Wall clock time and date at job start Tue Mar 31 2020 07:27:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.46880 * 2 1 4 4 C 1.53003 * 109.47197 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.47053 * 180.02562 * 4 3 2 6 6 C 1.36836 * 120.00021 * 270.00119 * 5 4 3 7 7 H 1.08001 * 120.00125 * 140.03755 * 6 5 4 8 8 C 1.38899 * 120.00169 * 320.03456 * 6 5 4 9 9 N 1.31497 * 119.99780 * 341.10221 * 8 6 5 10 10 Si 1.86801 * 120.00059 * 161.09806 * 8 6 5 11 11 H 1.48499 * 109.47216 * 60.00605 * 10 8 6 12 12 H 1.48506 * 109.46799 * 180.02562 * 10 8 6 13 13 H 1.48499 * 109.47209 * 300.00239 * 10 8 6 14 14 C 1.38346 * 120.00171 * 90.00386 * 5 4 3 15 15 C 1.39481 * 119.53866 * 170.71095 * 14 5 4 16 16 C 1.36851 * 119.37504 * 180.25922 * 15 14 5 17 17 C 1.40411 * 118.49015 * 0.02562 * 16 15 14 18 18 C 1.47405 * 120.48054 * 179.97438 * 17 16 15 19 19 O 1.21515 * 120.00315 * 186.04803 * 18 17 16 20 20 O 1.34771 * 119.99769 * 6.04143 * 18 17 16 21 21 C 1.45201 * 116.99921 * 180.02562 * 20 18 17 22 22 C 1.39702 * 119.04663 * 0.02562 * 17 16 15 23 23 C 1.50697 * 119.74279 * 179.97438 * 22 17 16 24 24 N 1.31593 * 120.52125 * 359.97438 * 22 17 16 25 25 H 1.08993 * 109.47214 * 60.00282 * 1 2 3 26 26 H 1.09001 * 109.46560 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47064 * 299.99655 * 1 2 3 28 28 H 1.09000 * 109.47408 * 240.00162 * 2 1 3 29 29 H 1.08996 * 109.47620 * 120.00013 * 2 1 3 30 30 H 1.09000 * 109.46968 * 59.99892 * 3 2 1 31 31 H 1.08998 * 109.47521 * 300.00319 * 3 2 1 32 32 H 1.08994 * 109.46870 * 60.00269 * 4 3 2 33 33 H 1.08993 * 109.47091 * 299.99836 * 4 3 2 34 34 H 0.97003 * 120.00249 * 185.07601 * 9 8 6 35 35 H 1.07998 * 120.30936 * 0.29540 * 15 14 5 36 36 H 1.08005 * 120.75553 * 180.02562 * 16 15 14 37 37 H 1.08998 * 109.46632 * 299.99806 * 21 20 18 38 38 H 1.08994 * 109.47392 * 59.99570 * 21 20 18 39 39 H 1.08995 * 109.47086 * 180.02562 * 21 20 18 40 40 H 1.09002 * 109.47396 * 275.72910 * 23 22 17 41 41 H 1.09002 * 109.47056 * 35.73122 * 23 22 17 42 42 H 1.08999 * 109.47656 * 155.72743 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0582 2.8238 0.0013 6 6 4.2867 3.4693 -1.1835 7 1 4.0172 4.5094 -1.2925 8 6 4.8652 2.7867 -2.2459 9 7 5.5253 1.6703 -2.0288 10 14 4.7055 3.4547 -3.9831 11 1 5.3148 4.8072 -4.0514 12 1 5.4052 2.5478 -4.9283 13 1 3.2692 3.5396 -4.3507 14 6 4.2883 3.4757 1.1996 15 6 4.9332 4.7124 1.1970 16 6 5.1639 5.3518 2.3847 17 6 4.7396 4.7333 3.5717 18 6 4.9662 5.3827 4.8755 19 8 4.6960 4.7930 5.9031 20 8 5.4731 6.6303 4.9278 21 6 5.6702 7.2070 6.2458 22 6 4.1006 3.4931 3.4995 23 6 3.6392 2.8150 4.7637 24 7 3.8983 2.9123 2.3361 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.6765 1.9563 0.8900 31 1 1.6766 1.9564 -0.8899 32 1 3.9336 0.9287 -0.8891 33 1 3.9329 0.9290 0.8908 34 1 5.9914 1.2327 -2.7583 35 1 5.2470 5.1614 0.2662 36 1 5.6610 6.3103 2.4086 37 1 4.7143 7.2571 6.7670 38 1 6.3620 6.5857 6.8145 39 1 6.0818 8.2112 6.1451 40 1 4.4686 2.2594 5.2015 41 1 3.2907 3.5662 5.4725 42 1 2.8247 2.1289 4.5317 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167129044.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:48 Heat of formation + Delta-G solvation = -66.934748 kcal Electronic energy + Delta-G solvation = -23599.214085 eV Core-core repulsion = 20157.729705 eV Total energy + Delta-G solvation = -3441.484380 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.60926 -40.54466 -38.38144 -37.23500 -35.67897 -34.18734 -33.69070 -32.01043 -30.09919 -29.07473 -27.68148 -26.93040 -25.03852 -23.21645 -22.66765 -21.97987 -21.86747 -19.23029 -18.62359 -18.14401 -17.64734 -17.23959 -16.92197 -16.44080 -16.11545 -15.57407 -15.28492 -15.09041 -14.81739 -14.49448 -14.09714 -13.92455 -13.89600 -13.61722 -13.59260 -13.35299 -13.16569 -12.93457 -12.86796 -12.81935 -12.61606 -12.20664 -12.05542 -11.97404 -11.82706 -11.63358 -11.44544 -11.13337 -11.05594 -10.69682 -10.24534 -10.13583 -8.72097 -8.34198 -6.07153 0.04542 0.72370 1.41751 1.45723 1.53578 1.80229 1.97947 2.18502 2.79272 2.83713 3.22504 3.68131 4.00661 4.09856 4.17567 4.19875 4.31569 4.40927 4.43195 4.46031 4.54209 4.60549 4.77362 4.85260 4.86567 4.87084 4.88092 4.94460 5.00197 5.03908 5.17255 5.24224 5.29795 5.34652 5.38162 5.42062 5.45910 5.56708 5.60118 5.85915 6.14502 6.53120 6.97460 7.10162 7.18654 7.77628 8.55812 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.014765 B = 0.004839 C = 0.003832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.976418 B = 5784.787690 C = 7306.064264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.114 4.114 3 C -0.112 4.112 4 C 0.123 3.877 5 N -0.406 5.406 6 C -0.341 4.341 7 H 0.094 0.906 8 C 0.011 3.989 9 N -0.881 5.881 10 Si 0.990 3.010 11 H -0.262 1.262 12 H -0.279 1.279 13 H -0.265 1.265 14 C 0.371 3.629 15 C -0.267 4.267 16 C 0.022 3.978 17 C -0.323 4.323 18 C 0.527 3.473 19 O -0.543 6.543 20 O -0.367 6.367 21 C 0.032 3.968 22 C 0.239 3.761 23 C -0.095 4.095 24 N -0.583 5.583 25 H 0.052 0.948 26 H 0.070 0.930 27 H 0.052 0.948 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.047 0.953 31 H 0.047 0.953 32 H 0.085 0.915 33 H 0.047 0.953 34 H 0.279 0.721 35 H 0.130 0.870 36 H 0.153 0.847 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.130 0.870 40 H 0.079 0.921 41 H 0.096 0.904 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.197 4.303 5.995 8.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.152 4.152 3 C -0.151 4.151 4 C 0.000 4.000 5 N -0.091 5.091 6 C -0.470 4.470 7 H 0.112 0.888 8 C -0.195 4.195 9 N -0.514 5.514 10 Si 0.813 3.187 11 H -0.187 1.187 12 H -0.204 1.204 13 H -0.190 1.190 14 C 0.129 3.871 15 C -0.292 4.292 16 C -0.003 4.003 17 C -0.332 4.332 18 C 0.376 3.624 19 O -0.437 6.437 20 O -0.284 6.284 21 C -0.062 4.062 22 C 0.092 3.908 23 C -0.152 4.152 24 N -0.305 5.305 25 H 0.071 0.929 26 H 0.089 0.911 27 H 0.071 0.929 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.103 0.897 33 H 0.065 0.935 34 H 0.089 0.911 35 H 0.147 0.853 36 H 0.171 0.829 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.148 0.852 40 H 0.098 0.902 41 H 0.114 0.886 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.642 3.009 5.757 7.448 hybrid contribution 0.738 0.961 -0.680 1.389 sum -2.904 3.970 5.077 7.069 Atomic orbital electron populations 1.21704 0.94352 1.02269 1.01672 1.21392 0.96946 0.95123 1.01767 1.21750 0.95141 0.97748 1.00430 1.21495 0.93520 0.83145 1.01874 1.42721 1.53084 1.11898 1.01404 1.19675 1.41724 0.98152 0.87419 0.88840 1.26341 0.93064 0.96018 1.04072 1.69971 1.27710 1.18839 1.34920 0.85029 0.79036 0.78572 0.76104 1.18659 1.20362 1.18997 1.19329 0.89992 0.91357 0.86428 1.21032 1.10165 0.98447 0.99577 1.21220 0.91253 0.97766 0.90035 1.19242 1.21625 1.00868 0.91496 1.20783 0.73145 0.79436 0.88995 1.90687 1.51109 1.65018 1.36846 1.86544 1.75815 1.30172 1.35861 1.23487 1.02207 0.99575 0.80891 1.21353 0.87476 0.88733 0.93260 1.20930 1.01593 1.00798 0.91893 1.67212 1.29221 1.36933 0.97171 0.92921 0.91145 0.92877 0.92314 0.91994 0.93461 0.93464 0.89725 0.93475 0.91143 0.85259 0.82932 0.91995 0.92130 0.85224 0.90231 0.88618 0.91176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.65 9.91 71.98 0.71 -2.93 16 2 C -0.11 -3.59 5.93 30.59 0.18 -3.41 16 3 C -0.11 -4.39 5.54 30.60 0.17 -4.22 16 4 C 0.12 5.67 4.94 86.38 0.43 6.09 16 5 N -0.41 -19.96 2.59 -517.95 -1.34 -21.30 16 6 C -0.34 -16.82 8.15 84.07 0.68 -16.14 16 7 H 0.09 4.49 7.30 -2.91 -0.02 4.47 16 8 C 0.01 0.51 5.00 84.90 0.42 0.94 16 9 N -0.88 -44.70 11.48 21.66 0.25 -44.45 16 10 Si 0.99 37.58 29.60 68.60 2.03 39.62 16 11 H -0.26 -9.61 7.11 99.48 0.71 -8.90 16 12 H -0.28 -10.40 7.11 99.48 0.71 -9.70 16 13 H -0.27 -9.84 7.11 99.48 0.71 -9.13 16 14 C 0.37 17.71 7.30 133.28 0.97 18.69 16 15 C -0.27 -11.65 9.20 22.24 0.20 -11.44 16 16 C 0.02 0.83 9.67 22.47 0.22 1.04 16 17 C -0.32 -12.60 5.89 -19.98 -0.12 -12.72 16 18 C 0.53 18.56 7.82 70.24 0.55 19.11 16 19 O -0.54 -19.86 13.13 19.79 0.26 -19.60 16 20 O -0.37 -10.88 9.90 -56.82 -0.56 -11.44 16 21 C 0.03 0.64 10.57 113.37 1.20 1.84 16 22 C 0.24 9.81 6.82 42.95 0.29 10.11 16 23 C -0.10 -3.29 8.91 71.23 0.63 -2.65 16 24 N -0.58 -26.58 9.10 -180.34 -1.64 -28.22 16 25 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.08 4.18 5.60 -2.39 -0.01 4.17 16 33 H 0.05 2.24 7.51 -2.39 -0.02 2.22 16 34 H 0.28 13.29 8.32 -92.71 -0.77 12.51 16 35 H 0.13 5.61 6.71 -2.91 -0.02 5.59 16 36 H 0.15 4.83 7.70 -2.91 -0.02 4.81 16 37 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.13 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 41 H 0.10 3.25 5.78 -2.39 -0.01 3.24 16 42 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 Total: -1.00 -57.82 349.37 6.55 -51.27 By element: Atomic # 1 Polarization: 28.82 SS G_CDS: 1.01 Total: 29.83 kcal Atomic # 6 Polarization: -2.25 SS G_CDS: 6.55 Total: 4.31 kcal Atomic # 7 Polarization: -91.24 SS G_CDS: -2.73 Total: -93.97 kcal Atomic # 8 Polarization: -30.75 SS G_CDS: -0.30 Total: -31.05 kcal Atomic # 14 Polarization: 37.58 SS G_CDS: 2.03 Total: 39.62 kcal Total: -57.82 6.55 -51.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167129044.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.665 kcal (2) G-P(sol) polarization free energy of solvation -57.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds