4 C 1.39161 * 120.50165 * 0.23451 * 3 2 1 5 5 C 1.38305 * 118.62639 * 180.27336 * 4 3 2 6 6 C 1.39947 * 119.59430 * 359.74040 * 5 4 3 7 7 N 1.38904 * 119.49532 * 179.97438 * 6 5 4 8 8 C 1.46506 * 120.00236 * 0.02562 * 7 6 5 9 9 C 1.50698 * 109.47283 * 180.02562 * 8 7 6 10 10 O 1.20758 * 119.99975 * 0.02562 * 9 8 7 11 11 C 1.50697 * 119.99822 * 179.97438 * 9 8 7 12 12 C 1.53001 * 109.47304 * 180.02562 * 11 9 8 13 13 C 1.52990 * 109.47513 * 300.00367 * 11 9 8 14 14 C 1.53004 * 109.47111 * 60.00354 * 11 9 8 15 15 N 1.31862 * 121.01049 * 0.02562 * 6 5 4 16 16 C 1.33829 * 121.47124 * 359.97438 * 15 6 5 17 17 C 1.40912 * 119.84965 * 179.97438 * 16 15 6 18 18 H 1.08004 * 119.99908 * 170.16173 * 17 16 15 19 19 C 1.40025 * 119.99865 * 349.89443 * 17 16 15 20 20 N 1.30779 * 120.00010 * 164.16703 * 19 17 16 21 21 Si 1.86799 * 120.00001 * 344.15695 * 19 17 16 22 22 H 1.48500 * 109.47010 * 90.00404 * 21 19 17 23 23 H 1.48504 * 109.47421 * 210.00436 * 21 19 17 24 24 H 1.48498 * 109.47096 * 330.00457 * 21 19 17 25 25 H 1.08998 * 109.47118 * 60.00396 * 1 2 3 26 26 H 1.09003 * 109.46781 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47105 * 299.99849 * 1 2 3 28 28 H 1.08000 * 120.68680 * 359.97438 * 4 3 2 29 29 H 1.07998 * 120.20643 * 179.72650 * 5 4 3 30 30 H 0.97001 * 120.00158 * 180.02562 * 7 6 5 31 31 H 1.09001 * 109.46926 * 300.00868 * 8 7 6 32 32 H 1.09001 * 109.46844 * 60.00029 * 8 7 6 33 33 H 1.08999 * 109.46812 * 59.99935 * 12 11 9 34 34 H 1.08993 * 109.47303 * 180.02562 * 12 11 9 35 35 H 1.09001 * 109.47091 * 300.00489 * 12 11 9 36 36 H 1.09004 * 109.47654 * 60.00108 * 13 11 9 37 37 H 1.09003 * 109.47786 * 179.97438 * 13 11 9 38 38 H 1.09000 * 109.47480 * 299.99885 * 13 11 9 39 39 H 1.09001 * 109.46969 * 59.99704 * 14 11 9 40 40 H 1.08999 * 109.47303 * 179.97438 * 14 11 9 41 41 H 1.09002 * 109.47022 * 300.00001 * 14 11 9 42 42 H 0.96998 * 120.00293 * 2.91311 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2084 0.0000 4 6 1.2970 2.3821 0.0049 5 6 1.9648 3.5932 -0.0011 6 6 3.3642 3.6108 -0.0063 7 7 4.0328 4.8283 -0.0128 8 6 3.2733 6.0812 -0.0137 9 6 4.2279 7.2473 -0.0218 10 8 5.4196 7.0520 -0.0270 11 6 3.6953 8.6570 -0.0248 12 6 4.8644 9.6439 -0.0338 13 6 2.8351 8.8746 -1.2711 14 6 2.8455 8.8837 1.2272 15 7 4.0577 2.4893 -0.0061 16 6 3.4544 1.2947 -0.0005 17 6 4.2291 0.1177 -0.0010 18 1 3.7569 -0.8397 0.1633 19 6 5.6103 0.1887 -0.2202 20 7 6.3731 -0.8304 0.0794 21 14 6.3631 1.7391 -0.9407 22 1 6.7410 2.6629 0.1588 23 1 7.5722 1.3835 -1.7260 24 1 5.3745 2.4034 -1.8276 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 0.2176 2.3479 0.0084 29 1 1.4099 4.5197 -0.0019 30 1 5.0026 4.8491 -0.0169 31 1 2.6419 6.1226 -0.9011 32 1 2.6493 6.1283 0.8788 33 1 5.4694 9.4822 -0.9260 34 1 4.4791 10.6635 -0.0355 35 1 5.4775 9.4890 0.8539 36 1 2.0021 8.1716 -1.2651 37 1 2.4495 9.8942 -1.2730 38 1 3.4404 8.7132 -2.1631 39 1 3.4583 8.7286 2.1152 40 1 2.4606 9.9035 1.2254 41 1 2.0126 8.1806 1.2333 42 1 5.9777 -1.6506 0.4137 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001164002674.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:04 Heat of formation + Delta-G solvation = -79.857940 kcal Electronic energy + Delta-G solvation = -23501.312376 eV Core-core repulsion = 20059.267604 eV Total energy + Delta-G solvation = -3442.044772 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.37716 -40.80385 -38.81585 -36.80158 -36.51378 -35.20782 -32.71975 -31.32565 -28.99231 -28.17948 -28.06959 -27.53950 -26.70474 -23.83149 -23.44164 -22.00838 -20.37810 -19.66151 -18.52200 -18.31961 -17.54390 -16.71079 -16.60063 -16.59562 -16.32205 -15.77803 -15.29399 -15.20607 -15.17880 -14.65629 -14.46849 -14.28019 -13.99551 -13.88971 -13.59123 -13.37559 -13.20057 -13.03154 -12.98692 -12.81718 -12.57561 -12.32481 -12.16183 -11.95704 -11.87947 -11.79161 -11.57914 -11.13733 -10.56279 -10.39893 -10.28038 -9.80916 -9.28726 -8.35390 -6.58697 0.72002 0.84496 1.00050 1.52152 1.65126 1.92393 2.23321 2.39535 2.65129 2.87460 2.98439 3.61809 3.69870 3.92145 3.97560 4.11266 4.32201 4.37671 4.42248 4.42593 4.49730 4.50038 4.65557 4.69511 4.74010 4.75665 4.76942 4.88063 4.98250 4.98476 5.05600 5.24541 5.29077 5.35233 5.39468 5.42423 5.52526 5.65593 5.97826 6.05643 6.34540 6.47541 6.58274 6.68173 7.09496 7.74157 7.96327 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.016425 B = 0.004783 C = 0.003835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.306979 B = 5852.166898 C = 7299.019940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.343 6.343 3 C -0.086 4.086 4 C -0.093 4.093 5 C -0.315 4.315 6 C 0.395 3.605 7 N -0.741 5.741 8 C 0.079 3.921 9 C 0.360 3.640 10 O -0.485 6.485 11 C -0.104 4.104 12 C -0.135 4.135 13 C -0.140 4.140 14 C -0.140 4.140 15 N -0.622 5.622 16 C 0.261 3.739 17 C -0.500 4.500 18 H 0.066 0.934 19 C 0.025 3.975 20 N -0.828 5.828 21 Si 1.179 2.821 22 H -0.290 1.290 23 H -0.322 1.322 24 H -0.288 1.288 25 H 0.056 0.944 26 H 0.106 0.894 27 H 0.055 0.945 28 H 0.150 0.850 29 H 0.150 0.850 30 H 0.393 0.607 31 H 0.116 0.884 32 H 0.117 0.883 33 H 0.046 0.954 34 H 0.088 0.912 35 H 0.045 0.955 36 H 0.079 0.921 37 H 0.091 0.909 38 H 0.050 0.950 39 H 0.050 0.950 40 H 0.091 0.909 41 H 0.079 0.921 42 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.852 20.482 -0.611 24.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.257 6.257 3 C -0.134 4.134 4 C -0.117 4.117 5 C -0.341 4.341 6 C 0.159 3.841 7 N -0.378 5.378 8 C -0.045 4.045 9 C 0.237 3.763 10 O -0.360 6.360 11 C -0.105 4.105 12 C -0.192 4.192 13 C -0.197 4.197 14 C -0.197 4.197 15 N -0.351 5.351 16 C 0.135 3.865 17 C -0.533 4.533 18 H 0.084 0.916 19 C -0.192 4.192 20 N -0.452 5.452 21 Si 1.010 2.990 22 H -0.218 1.218 23 H -0.255 1.255 24 H -0.216 1.216 25 H 0.074 0.926 26 H 0.124 0.876 27 H 0.073 0.927 28 H 0.167 0.833 29 H 0.168 0.832 30 H 0.228 0.772 31 H 0.134 0.866 32 H 0.134 0.866 33 H 0.065 0.935 34 H 0.107 0.893 35 H 0.064 0.936 36 H 0.098 0.902 37 H 0.109 0.891 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.109 0.891 41 H 0.098 0.902 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -10.044 20.900 -0.984 23.209 hybrid contribution -1.765 -1.520 0.680 2.426 sum -11.808 19.380 -0.304 22.696 Atomic orbital electron populations 1.23095 0.78374 1.04173 1.01226 1.85895 1.21688 1.27287 1.90854 1.19795 0.92420 0.85216 1.15970 1.21242 0.99769 0.90906 0.99778 1.20785 0.91074 0.98664 1.23546 1.18450 0.89520 0.84970 0.91140 1.44202 1.08616 1.01741 1.83274 1.21931 0.95278 0.81673 1.05659 1.25366 0.88999 0.93425 0.68549 1.90401 1.20296 1.88267 1.37025 1.21171 0.98382 0.90666 1.00311 1.21747 0.96605 0.99196 1.01660 1.21913 0.99106 1.04692 0.93996 1.21913 0.99198 1.04662 0.93916 1.66254 1.38507 0.97691 1.32616 1.17809 0.88373 0.89977 0.90381 1.20466 0.94814 0.93665 1.44369 0.91594 1.28282 0.94535 1.05251 0.91160 1.70644 1.39671 1.04720 1.30128 0.81619 0.71470 0.69785 0.76083 1.21802 1.25493 1.21589 0.92560 0.87566 0.92653 0.83284 0.83242 0.77152 0.86624 0.86596 0.93500 0.89337 0.93553 0.90205 0.89060 0.93066 0.93116 0.89064 0.90196 0.90803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.80 9.83 113.37 1.11 1.91 16 2 O -0.34 -15.67 9.64 -89.33 -0.86 -16.53 16 3 C -0.09 -4.18 6.74 23.23 0.16 -4.03 16 4 C -0.09 -3.59 9.12 22.51 0.21 -3.39 16 5 C -0.32 -11.66 9.33 22.70 0.21 -11.45 16 6 C 0.39 17.31 7.65 133.46 1.02 18.33 16 7 N -0.74 -27.53 5.70 -348.56 -1.99 -29.52 16 8 C 0.08 1.89 4.63 85.63 0.40 2.28 16 9 C 0.36 8.50 6.04 29.10 0.18 8.67 16 10 O -0.49 -15.83 15.29 -1.45 -0.02 -15.85 16 11 C -0.10 -1.55 0.87 -52.93 -0.05 -1.59 16 12 C -0.13 -2.17 7.76 71.98 0.56 -1.61 16 13 C -0.14 -1.47 8.25 71.98 0.59 -0.87 16 14 C -0.14 -1.47 8.26 71.98 0.59 -0.87 16 15 N -0.62 -32.90 5.13 -186.18 -0.95 -33.85 16 16 C 0.26 14.57 6.26 40.23 0.25 14.82 16 17 C -0.50 -30.08 9.28 23.36 0.22 -29.86 16 18 H 0.07 4.14 7.57 -2.91 -0.02 4.12 16 19 C 0.03 1.48 5.51 85.28 0.47 1.95 16 20 N -0.83 -48.98 13.65 21.84 0.30 -48.69 16 21 Si 1.18 62.16 25.92 68.60 1.78 63.94 16 22 H -0.29 -15.29 7.11 99.48 0.71 -14.58 16 23 H -0.32 -16.38 7.11 99.48 0.71 -15.67 16 24 H -0.29 -15.30 6.58 99.48 0.65 -14.64 16 25 H 0.06 1.50 7.70 -2.39 -0.02 1.48 16 26 H 0.11 2.65 8.14 -2.39 -0.02 2.63 16 27 H 0.05 1.48 7.68 -2.39 -0.02 1.46 16 28 H 0.15 4.47 6.43 -2.91 -0.02 4.46 16 29 H 0.15 4.06 6.67 -2.91 -0.02 4.04 16 30 H 0.39 16.29 7.56 -92.71 -0.70 15.59 16 31 H 0.12 2.24 7.15 -2.39 -0.02 2.22 16 32 H 0.12 2.23 7.15 -2.39 -0.02 2.22 16 33 H 0.05 0.88 8.10 -2.39 -0.02 0.86 16 34 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.05 0.88 8.10 -2.39 -0.02 0.86 16 36 H 0.08 0.65 7.28 -2.39 -0.02 0.63 16 37 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 38 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 40 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 41 H 0.08 0.65 7.28 -2.39 -0.02 0.63 16 42 H 0.28 16.16 8.72 -92.71 -0.81 15.35 16 Total: -1.00 -75.62 341.91 4.41 -71.21 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: 0.24 Total: 14.99 kcal Atomic # 6 Polarization: -11.62 SS G_CDS: 5.92 Total: -5.70 kcal Atomic # 7 Polarization: -109.41 SS G_CDS: -2.64 Total: -112.05 kcal Atomic # 8 Polarization: -31.50 SS G_CDS: -0.88 Total: -32.39 kcal Atomic # 14 Polarization: 62.16 SS G_CDS: 1.78 Total: 63.94 kcal Total: -75.62 4.41 -71.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164002674.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.649 kcal (2) G-P(sol) polarization free energy of solvation -75.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds