Wall clock time and date at job start Tue Mar 31 2020 07:28:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47705 * 2 1 4 4 C 1.53000 * 109.47271 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.46865 * 180.02562 * 4 3 2 6 6 C 1.36921 * 119.99819 * 93.97889 * 5 4 3 7 7 H 1.07997 * 119.99810 * 214.47935 * 6 5 4 8 8 C 1.38819 * 119.99771 * 34.48615 * 6 5 4 9 9 N 1.31559 * 120.00192 * 21.63986 * 8 6 5 10 10 Si 1.86798 * 119.99613 * 201.91498 * 8 6 5 11 11 H 1.48498 * 109.47244 * 90.00342 * 10 8 6 12 12 H 1.48504 * 109.47294 * 210.00343 * 10 8 6 13 13 H 1.48497 * 109.47540 * 329.99958 * 10 8 6 14 14 C 1.38829 * 119.99841 * 273.97392 * 5 4 3 15 15 C 1.39594 * 119.64028 * 185.00084 * 14 5 4 16 16 C 1.38256 * 119.29279 * 180.02562 * 15 14 5 17 17 C 1.38840 * 118.58305 * 359.97438 * 16 15 14 18 18 C 1.39222 * 119.23634 * 0.02562 * 17 16 15 19 19 C 1.48058 * 119.67987 * 179.97438 * 18 17 16 20 20 O 1.21426 * 119.99624 * 0.02562 * 19 18 17 21 21 O 1.34683 * 119.99636 * 179.97438 * 19 18 17 22 22 C 1.45199 * 116.99396 * 180.02562 * 21 19 18 23 23 C 1.53000 * 109.46805 * 180.02562 * 22 21 19 24 24 N 1.32132 * 119.64325 * 4.73862 * 14 5 4 25 25 H 1.09004 * 109.46996 * 300.00465 * 1 2 3 26 26 H 1.09009 * 109.47168 * 59.99527 * 1 2 3 27 27 H 1.09000 * 109.47527 * 179.97438 * 1 2 3 28 28 H 1.09009 * 109.46910 * 240.00000 * 2 1 3 29 29 H 1.08999 * 109.47353 * 120.00507 * 2 1 3 30 30 H 1.08998 * 109.46886 * 59.99561 * 3 2 1 31 31 H 1.08996 * 109.47198 * 300.00127 * 3 2 1 32 32 H 1.08992 * 109.47292 * 59.99957 * 4 3 2 33 33 H 1.08996 * 109.46930 * 300.00067 * 4 3 2 34 34 H 0.97002 * 119.99632 * 179.97438 * 9 8 6 35 35 H 1.07996 * 120.35280 * 359.97438 * 15 14 5 36 36 H 1.07995 * 120.71360 * 180.02562 * 16 15 14 37 37 H 1.08001 * 120.38282 * 179.97438 * 17 16 15 38 38 H 1.09003 * 109.47385 * 300.00030 * 22 21 19 39 39 H 1.08996 * 109.47640 * 60.00491 * 22 21 19 40 40 H 1.09004 * 109.47152 * 60.00290 * 23 22 21 41 41 H 1.09003 * 109.47319 * 180.02562 * 23 22 21 42 42 H 1.08996 * 109.47636 * 300.00040 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4423 -0.0006 5 7 4.0585 2.8236 0.0000 6 6 4.3648 3.4408 1.1831 7 1 4.1848 4.4990 1.3025 8 6 4.9067 2.7065 2.2291 9 7 5.5153 1.5657 1.9860 10 14 4.7652 3.3344 3.9827 11 1 3.5155 2.8160 4.5948 12 1 5.9335 2.8674 4.7716 13 1 4.7342 4.8191 3.9760 14 6 4.2108 3.5065 -1.1991 15 6 4.7747 4.7834 -1.1995 16 6 4.9225 5.4572 -2.3977 17 6 4.5025 4.8353 -3.5657 18 6 3.9481 3.5601 -3.4956 19 6 3.4963 2.8880 -4.7351 20 8 3.6107 3.4488 -5.8060 21 8 2.9596 1.6542 -4.6747 22 6 2.5393 1.0562 -5.9294 23 6 1.9586 -0.3339 -5.6624 24 7 3.8252 2.9386 -2.3282 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 1.6767 1.9563 0.8899 31 1 1.6768 1.9563 -0.8899 32 1 3.9330 0.9286 -0.8908 33 1 3.9337 0.9283 0.8891 34 1 5.8943 1.0529 2.7169 35 1 5.0913 5.2405 -0.2737 36 1 5.3563 6.4459 -2.4246 37 1 4.6039 5.3352 -4.5177 38 1 1.7791 1.6840 -6.3945 39 1 3.3971 0.9700 -6.5962 40 1 1.1005 -0.2473 -4.9957 41 1 1.6435 -0.7831 -6.6043 42 1 2.7183 -0.9619 -5.1971 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167129046.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:02 Heat of formation + Delta-G solvation = -52.815533 kcal Electronic energy + Delta-G solvation = -23775.117532 eV Core-core repulsion = 20334.245407 eV Total energy + Delta-G solvation = -3440.872125 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.16417 -38.99190 -36.61616 -36.08264 -34.10148 -32.20835 -31.93007 -31.17956 -29.58199 -28.03818 -25.09450 -24.55740 -23.15723 -22.48624 -21.00555 -20.58667 -20.19670 -18.05413 -17.06870 -16.55232 -16.26023 -15.64606 -15.14806 -14.89260 -14.74084 -14.19891 -14.09875 -13.65309 -13.41466 -13.25997 -12.87812 -12.73440 -12.49386 -12.19523 -11.99969 -11.80286 -11.57666 -11.50728 -11.42940 -11.24222 -11.03753 -10.62911 -10.50550 -10.41031 -10.35906 -10.30691 -10.23957 -9.82831 -9.39541 -9.04952 -8.61113 -8.53252 -6.94415 -6.44138 -4.05266 1.39520 2.34322 2.96971 3.02124 3.12794 3.14757 3.15442 3.90512 4.54509 4.60587 4.91809 4.99266 5.02689 5.09845 5.33000 5.46682 5.50019 5.56509 5.67397 5.73208 5.84741 6.00960 6.03529 6.08088 6.12240 6.18487 6.25157 6.39242 6.42413 6.45698 6.56662 6.68171 6.72210 6.84096 6.87292 7.03465 7.12808 7.24103 7.41062 7.46472 7.93001 8.04817 8.40907 8.81344 9.11687 9.63167 10.45575 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.013778 B = 0.005548 C = 0.004233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2031.740854 B = 5045.673630 C = 6612.487425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.118 4.118 3 C -0.126 4.126 4 C 0.120 3.880 5 N -0.411 5.411 6 C -0.315 4.315 7 H 0.093 0.907 8 C 0.040 3.960 9 N -0.851 5.851 10 Si 0.922 3.078 11 H -0.275 1.275 12 H -0.282 1.282 13 H -0.267 1.267 14 C 0.367 3.633 15 C -0.208 4.208 16 C -0.050 4.050 17 C -0.228 4.228 18 C 0.138 3.862 19 C 0.530 3.470 20 O -0.516 6.516 21 O -0.332 6.332 22 C 0.058 3.942 23 C -0.151 4.151 24 N -0.520 5.520 25 H 0.049 0.951 26 H 0.050 0.950 27 H 0.046 0.954 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.106 0.894 34 H 0.272 0.728 35 H 0.133 0.867 36 H 0.124 0.876 37 H 0.124 0.876 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.067 0.933 41 H 0.075 0.925 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.494 -1.709 -6.169 8.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.156 4.156 3 C -0.165 4.165 4 C -0.003 4.003 5 N -0.099 5.099 6 C -0.444 4.444 7 H 0.111 0.889 8 C -0.168 4.168 9 N -0.485 5.485 10 Si 0.748 3.252 11 H -0.200 1.200 12 H -0.208 1.208 13 H -0.192 1.192 14 C 0.126 3.874 15 C -0.236 4.236 16 C -0.075 4.075 17 C -0.256 4.256 18 C -0.002 4.002 19 C 0.375 3.625 20 O -0.405 6.405 21 O -0.247 6.247 22 C -0.016 4.016 23 C -0.208 4.208 24 N -0.243 5.243 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.065 0.935 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.123 0.877 34 H 0.083 0.917 35 H 0.151 0.849 36 H 0.142 0.858 37 H 0.142 0.858 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.093 0.907 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.754 -2.771 -6.051 8.798 hybrid contribution 0.350 1.061 0.638 1.287 sum -5.404 -1.710 -5.413 7.838 Atomic orbital electron populations 1.21748 0.96713 1.00591 1.01418 1.21406 0.94903 0.97748 1.01526 1.21899 0.97769 0.95486 1.01347 1.21532 0.91308 0.83755 1.03748 1.42486 1.55105 1.11591 1.00766 1.19459 1.41050 0.95922 0.87959 0.88921 1.25417 0.94100 0.96511 1.00730 1.69992 1.30688 1.14715 1.33121 0.85990 0.78093 0.79475 0.81598 1.20034 1.20772 1.19164 1.18687 0.92435 0.90454 0.85867 1.21548 1.06603 0.96506 0.98970 1.21018 0.96264 0.98558 0.91650 1.21155 1.09215 0.95993 0.99223 1.19327 0.99853 0.91687 0.89374 1.21254 0.73522 0.79178 0.88589 1.90762 1.53457 1.65787 1.30445 1.86760 1.71569 1.30764 1.35604 1.22992 0.99478 0.94625 0.84498 1.21771 1.02006 0.94430 1.02558 1.67068 1.23958 1.36436 0.96869 0.93174 0.93078 0.93488 0.92251 0.92481 0.92722 0.92497 0.92460 0.87679 0.91723 0.84915 0.85844 0.85785 0.91582 0.91542 0.91417 0.90663 0.91375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 9.91 37.15 0.37 -1.69 16 2 C -0.12 -1.94 5.93 -26.73 -0.16 -2.10 16 3 C -0.13 -2.50 5.53 -26.73 -0.15 -2.65 16 4 C 0.12 2.74 4.89 -4.04 -0.02 2.72 16 5 N -0.41 -9.93 2.65 -115.03 -0.30 -10.24 16 6 C -0.32 -7.71 8.45 -15.06 -0.13 -7.84 16 7 H 0.09 2.19 6.88 -52.49 -0.36 1.83 16 8 C 0.04 0.96 4.94 -17.45 -0.09 0.87 16 9 N -0.85 -21.56 11.32 55.49 0.63 -20.93 16 10 Si 0.92 18.72 29.61 -169.99 -5.03 13.69 16 11 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 12 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 13 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 14 C 0.37 8.58 7.32 -155.24 -1.14 7.45 16 15 C -0.21 -4.38 9.27 -39.07 -0.36 -4.75 16 16 C -0.05 -0.91 10.16 -39.35 -0.40 -1.31 16 17 C -0.23 -4.35 9.63 -38.99 -0.38 -4.73 16 18 C 0.14 2.90 6.74 -83.04 -0.56 2.34 16 19 C 0.53 10.39 7.95 34.76 0.28 10.67 16 20 O -0.52 -10.27 16.10 -19.21 -0.31 -10.58 16 21 O -0.33 -5.99 10.03 -40.45 -0.41 -6.40 16 22 C 0.06 0.79 6.19 37.16 0.23 1.02 16 23 C -0.15 -1.60 10.29 37.16 0.38 -1.21 16 24 N -0.52 -11.81 8.98 -9.00 -0.08 -11.89 16 25 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 26 H 0.05 0.70 8.14 -51.92 -0.42 0.28 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.96 8.14 -51.92 -0.42 0.54 16 29 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.06 1.35 7.58 -51.93 -0.39 0.96 16 33 H 0.11 2.57 5.34 -51.93 -0.28 2.29 16 34 H 0.27 6.50 8.31 -40.82 -0.34 6.16 16 35 H 0.13 2.73 6.49 -52.49 -0.34 2.39 16 36 H 0.12 1.80 8.06 -52.49 -0.42 1.38 16 37 H 0.12 2.17 7.63 -52.49 -0.40 1.76 16 38 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 39 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 355.21 15.07 5.35 5.35 Total: -1.00 -27.35 355.21 -8.67 -36.03 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -6.40 Total: 6.17 kcal Atomic # 6 Polarization: 0.91 SS G_CDS: -2.12 Total: -1.21 kcal Atomic # 7 Polarization: -43.30 SS G_CDS: 0.24 Total: -43.06 kcal Atomic # 8 Polarization: -16.26 SS G_CDS: -0.72 Total: -16.98 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -5.03 Total: 13.69 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -27.35 -8.67 -36.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167129046.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.790 kcal (2) G-P(sol) polarization free energy of solvation -27.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds