Wall clock time and date at job start Tue Mar 31 2020 07:27:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46772 * 2 1 4 4 C 1.52998 * 109.47045 * 180.02562 * 3 2 1 5 5 N 1.46494 * 109.47228 * 180.02562 * 4 3 2 6 6 C 1.36837 * 119.99942 * 264.50652 * 5 4 3 7 7 H 1.07993 * 120.00332 * 144.86714 * 6 5 4 8 8 C 1.38906 * 119.99659 * 324.86641 * 6 5 4 9 9 N 1.31498 * 120.00067 * 338.64576 * 8 6 5 10 10 Si 1.86796 * 119.99824 * 158.65044 * 8 6 5 11 11 H 1.48504 * 109.47292 * 89.99902 * 10 8 6 12 12 H 1.48500 * 109.47206 * 209.99642 * 10 8 6 13 13 H 1.48498 * 109.47385 * 329.99534 * 10 8 6 14 14 C 1.38343 * 120.00464 * 84.50476 * 5 4 3 15 15 C 1.39477 * 119.53883 * 184.99857 * 14 5 4 16 16 C 1.36855 * 119.37654 * 179.97438 * 15 14 5 17 17 C 1.40416 * 118.48846 * 0.02562 * 16 15 14 18 18 C 1.47395 * 120.47693 * 179.97438 * 17 16 15 19 19 O 1.21517 * 120.00066 * 0.02562 * 18 17 16 20 20 O 1.34764 * 120.00127 * 180.02562 * 18 17 16 21 21 C 1.45202 * 117.00265 * 180.02562 * 20 18 17 22 22 C 1.52998 * 109.47130 * 180.02562 * 21 20 18 23 23 C 1.39708 * 119.04519 * 359.97438 * 17 16 15 24 24 N 1.31595 * 120.51953 * 0.02562 * 23 17 16 25 25 H 1.09006 * 109.47337 * 300.00092 * 1 2 3 26 26 H 1.08997 * 109.47657 * 60.00412 * 1 2 3 27 27 H 1.09001 * 109.47032 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47061 * 239.99976 * 2 1 3 29 29 H 1.08997 * 109.47237 * 119.99255 * 2 1 3 30 30 H 1.08997 * 109.47347 * 60.00151 * 3 2 1 31 31 H 1.09006 * 109.46901 * 300.00118 * 3 2 1 32 32 H 1.08995 * 109.47201 * 59.99214 * 4 3 2 33 33 H 1.09006 * 109.47146 * 299.99697 * 4 3 2 34 34 H 0.97004 * 119.99697 * 179.97438 * 9 8 6 35 35 H 1.08001 * 120.31238 * 0.25856 * 15 14 5 36 36 H 1.08005 * 120.75323 * 180.02562 * 16 15 14 37 37 H 1.08997 * 109.46986 * 299.99984 * 21 20 18 38 38 H 1.08996 * 109.46948 * 59.99741 * 21 20 18 39 39 H 1.08996 * 109.47562 * 59.99390 * 22 21 20 40 40 H 1.08997 * 109.47221 * 180.02562 * 22 21 20 41 41 H 1.09011 * 109.46958 * 299.99606 * 22 21 20 42 42 H 1.07994 * 119.73964 * 179.97438 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 -0.0006 5 7 4.0582 2.8238 0.0000 6 6 4.3927 3.4318 -1.1794 7 1 4.2060 4.4867 -1.3151 8 6 4.9724 2.6919 -2.2021 9 7 5.5794 1.5575 -1.9304 10 14 4.8898 3.3084 -3.9635 11 1 6.0728 4.1607 -4.2456 12 1 4.8808 2.1506 -4.8933 13 1 3.6502 4.1041 -4.1518 14 6 4.1811 3.5136 1.1929 15 6 4.5462 4.8596 1.1744 16 6 4.6663 5.5389 2.3564 17 6 4.4159 4.8493 3.5536 18 6 4.5329 5.5380 4.8515 19 8 4.8476 6.7110 4.8907 20 8 4.2908 4.8667 5.9947 21 6 4.4246 5.6086 7.2358 22 6 4.1137 4.6870 8.4169 23 6 4.0542 3.5011 3.4969 24 7 3.9499 2.8853 2.3386 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5137 0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6765 1.9564 -0.8900 32 1 3.9329 0.9289 -0.8907 33 1 3.9337 0.9287 0.8892 34 1 5.9839 1.0406 -2.6447 35 1 4.7279 5.3623 0.2359 36 1 4.9474 6.5817 2.3680 37 1 5.4439 5.9838 7.3267 38 1 3.7277 6.4466 7.2350 39 1 4.8109 3.8492 8.4174 40 1 4.2137 5.2440 9.3484 41 1 3.0944 4.3115 8.3261 42 1 3.8594 2.9597 4.4108 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167128450.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:54 Heat of formation + Delta-G solvation = -60.949946 kcal Electronic energy + Delta-G solvation = -23126.938821 eV Core-core repulsion = 19685.713961 eV Total energy + Delta-G solvation = -3441.224860 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.97084 -39.01527 -36.67693 -35.94489 -34.25920 -32.42465 -31.60227 -31.48005 -29.70446 -28.14268 -25.49044 -24.01790 -22.91256 -22.54071 -21.40939 -20.54803 -20.10083 -17.90743 -17.41237 -16.48270 -16.14249 -15.98753 -15.19951 -14.94634 -14.79568 -14.01065 -13.78942 -13.75870 -13.59641 -13.10301 -12.95434 -12.80310 -12.45908 -12.30174 -12.04840 -11.84296 -11.71158 -11.63692 -11.48629 -11.37340 -11.26225 -10.76649 -10.58046 -10.54408 -10.43180 -10.26686 -9.98054 -9.94301 -9.53638 -9.06881 -8.68582 -8.42717 -7.07585 -6.61952 -4.22815 1.63366 2.38704 2.95753 3.04107 3.08099 3.16855 3.35919 3.79285 4.46308 4.53835 4.92988 5.00201 5.04695 5.27967 5.33259 5.38845 5.40703 5.50424 5.55857 5.75634 5.80462 5.83196 5.94596 5.98325 6.12372 6.15612 6.19177 6.26242 6.29214 6.43489 6.55726 6.67695 6.69810 6.79875 6.87942 6.90166 7.06808 7.19345 7.25837 7.46086 7.82020 8.21873 8.41277 8.77722 8.91439 9.45961 10.25076 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.015670 B = 0.004129 C = 0.003442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.472914 B = 6779.028114 C = 8133.865679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.118 4.118 3 C -0.127 4.127 4 C 0.112 3.888 5 N -0.381 5.381 6 C -0.324 4.324 7 H 0.100 0.900 8 C 0.044 3.956 9 N -0.841 5.841 10 Si 0.925 3.075 11 H -0.272 1.272 12 H -0.278 1.278 13 H -0.264 1.264 14 C 0.379 3.621 15 C -0.249 4.249 16 C 0.020 3.980 17 C -0.323 4.323 18 C 0.525 3.475 19 O -0.545 6.545 20 O -0.362 6.362 21 C 0.064 3.936 22 C -0.151 4.151 23 C 0.222 3.778 24 N -0.570 5.570 25 H 0.051 0.949 26 H 0.050 0.950 27 H 0.048 0.952 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.107 0.893 33 H 0.066 0.934 34 H 0.277 0.723 35 H 0.131 0.869 36 H 0.123 0.877 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.074 0.926 41 H 0.065 0.935 42 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.834 -0.235 7.553 8.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.156 4.156 3 C -0.166 4.166 4 C -0.012 4.012 5 N -0.063 5.063 6 C -0.452 4.452 7 H 0.118 0.882 8 C -0.165 4.165 9 N -0.473 5.473 10 Si 0.750 3.250 11 H -0.197 1.197 12 H -0.203 1.203 13 H -0.189 1.189 14 C 0.136 3.864 15 C -0.275 4.275 16 C -0.005 4.005 17 C -0.333 4.333 18 C 0.374 3.626 19 O -0.437 6.437 20 O -0.280 6.280 21 C -0.010 4.010 22 C -0.208 4.208 23 C 0.053 3.947 24 N -0.290 5.290 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.067 0.933 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.124 0.876 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.149 0.851 36 H 0.141 0.859 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.093 0.907 41 H 0.084 0.916 42 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -4.876 -1.136 7.011 8.615 hybrid contribution 0.364 1.301 -0.657 1.502 sum -4.512 0.165 6.354 7.795 Atomic orbital electron populations 1.21754 0.96501 1.00793 1.01531 1.21407 0.95089 0.97381 1.01727 1.21912 0.97205 0.95893 1.01563 1.21674 0.91551 0.83602 1.04361 1.42678 1.50325 1.11480 1.01854 1.19607 1.39904 0.96576 0.89151 0.88216 1.25512 0.93630 0.96201 1.01150 1.69973 1.28698 1.14503 1.34176 0.85951 0.79470 0.78830 0.80761 1.19729 1.20280 1.18865 1.18920 0.91463 0.89757 0.86249 1.20873 1.13331 0.94736 0.98519 1.20747 0.90760 0.98566 0.90414 1.19117 1.27317 0.97164 0.89662 1.21079 0.72755 0.84766 0.83979 1.90734 1.47467 1.17574 1.87933 1.86556 1.82090 1.44385 1.14940 1.22849 1.01739 0.94740 0.81720 1.21788 1.03067 1.00235 0.95742 1.22468 0.87616 0.89798 0.94862 1.67292 1.26219 1.38273 0.97180 0.93000 0.93070 0.93316 0.92290 0.92147 0.92528 0.92427 0.87570 0.91591 0.91267 0.85132 0.85918 0.91759 0.91774 0.91547 0.90739 0.91585 0.83437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 9.91 37.16 0.37 -1.57 16 2 C -0.12 -1.81 5.93 -26.73 -0.16 -1.97 16 3 C -0.13 -2.37 5.51 -26.73 -0.15 -2.51 16 4 C 0.11 2.42 4.93 -4.05 -0.02 2.40 16 5 N -0.38 -8.98 2.63 -115.06 -0.30 -9.28 16 6 C -0.32 -7.75 8.64 -15.07 -0.13 -7.88 16 7 H 0.10 2.31 6.51 -52.49 -0.34 1.97 16 8 C 0.04 1.03 4.93 -17.45 -0.09 0.95 16 9 N -0.84 -20.61 11.37 55.50 0.63 -19.98 16 10 Si 0.93 18.12 29.60 -169.99 -5.03 13.09 16 11 H -0.27 -5.35 7.11 56.52 0.40 -4.94 16 12 H -0.28 -5.40 7.11 56.52 0.40 -5.00 16 13 H -0.26 -5.12 7.11 56.52 0.40 -4.71 16 14 C 0.38 8.72 7.31 -155.28 -1.13 7.58 16 15 C -0.25 -5.38 9.23 -39.62 -0.37 -5.75 16 16 C 0.02 0.40 9.65 -39.26 -0.38 0.02 16 17 C -0.32 -6.40 5.89 -104.80 -0.62 -7.02 16 18 C 0.52 9.96 7.89 34.46 0.27 10.24 16 19 O -0.55 -11.33 16.20 -19.28 -0.31 -11.64 16 20 O -0.36 -5.88 9.49 -40.67 -0.39 -6.26 16 21 C 0.06 0.81 6.20 37.16 0.23 1.04 16 22 C -0.15 -1.39 10.29 37.16 0.38 -1.01 16 23 C 0.22 4.33 10.79 -17.10 -0.18 4.14 16 24 N -0.57 -12.42 9.13 -12.11 -0.11 -12.53 16 25 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 29 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 31 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 32 H 0.11 2.46 5.40 -51.93 -0.28 2.18 16 33 H 0.07 1.47 7.46 -51.93 -0.39 1.08 16 34 H 0.28 6.35 8.31 -40.82 -0.34 6.01 16 35 H 0.13 2.75 6.26 -52.49 -0.33 2.42 16 36 H 0.12 2.31 7.73 -52.48 -0.41 1.91 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.07 0.59 8.14 -51.92 -0.42 0.17 16 42 H 0.15 2.47 7.61 -52.49 -0.40 2.07 16 LS Contribution 353.82 15.07 5.33 5.33 Total: -1.00 -27.01 353.82 -8.50 -35.52 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -6.35 Total: 7.10 kcal Atomic # 6 Polarization: 0.63 SS G_CDS: -1.97 Total: -1.34 kcal Atomic # 7 Polarization: -42.01 SS G_CDS: 0.22 Total: -41.79 kcal Atomic # 8 Polarization: -17.20 SS G_CDS: -0.70 Total: -17.90 kcal Atomic # 14 Polarization: 18.12 SS G_CDS: -5.03 Total: 13.09 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -27.01 -8.50 -35.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167128450.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.433 kcal (2) G-P(sol) polarization free energy of solvation -27.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds