Wall clock time and date at job start Tue Mar 31 2020 07:28:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47705 * 2 1 4 4 C 1.53000 * 109.47271 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.46865 * 180.02562 * 4 3 2 6 6 C 1.36921 * 119.99819 * 93.97889 * 5 4 3 7 7 H 1.07997 * 119.99810 * 214.47935 * 6 5 4 8 8 C 1.38819 * 119.99771 * 34.48615 * 6 5 4 9 9 N 1.31559 * 120.00192 * 21.63986 * 8 6 5 10 10 Si 1.86798 * 119.99613 * 201.91498 * 8 6 5 11 11 H 1.48498 * 109.47244 * 90.00342 * 10 8 6 12 12 H 1.48504 * 109.47294 * 210.00343 * 10 8 6 13 13 H 1.48497 * 109.47540 * 329.99958 * 10 8 6 14 14 C 1.38829 * 119.99841 * 273.97392 * 5 4 3 15 15 C 1.39594 * 119.64028 * 185.00084 * 14 5 4 16 16 C 1.38256 * 119.29279 * 180.02562 * 15 14 5 17 17 C 1.38840 * 118.58305 * 359.97438 * 16 15 14 18 18 C 1.39222 * 119.23634 * 0.02562 * 17 16 15 19 19 C 1.48058 * 119.67987 * 179.97438 * 18 17 16 20 20 O 1.21426 * 119.99624 * 0.02562 * 19 18 17 21 21 O 1.34683 * 119.99636 * 179.97438 * 19 18 17 22 22 C 1.45199 * 116.99396 * 180.02562 * 21 19 18 23 23 C 1.53000 * 109.46805 * 180.02562 * 22 21 19 24 24 N 1.32132 * 119.64325 * 4.73862 * 14 5 4 25 25 H 1.09004 * 109.46996 * 300.00465 * 1 2 3 26 26 H 1.09009 * 109.47168 * 59.99527 * 1 2 3 27 27 H 1.09000 * 109.47527 * 179.97438 * 1 2 3 28 28 H 1.09009 * 109.46910 * 240.00000 * 2 1 3 29 29 H 1.08999 * 109.47353 * 120.00507 * 2 1 3 30 30 H 1.08998 * 109.46886 * 59.99561 * 3 2 1 31 31 H 1.08996 * 109.47198 * 300.00127 * 3 2 1 32 32 H 1.08992 * 109.47292 * 59.99957 * 4 3 2 33 33 H 1.08996 * 109.46930 * 300.00067 * 4 3 2 34 34 H 0.97002 * 119.99632 * 179.97438 * 9 8 6 35 35 H 1.07996 * 120.35280 * 359.97438 * 15 14 5 36 36 H 1.07995 * 120.71360 * 180.02562 * 16 15 14 37 37 H 1.08001 * 120.38282 * 179.97438 * 17 16 15 38 38 H 1.09003 * 109.47385 * 300.00030 * 22 21 19 39 39 H 1.08996 * 109.47640 * 60.00491 * 22 21 19 40 40 H 1.09004 * 109.47152 * 60.00290 * 23 22 21 41 41 H 1.09003 * 109.47319 * 180.02562 * 23 22 21 42 42 H 1.08996 * 109.47636 * 300.00040 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4423 -0.0006 5 7 4.0585 2.8236 0.0000 6 6 4.3648 3.4408 1.1831 7 1 4.1848 4.4990 1.3025 8 6 4.9067 2.7065 2.2291 9 7 5.5153 1.5657 1.9860 10 14 4.7652 3.3344 3.9827 11 1 3.5155 2.8160 4.5948 12 1 5.9335 2.8674 4.7716 13 1 4.7342 4.8191 3.9760 14 6 4.2108 3.5065 -1.1991 15 6 4.7747 4.7834 -1.1995 16 6 4.9225 5.4572 -2.3977 17 6 4.5025 4.8353 -3.5657 18 6 3.9481 3.5601 -3.4956 19 6 3.4963 2.8880 -4.7351 20 8 3.6107 3.4488 -5.8060 21 8 2.9596 1.6542 -4.6747 22 6 2.5393 1.0562 -5.9294 23 6 1.9586 -0.3339 -5.6624 24 7 3.8252 2.9386 -2.3282 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 1.6767 1.9563 0.8899 31 1 1.6768 1.9563 -0.8899 32 1 3.9330 0.9286 -0.8908 33 1 3.9337 0.9283 0.8891 34 1 5.8943 1.0529 2.7169 35 1 5.0913 5.2405 -0.2737 36 1 5.3563 6.4459 -2.4246 37 1 4.6039 5.3352 -4.5177 38 1 1.7791 1.6840 -6.3945 39 1 3.3971 0.9700 -6.5962 40 1 1.1005 -0.2473 -4.9957 41 1 1.6435 -0.7831 -6.6043 42 1 2.7183 -0.9619 -5.1971 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167129046.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:01 Heat of formation + Delta-G solvation = -64.634852 kcal Electronic energy + Delta-G solvation = -23775.630057 eV Core-core repulsion = 20334.245407 eV Total energy + Delta-G solvation = -3441.384649 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.67877 -40.60173 -38.22979 -37.57085 -35.58926 -33.95712 -33.37474 -32.41302 -31.16391 -29.62898 -26.75859 -26.09375 -24.63921 -23.71455 -22.50281 -22.13399 -21.80119 -19.64207 -18.65228 -18.23224 -17.59552 -17.21825 -16.85768 -16.49901 -16.25900 -15.74264 -15.51694 -15.10962 -15.00595 -14.60946 -14.28311 -14.02019 -13.73931 -13.61428 -13.49751 -13.19275 -13.09150 -12.92265 -12.84313 -12.63825 -12.47053 -12.14071 -12.05582 -11.92509 -11.88067 -11.75121 -11.51160 -11.43907 -11.12132 -10.67030 -10.35537 -10.19016 -8.71987 -8.21529 -5.91068 -0.20210 0.74123 1.43024 1.46864 1.56684 1.57115 1.62733 2.23727 2.84872 2.90111 3.27227 3.46629 4.01784 4.05704 4.10928 4.13078 4.21506 4.33380 4.35338 4.43409 4.50623 4.53411 4.65261 4.78231 4.90321 4.90919 4.92546 4.93892 5.03824 5.08552 5.09966 5.21258 5.28541 5.35682 5.37289 5.42083 5.46711 5.53412 5.63717 5.84736 6.16465 6.48176 6.70024 7.10572 7.34264 7.87996 8.67618 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.013778 B = 0.005548 C = 0.004233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2031.740854 B = 5045.673630 C = 6612.487425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.113 4.113 3 C -0.111 4.111 4 C 0.130 3.870 5 N -0.435 5.435 6 C -0.330 4.330 7 H 0.094 0.906 8 C 0.000 4.000 9 N -0.888 5.888 10 Si 0.986 3.014 11 H -0.273 1.273 12 H -0.283 1.283 13 H -0.258 1.258 14 C 0.348 3.652 15 C -0.223 4.223 16 C -0.033 4.033 17 C -0.215 4.215 18 C 0.115 3.885 19 C 0.532 3.468 20 O -0.522 6.522 21 O -0.347 6.347 22 C 0.048 3.952 23 C -0.145 4.145 24 N -0.538 5.538 25 H 0.051 0.949 26 H 0.051 0.949 27 H 0.070 0.930 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.044 0.956 31 H 0.043 0.957 32 H 0.037 0.963 33 H 0.087 0.913 34 H 0.273 0.727 35 H 0.134 0.866 36 H 0.170 0.830 37 H 0.147 0.853 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.064 0.936 41 H 0.109 0.891 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.245 -0.960 -7.000 9.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.152 4.152 3 C -0.150 4.150 4 C 0.006 3.994 5 N -0.126 5.126 6 C -0.458 4.458 7 H 0.111 0.889 8 C -0.204 4.204 9 N -0.524 5.524 10 Si 0.810 3.190 11 H -0.199 1.199 12 H -0.209 1.209 13 H -0.182 1.182 14 C 0.107 3.893 15 C -0.250 4.250 16 C -0.058 4.058 17 C -0.242 4.242 18 C -0.025 4.025 19 C 0.376 3.624 20 O -0.412 6.412 21 O -0.262 6.262 22 C -0.025 4.025 23 C -0.201 4.201 24 N -0.262 5.262 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.089 0.911 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.055 0.945 33 H 0.105 0.895 34 H 0.082 0.918 35 H 0.152 0.848 36 H 0.187 0.813 37 H 0.165 0.835 38 H 0.093 0.907 39 H 0.091 0.909 40 H 0.083 0.917 41 H 0.127 0.873 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.516 -2.009 -6.932 9.724 hybrid contribution 0.601 0.875 0.643 1.241 sum -5.915 -1.133 -6.289 8.708 Atomic orbital electron populations 1.21695 0.94339 1.02230 1.01567 1.21379 0.96929 0.95293 1.01561 1.21744 0.95757 0.97502 1.00012 1.21364 0.92951 0.83469 1.01645 1.42599 1.56990 1.11942 1.01096 1.19664 1.41313 0.96203 0.88621 0.88866 1.26187 0.93540 0.96638 1.03989 1.70094 1.32160 1.16101 1.34038 0.85021 0.77732 0.79268 0.76998 1.19894 1.20858 1.18224 1.19088 0.92875 0.91345 0.86013 1.21731 1.06945 0.96037 1.00316 1.21482 0.94434 0.99893 0.90001 1.21553 1.06984 0.95135 1.00527 1.19807 1.00410 0.92829 0.89425 1.21054 0.73599 0.79701 0.88019 1.90744 1.53978 1.66115 1.30353 1.86746 1.71148 1.30046 1.38270 1.23411 1.00120 0.95929 0.83021 1.21811 1.01450 0.92618 1.04256 1.67043 1.24573 1.37253 0.97312 0.92943 0.93017 0.91094 0.92212 0.92450 0.93711 0.93833 0.94458 0.89522 0.91755 0.84805 0.81296 0.83506 0.90671 0.90866 0.91721 0.87300 0.91968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.76 9.91 71.98 0.71 -3.04 16 2 C -0.11 -3.75 5.93 30.59 0.18 -3.57 16 3 C -0.11 -4.55 5.53 30.59 0.17 -4.38 16 4 C 0.13 6.19 4.89 86.38 0.42 6.62 16 5 N -0.43 -21.76 2.65 -517.84 -1.37 -23.13 16 6 C -0.33 -16.53 8.45 84.04 0.71 -15.82 16 7 H 0.09 4.50 6.88 -2.91 -0.02 4.48 16 8 C 0.00 0.00 4.94 84.87 0.42 0.42 16 9 N -0.89 -46.50 11.32 21.65 0.24 -46.25 16 10 Si 0.99 38.80 29.61 68.60 2.03 40.83 16 11 H -0.27 -10.60 7.11 99.48 0.71 -9.89 16 12 H -0.28 -11.06 7.11 99.48 0.71 -10.35 16 13 H -0.26 -9.67 7.11 99.48 0.71 -8.97 16 14 C 0.35 16.55 7.32 133.31 0.98 17.53 16 15 C -0.22 -9.26 9.27 22.60 0.21 -9.05 16 16 C -0.03 -1.14 10.16 22.42 0.23 -0.91 16 17 C -0.21 -7.74 9.63 22.65 0.22 -7.52 16 18 C 0.11 4.75 6.74 41.84 0.28 5.03 16 19 C 0.53 20.53 7.95 70.43 0.56 21.09 16 20 O -0.52 -20.07 16.10 20.07 0.32 -19.75 16 21 O -0.35 -12.45 10.03 -55.93 -0.56 -13.01 16 22 C 0.05 1.24 6.19 71.98 0.45 1.69 16 23 C -0.14 -2.81 10.29 71.98 0.74 -2.07 16 24 N -0.54 -24.87 8.98 -182.38 -1.64 -26.51 16 25 H 0.05 1.37 8.14 -2.38 -0.02 1.35 16 26 H 0.05 1.36 8.14 -2.38 -0.02 1.34 16 27 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.06 1.95 8.14 -2.38 -0.02 1.93 16 29 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.04 1.86 7.58 -2.39 -0.02 1.84 16 33 H 0.09 4.46 5.34 -2.39 -0.01 4.45 16 34 H 0.27 13.43 8.31 -92.71 -0.77 12.66 16 35 H 0.13 5.47 6.49 -2.91 -0.02 5.45 16 36 H 0.17 4.19 8.06 -2.91 -0.02 4.16 16 37 H 0.15 4.64 7.63 -2.91 -0.02 4.62 16 38 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 40 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 41 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -60.50 355.21 6.31 -54.19 By element: Atomic # 1 Polarization: 26.63 SS G_CDS: 1.00 Total: 27.64 kcal Atomic # 6 Polarization: -0.28 SS G_CDS: 6.28 Total: 6.00 kcal Atomic # 7 Polarization: -93.13 SS G_CDS: -2.76 Total: -95.89 kcal Atomic # 8 Polarization: -32.52 SS G_CDS: -0.24 Total: -32.76 kcal Atomic # 14 Polarization: 38.80 SS G_CDS: 2.03 Total: 40.83 kcal Total: -60.50 6.31 -54.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167129046.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.443 kcal (2) G-P(sol) polarization free energy of solvation -60.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds