Wall clock time and date at job start Tue Mar 31 2020 07:27:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.46880 * 2 1 4 4 C 1.53003 * 109.47197 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.47053 * 180.02562 * 4 3 2 6 6 C 1.36836 * 120.00021 * 270.00119 * 5 4 3 7 7 H 1.08001 * 120.00125 * 140.03755 * 6 5 4 8 8 C 1.38899 * 120.00169 * 320.03456 * 6 5 4 9 9 N 1.31497 * 119.99780 * 341.10221 * 8 6 5 10 10 Si 1.86801 * 120.00059 * 161.09806 * 8 6 5 11 11 H 1.48499 * 109.47216 * 60.00605 * 10 8 6 12 12 H 1.48506 * 109.46799 * 180.02562 * 10 8 6 13 13 H 1.48499 * 109.47209 * 300.00239 * 10 8 6 14 14 C 1.38346 * 120.00171 * 90.00386 * 5 4 3 15 15 C 1.39481 * 119.53866 * 170.71095 * 14 5 4 16 16 C 1.36851 * 119.37504 * 180.25922 * 15 14 5 17 17 C 1.40411 * 118.49015 * 0.02562 * 16 15 14 18 18 C 1.47405 * 120.48054 * 179.97438 * 17 16 15 19 19 O 1.21515 * 120.00315 * 186.04803 * 18 17 16 20 20 O 1.34771 * 119.99769 * 6.04143 * 18 17 16 21 21 C 1.45201 * 116.99921 * 180.02562 * 20 18 17 22 22 C 1.39702 * 119.04663 * 0.02562 * 17 16 15 23 23 C 1.50697 * 119.74279 * 179.97438 * 22 17 16 24 24 N 1.31593 * 120.52125 * 359.97438 * 22 17 16 25 25 H 1.08993 * 109.47214 * 60.00282 * 1 2 3 26 26 H 1.09001 * 109.46560 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47064 * 299.99655 * 1 2 3 28 28 H 1.09000 * 109.47408 * 240.00162 * 2 1 3 29 29 H 1.08996 * 109.47620 * 120.00013 * 2 1 3 30 30 H 1.09000 * 109.46968 * 59.99892 * 3 2 1 31 31 H 1.08998 * 109.47521 * 300.00319 * 3 2 1 32 32 H 1.08994 * 109.46870 * 60.00269 * 4 3 2 33 33 H 1.08993 * 109.47091 * 299.99836 * 4 3 2 34 34 H 0.97003 * 120.00249 * 185.07601 * 9 8 6 35 35 H 1.07998 * 120.30936 * 0.29540 * 15 14 5 36 36 H 1.08005 * 120.75553 * 180.02562 * 16 15 14 37 37 H 1.08998 * 109.46632 * 299.99806 * 21 20 18 38 38 H 1.08994 * 109.47392 * 59.99570 * 21 20 18 39 39 H 1.08995 * 109.47086 * 180.02562 * 21 20 18 40 40 H 1.09002 * 109.47396 * 275.72910 * 23 22 17 41 41 H 1.09002 * 109.47056 * 35.73122 * 23 22 17 42 42 H 1.08999 * 109.47656 * 155.72743 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0582 2.8238 0.0013 6 6 4.2867 3.4693 -1.1835 7 1 4.0172 4.5094 -1.2925 8 6 4.8652 2.7867 -2.2459 9 7 5.5253 1.6703 -2.0288 10 14 4.7055 3.4547 -3.9831 11 1 5.3148 4.8072 -4.0514 12 1 5.4052 2.5478 -4.9283 13 1 3.2692 3.5396 -4.3507 14 6 4.2883 3.4757 1.1996 15 6 4.9332 4.7124 1.1970 16 6 5.1639 5.3518 2.3847 17 6 4.7396 4.7333 3.5717 18 6 4.9662 5.3827 4.8755 19 8 4.6960 4.7930 5.9031 20 8 5.4731 6.6303 4.9278 21 6 5.6702 7.2070 6.2458 22 6 4.1006 3.4931 3.4995 23 6 3.6392 2.8150 4.7637 24 7 3.8983 2.9123 2.3361 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.6765 1.9563 0.8900 31 1 1.6766 1.9564 -0.8899 32 1 3.9336 0.9287 -0.8891 33 1 3.9329 0.9290 0.8908 34 1 5.9914 1.2327 -2.7583 35 1 5.2470 5.1614 0.2662 36 1 5.6610 6.3103 2.4086 37 1 4.7143 7.2571 6.7670 38 1 6.3620 6.5857 6.8145 39 1 6.0818 8.2112 6.1451 40 1 4.4686 2.2594 5.2015 41 1 3.2907 3.5662 5.4725 42 1 2.8247 2.1289 4.5317 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167129044.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:48 Heat of formation + Delta-G solvation = -55.661694 kcal Electronic energy + Delta-G solvation = -23598.725249 eV Core-core repulsion = 20157.729705 eV Total energy + Delta-G solvation = -3440.995544 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.08052 -38.98340 -36.76745 -35.81271 -34.24183 -32.46201 -32.07791 -30.40641 -28.59024 -27.82227 -26.29074 -25.25294 -23.53822 -21.67100 -21.13502 -20.46233 -20.33303 -17.52863 -17.13708 -16.56319 -16.05898 -15.89627 -15.30064 -14.86351 -14.67531 -13.99763 -13.72893 -13.68555 -13.44658 -12.96813 -12.76541 -12.43534 -12.41643 -12.18298 -12.10752 -11.86981 -11.76896 -11.61972 -11.33738 -11.25197 -11.11045 -10.72345 -10.56210 -10.51695 -10.41534 -10.40529 -9.89724 -9.55715 -9.43746 -9.02565 -8.54541 -8.45958 -6.97594 -6.60624 -4.24705 1.65415 2.38085 2.98068 3.04739 3.05992 3.27379 3.35766 3.80352 4.49054 4.53830 4.91141 5.26073 5.28850 5.35514 5.42800 5.43863 5.51184 5.59568 5.60969 5.77609 5.98553 6.08989 6.16273 6.18971 6.27367 6.30482 6.31484 6.38357 6.46418 6.49744 6.60302 6.73035 6.74019 6.89151 6.95116 7.03988 7.09405 7.14570 7.26889 7.50915 7.89546 8.27082 8.42098 8.82615 8.93235 9.50692 10.29747 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.014765 B = 0.004839 C = 0.003832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.976418 B = 5784.787690 C = 7306.064264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.118 4.118 3 C -0.126 4.126 4 C 0.115 3.885 5 N -0.384 5.384 6 C -0.324 4.324 7 H 0.096 0.904 8 C 0.047 3.953 9 N -0.846 5.846 10 Si 0.927 3.073 11 H -0.268 1.268 12 H -0.280 1.280 13 H -0.268 1.268 14 C 0.387 3.613 15 C -0.248 4.248 16 C 0.008 3.992 17 C -0.320 4.320 18 C 0.521 3.479 19 O -0.537 6.537 20 O -0.365 6.365 21 C 0.040 3.960 22 C 0.256 3.744 23 C -0.105 4.105 24 N -0.570 5.570 25 H 0.050 0.950 26 H 0.047 0.953 27 H 0.051 0.949 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.103 0.897 33 H 0.062 0.938 34 H 0.278 0.722 35 H 0.132 0.868 36 H 0.124 0.876 37 H 0.057 0.943 38 H 0.057 0.943 39 H 0.092 0.908 40 H 0.073 0.927 41 H 0.092 0.908 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.865 3.115 5.125 6.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.157 4.157 3 C -0.165 4.165 4 C -0.008 4.008 5 N -0.067 5.067 6 C -0.453 4.453 7 H 0.114 0.886 8 C -0.162 4.162 9 N -0.478 5.478 10 Si 0.752 3.248 11 H -0.193 1.193 12 H -0.205 1.205 13 H -0.193 1.193 14 C 0.144 3.856 15 C -0.273 4.273 16 C -0.017 4.017 17 C -0.330 4.330 18 C 0.371 3.629 19 O -0.429 6.429 20 O -0.282 6.282 21 C -0.055 4.055 22 C 0.107 3.893 23 C -0.162 4.162 24 N -0.291 5.291 25 H 0.069 0.931 26 H 0.066 0.934 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.120 0.880 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.149 0.851 36 H 0.142 0.858 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.111 0.889 40 H 0.091 0.909 41 H 0.110 0.890 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.309 1.796 4.841 6.133 hybrid contribution 0.569 1.196 -0.690 1.493 sum -2.740 2.992 4.152 5.805 Atomic orbital electron populations 1.21748 0.96545 1.00732 1.01519 1.21416 0.95082 0.97551 1.01609 1.21891 0.97208 0.95716 1.01663 1.21615 0.91820 0.83694 1.03681 1.42586 1.51433 1.11449 1.01260 1.19505 1.41113 0.97916 0.86758 0.88617 1.25583 0.93803 0.95899 1.00937 1.69873 1.26467 1.17487 1.33972 0.85980 0.79132 0.79114 0.80565 1.19283 1.20506 1.19323 1.18959 0.89782 0.90747 0.86089 1.20950 1.09200 0.98397 0.98746 1.20939 0.92543 0.97144 0.91032 1.18941 1.22744 1.01000 0.90273 1.21105 0.73215 0.78618 0.89917 1.90691 1.50919 1.64527 1.36789 1.86580 1.76664 1.31716 1.33206 1.23083 1.01531 0.98020 0.82843 1.20807 0.87498 0.88063 0.92885 1.20953 1.01173 1.00745 0.93292 1.67182 1.28766 1.36344 0.96831 0.93094 0.93380 0.92992 0.92375 0.92243 0.92324 0.92426 0.87960 0.91968 0.91171 0.85053 0.85835 0.92469 0.92443 0.88906 0.90882 0.88958 0.92025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.91 37.16 0.37 -1.63 16 2 C -0.12 -1.87 5.93 -26.73 -0.16 -2.03 16 3 C -0.13 -2.41 5.54 -26.73 -0.15 -2.55 16 4 C 0.12 2.55 4.94 -4.04 -0.02 2.53 16 5 N -0.38 -9.12 2.59 -115.06 -0.30 -9.41 16 6 C -0.32 -7.76 8.15 -15.07 -0.12 -7.88 16 7 H 0.10 2.23 7.30 -52.49 -0.38 1.85 16 8 C 0.05 1.10 5.00 -17.45 -0.09 1.02 16 9 N -0.85 -20.82 11.48 55.49 0.64 -20.18 16 10 Si 0.93 18.16 29.60 -169.99 -5.03 13.13 16 11 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 12 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 13 H -0.27 -5.23 7.11 56.52 0.40 -4.82 16 14 C 0.39 9.03 7.30 -155.27 -1.13 7.89 16 15 C -0.25 -5.36 9.20 -39.62 -0.36 -5.72 16 16 C 0.01 0.16 9.67 -39.27 -0.38 -0.22 16 17 C -0.32 -6.44 5.89 -104.80 -0.62 -7.06 16 18 C 0.52 9.75 7.82 34.46 0.27 10.02 16 19 O -0.54 -10.39 13.13 -19.28 -0.25 -10.65 16 20 O -0.36 -5.94 9.90 -40.69 -0.40 -6.34 16 21 C 0.04 0.47 10.57 101.05 1.07 1.54 16 22 C 0.26 5.32 6.82 -82.15 -0.56 4.76 16 23 C -0.10 -1.86 8.91 36.00 0.32 -1.54 16 24 N -0.57 -12.79 9.10 -8.35 -0.08 -12.87 16 25 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 29 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 31 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 32 H 0.10 2.41 5.60 -51.93 -0.29 2.12 16 33 H 0.06 1.41 7.51 -51.93 -0.39 1.02 16 34 H 0.28 6.44 8.32 -40.82 -0.34 6.10 16 35 H 0.13 2.79 6.71 -52.49 -0.35 2.44 16 36 H 0.12 2.10 7.70 -52.48 -0.40 1.70 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 41 H 0.09 1.64 5.78 -51.93 -0.30 1.34 16 42 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 LS Contribution 349.37 15.07 5.26 5.26 Total: -1.00 -26.62 349.37 -8.05 -34.67 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: -6.33 Total: 7.28 kcal Atomic # 6 Polarization: 0.68 SS G_CDS: -1.57 Total: -0.89 kcal Atomic # 7 Polarization: -42.72 SS G_CDS: 0.26 Total: -42.46 kcal Atomic # 8 Polarization: -16.34 SS G_CDS: -0.66 Total: -16.99 kcal Atomic # 14 Polarization: 18.16 SS G_CDS: -5.03 Total: 13.13 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -26.62 -8.05 -34.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167129044.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.990 kcal (2) G-P(sol) polarization free energy of solvation -26.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds