Wall clock time and date at job start Tue Mar 31 2020 07:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46772 * 2 1 4 4 C 1.52998 * 109.47045 * 180.02562 * 3 2 1 5 5 N 1.46494 * 109.47228 * 180.02562 * 4 3 2 6 6 C 1.36837 * 119.99942 * 264.50652 * 5 4 3 7 7 H 1.07993 * 120.00332 * 144.86714 * 6 5 4 8 8 C 1.38906 * 119.99659 * 324.86641 * 6 5 4 9 9 N 1.31498 * 120.00067 * 338.64576 * 8 6 5 10 10 Si 1.86796 * 119.99824 * 158.65044 * 8 6 5 11 11 H 1.48504 * 109.47292 * 89.99902 * 10 8 6 12 12 H 1.48500 * 109.47206 * 209.99642 * 10 8 6 13 13 H 1.48498 * 109.47385 * 329.99534 * 10 8 6 14 14 C 1.38343 * 120.00464 * 84.50476 * 5 4 3 15 15 C 1.39477 * 119.53883 * 184.99857 * 14 5 4 16 16 C 1.36855 * 119.37654 * 179.97438 * 15 14 5 17 17 C 1.40416 * 118.48846 * 0.02562 * 16 15 14 18 18 C 1.47395 * 120.47693 * 179.97438 * 17 16 15 19 19 O 1.21517 * 120.00066 * 0.02562 * 18 17 16 20 20 O 1.34764 * 120.00127 * 180.02562 * 18 17 16 21 21 C 1.45202 * 117.00265 * 180.02562 * 20 18 17 22 22 C 1.52998 * 109.47130 * 180.02562 * 21 20 18 23 23 C 1.39708 * 119.04519 * 359.97438 * 17 16 15 24 24 N 1.31595 * 120.51953 * 0.02562 * 23 17 16 25 25 H 1.09006 * 109.47337 * 300.00092 * 1 2 3 26 26 H 1.08997 * 109.47657 * 60.00412 * 1 2 3 27 27 H 1.09001 * 109.47032 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47061 * 239.99976 * 2 1 3 29 29 H 1.08997 * 109.47237 * 119.99255 * 2 1 3 30 30 H 1.08997 * 109.47347 * 60.00151 * 3 2 1 31 31 H 1.09006 * 109.46901 * 300.00118 * 3 2 1 32 32 H 1.08995 * 109.47201 * 59.99214 * 4 3 2 33 33 H 1.09006 * 109.47146 * 299.99697 * 4 3 2 34 34 H 0.97004 * 119.99697 * 179.97438 * 9 8 6 35 35 H 1.08001 * 120.31238 * 0.25856 * 15 14 5 36 36 H 1.08005 * 120.75323 * 180.02562 * 16 15 14 37 37 H 1.08997 * 109.46986 * 299.99984 * 21 20 18 38 38 H 1.08996 * 109.46948 * 59.99741 * 21 20 18 39 39 H 1.08996 * 109.47562 * 59.99390 * 22 21 20 40 40 H 1.08997 * 109.47221 * 180.02562 * 22 21 20 41 41 H 1.09011 * 109.46958 * 299.99606 * 22 21 20 42 42 H 1.07994 * 119.73964 * 179.97438 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 -0.0006 5 7 4.0582 2.8238 0.0000 6 6 4.3927 3.4318 -1.1794 7 1 4.2060 4.4867 -1.3151 8 6 4.9724 2.6919 -2.2021 9 7 5.5794 1.5575 -1.9304 10 14 4.8898 3.3084 -3.9635 11 1 6.0728 4.1607 -4.2456 12 1 4.8808 2.1506 -4.8933 13 1 3.6502 4.1041 -4.1518 14 6 4.1811 3.5136 1.1929 15 6 4.5462 4.8596 1.1744 16 6 4.6663 5.5389 2.3564 17 6 4.4159 4.8493 3.5536 18 6 4.5329 5.5380 4.8515 19 8 4.8476 6.7110 4.8907 20 8 4.2908 4.8667 5.9947 21 6 4.4246 5.6086 7.2358 22 6 4.1137 4.6870 8.4169 23 6 4.0542 3.5011 3.4969 24 7 3.9499 2.8853 2.3386 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5137 0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6765 1.9564 -0.8900 32 1 3.9329 0.9289 -0.8907 33 1 3.9337 0.9287 0.8892 34 1 5.9839 1.0406 -2.6447 35 1 4.7279 5.3623 0.2359 36 1 4.9474 6.5817 2.3680 37 1 5.4439 5.9838 7.3267 38 1 3.7277 6.4466 7.2350 39 1 4.8109 3.8492 8.4174 40 1 4.2137 5.2440 9.3484 41 1 3.0944 4.3115 8.3261 42 1 3.8594 2.9597 4.4108 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167128450.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:53 Heat of formation + Delta-G solvation = -72.129662 kcal Electronic energy + Delta-G solvation = -23127.423610 eV Core-core repulsion = 19685.713961 eV Total energy + Delta-G solvation = -3441.709648 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.50554 -40.60309 -38.28805 -37.39175 -35.66603 -34.13089 -33.16013 -32.63778 -31.19529 -29.66425 -27.16844 -25.41824 -24.37135 -23.88667 -22.81016 -21.95858 -21.69527 -19.59132 -18.95240 -18.07091 -17.57625 -17.40648 -16.87181 -16.53974 -16.17729 -15.51089 -15.34520 -15.18612 -14.97861 -14.52297 -14.32777 -13.95406 -13.86746 -13.57664 -13.54233 -13.33215 -13.15877 -12.98417 -12.88704 -12.78688 -12.43075 -12.22761 -12.06070 -11.95386 -11.83564 -11.49578 -11.48390 -11.42696 -11.20217 -10.74621 -10.40679 -10.10307 -8.81823 -8.34997 -6.04940 0.01475 0.72533 1.40025 1.43942 1.55467 1.78179 1.86081 2.17356 2.77235 2.83029 3.26398 3.79317 4.02155 4.08609 4.09728 4.16195 4.19160 4.19485 4.31440 4.42048 4.45778 4.51184 4.59948 4.86523 4.87261 4.90280 4.99619 5.01401 5.02618 5.07822 5.17706 5.18758 5.22509 5.28919 5.38866 5.41685 5.46177 5.56244 5.61612 5.79702 6.07970 6.48964 6.91901 7.06883 7.17464 7.73451 8.51580 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.015670 B = 0.004129 C = 0.003442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.472914 B = 6779.028114 C = 8133.865679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.114 4.114 3 C -0.114 4.114 4 C 0.118 3.882 5 N -0.401 5.401 6 C -0.345 4.345 7 H 0.099 0.901 8 C 0.008 3.992 9 N -0.875 5.875 10 Si 0.989 3.011 11 H -0.271 1.271 12 H -0.274 1.274 13 H -0.260 1.260 14 C 0.365 3.635 15 C -0.264 4.264 16 C 0.024 3.976 17 C -0.323 4.323 18 C 0.532 3.468 19 O -0.564 6.564 20 O -0.360 6.360 21 C 0.053 3.947 22 C -0.144 4.144 23 C 0.224 3.776 24 N -0.583 5.583 25 H 0.052 0.948 26 H 0.051 0.949 27 H 0.070 0.930 28 H 0.059 0.941 29 H 0.063 0.937 30 H 0.046 0.954 31 H 0.047 0.953 32 H 0.089 0.911 33 H 0.052 0.948 34 H 0.279 0.721 35 H 0.130 0.870 36 H 0.136 0.864 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.101 0.899 41 H 0.069 0.931 42 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.667 -0.127 8.829 10.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.152 4.152 3 C -0.152 4.152 4 C -0.005 4.005 5 N -0.085 5.085 6 C -0.473 4.473 7 H 0.116 0.884 8 C -0.198 4.198 9 N -0.509 5.509 10 Si 0.811 3.189 11 H -0.196 1.196 12 H -0.199 1.199 13 H -0.184 1.184 14 C 0.123 3.877 15 C -0.290 4.290 16 C -0.001 4.001 17 C -0.333 4.333 18 C 0.381 3.619 19 O -0.457 6.457 20 O -0.277 6.277 21 C -0.020 4.020 22 C -0.201 4.201 23 C 0.056 3.944 24 N -0.303 5.303 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.089 0.911 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.107 0.893 33 H 0.071 0.929 34 H 0.089 0.911 35 H 0.148 0.852 36 H 0.154 0.846 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.120 0.880 41 H 0.088 0.912 42 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -5.720 -1.028 8.336 10.162 hybrid contribution 0.658 1.353 -0.768 1.689 sum -5.062 0.325 7.568 9.110 Atomic orbital electron populations 1.21712 0.94363 1.02300 1.01689 1.21385 0.96901 0.94962 1.01921 1.21781 0.95032 0.97952 1.00458 1.21588 0.93331 0.82900 1.02684 1.42831 1.51725 1.12019 1.01964 1.19820 1.40705 0.96905 0.89898 0.88358 1.26281 0.92893 0.96248 1.04331 1.70055 1.29867 1.15735 1.35223 0.85001 0.79361 0.78271 0.76265 1.19638 1.19892 1.18409 1.19249 0.91420 0.90303 0.86690 1.20931 1.14360 0.94578 0.99130 1.20930 0.89783 0.99160 0.90203 1.19349 1.26196 0.97419 0.90322 1.20846 0.72229 0.84300 0.84506 1.90728 1.48256 1.18365 1.88386 1.86540 1.81308 1.44526 1.15314 1.23264 1.02045 0.95690 0.81008 1.21815 1.03258 0.99941 0.95060 1.22932 0.86404 0.89908 0.95128 1.67348 1.26766 1.38698 0.97484 0.92843 0.92937 0.91131 0.92264 0.91802 0.93499 0.93412 0.89265 0.92931 0.91098 0.85238 0.84597 0.91682 0.91532 0.91336 0.88005 0.91227 0.80469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.51 9.91 71.98 0.71 -2.79 16 2 C -0.11 -3.42 5.93 30.60 0.18 -3.24 16 3 C -0.11 -4.29 5.51 30.60 0.17 -4.12 16 4 C 0.12 5.31 4.93 86.38 0.43 5.73 16 5 N -0.40 -19.47 2.63 -517.95 -1.36 -20.83 16 6 C -0.35 -16.97 8.64 84.07 0.73 -16.25 16 7 H 0.10 4.69 6.51 -2.91 -0.02 4.68 16 8 C 0.01 0.39 4.93 84.90 0.42 0.81 16 9 N -0.88 -44.01 11.37 21.66 0.25 -43.77 16 10 Si 0.99 37.53 29.60 68.60 2.03 39.56 16 11 H -0.27 -10.17 7.11 99.48 0.71 -9.47 16 12 H -0.27 -10.13 7.11 99.48 0.71 -9.43 16 13 H -0.26 -9.58 7.11 99.48 0.71 -8.87 16 14 C 0.37 17.11 7.31 133.28 0.97 18.09 16 15 C -0.26 -11.58 9.23 22.24 0.21 -11.37 16 16 C 0.02 0.96 9.65 22.48 0.22 1.17 16 17 C -0.32 -12.47 5.89 -19.98 -0.12 -12.59 16 18 C 0.53 19.31 7.89 70.23 0.55 19.86 16 19 O -0.56 -22.59 16.20 19.78 0.32 -22.27 16 20 O -0.36 -10.88 9.49 -56.74 -0.54 -11.42 16 21 C 0.05 1.23 6.20 71.98 0.45 1.67 16 22 C -0.14 -2.20 10.29 71.98 0.74 -1.46 16 23 C 0.22 8.48 10.79 85.08 0.92 9.40 16 24 N -0.58 -25.43 9.13 -192.22 -1.76 -27.18 16 25 H 0.05 1.28 8.14 -2.38 -0.02 1.26 16 26 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 32 H 0.09 4.31 5.40 -2.39 -0.01 4.29 16 33 H 0.05 2.43 7.46 -2.38 -0.02 2.41 16 34 H 0.28 13.09 8.31 -92.71 -0.77 12.32 16 35 H 0.13 5.60 6.26 -2.91 -0.02 5.58 16 36 H 0.14 5.02 7.73 -2.91 -0.02 5.00 16 37 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 42 H 0.18 5.53 7.61 -2.91 -0.02 5.51 16 Total: -1.00 -58.29 353.82 6.52 -51.77 By element: Atomic # 1 Polarization: 28.22 SS G_CDS: 1.00 Total: 29.23 kcal Atomic # 6 Polarization: -1.65 SS G_CDS: 6.57 Total: 4.92 kcal Atomic # 7 Polarization: -88.91 SS G_CDS: -2.87 Total: -91.78 kcal Atomic # 8 Polarization: -33.48 SS G_CDS: -0.22 Total: -33.69 kcal Atomic # 14 Polarization: 37.53 SS G_CDS: 2.03 Total: 39.56 kcal Total: -58.29 6.52 -51.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167128450.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.360 kcal (2) G-P(sol) polarization free energy of solvation -58.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds