Wall clock time and date at job start Tue Mar 31 2020 07:28:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46651 * 2 1 4 4 C 1.53005 * 109.46968 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.46975 * 179.97438 * 4 3 2 6 6 C 1.36919 * 119.99805 * 95.06601 * 5 4 3 7 7 H 1.08003 * 119.99907 * 214.25210 * 6 5 4 8 8 C 1.38818 * 120.00391 * 34.24415 * 6 5 4 9 9 N 1.31568 * 119.99786 * 23.38738 * 8 6 5 10 10 Si 1.86800 * 120.00568 * 203.38598 * 8 6 5 11 11 H 1.48501 * 109.47093 * 90.00060 * 10 8 6 12 12 H 1.48495 * 109.47151 * 210.00283 * 10 8 6 13 13 H 1.48498 * 109.46560 * 330.00242 * 10 8 6 14 14 C 1.38836 * 119.99987 * 274.78390 * 5 4 3 15 15 C 1.39590 * 119.63768 * 185.27709 * 14 5 4 16 16 C 1.38267 * 119.29017 * 179.97438 * 15 14 5 17 17 C 1.50697 * 120.70604 * 179.97438 * 16 15 14 18 18 C 1.38835 * 118.58120 * 0.02562 * 16 15 14 19 19 C 1.39218 * 119.23541 * 359.97438 * 18 16 15 20 20 C 1.48056 * 119.67936 * 180.02562 * 19 18 16 21 21 O 1.21440 * 119.99968 * 359.97438 * 20 19 18 22 22 O 1.34683 * 120.00427 * 180.02562 * 20 19 18 23 23 C 1.45203 * 117.00231 * 179.97438 * 22 20 19 24 24 N 1.32126 * 119.64262 * 5.00589 * 14 5 4 25 25 H 1.08998 * 109.47283 * 60.00058 * 1 2 3 26 26 H 1.09005 * 109.46458 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46638 * 299.99372 * 1 2 3 28 28 H 1.09004 * 109.47070 * 240.00383 * 2 1 3 29 29 H 1.08992 * 109.47406 * 120.00364 * 2 1 3 30 30 H 1.09001 * 109.47087 * 60.00903 * 3 2 1 31 31 H 1.09003 * 109.47668 * 299.99829 * 3 2 1 32 32 H 1.09004 * 109.47004 * 60.00229 * 4 3 2 33 33 H 1.08992 * 109.47154 * 300.00404 * 4 3 2 34 34 H 0.97001 * 120.00188 * 179.97438 * 9 8 6 35 35 H 1.07997 * 120.36185 * 0.02562 * 15 14 5 36 36 H 1.09002 * 109.46954 * 90.00938 * 17 16 15 37 37 H 1.09004 * 109.47050 * 210.00173 * 17 16 15 38 38 H 1.09000 * 109.47729 * 330.00242 * 17 16 15 39 39 H 1.07998 * 120.37847 * 180.02562 * 18 16 15 40 40 H 1.09003 * 109.47050 * 59.99659 * 23 22 20 41 41 H 1.09000 * 109.47007 * 179.97438 * 23 22 20 42 42 H 1.08993 * 109.47022 * 299.99945 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 7 4.0582 2.8239 -0.0013 6 6 4.3855 3.4348 1.1796 7 1 4.2110 4.4930 1.3066 8 6 4.9415 2.6940 2.2136 9 7 5.5721 1.5693 1.9518 10 14 4.7946 3.2939 3.9765 11 1 3.5547 2.7469 4.5838 12 1 5.9720 2.8338 4.7557 13 1 4.7402 4.7778 3.9914 14 6 4.1944 3.5114 -1.1997 15 6 4.7635 4.7861 -1.2034 16 6 4.8962 5.4641 -2.4010 17 6 5.5054 6.8419 -2.4419 18 6 4.4553 4.8490 -3.5650 19 6 3.8969 3.5759 -3.4916 20 6 3.4240 2.9105 -4.7268 21 8 3.5238 3.4754 -5.7971 22 8 2.8822 1.6791 -4.6633 23 6 2.4399 1.0882 -5.9138 24 7 3.7891 2.9500 -2.3249 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3632 -1.0278 -0.0005 27 1 -0.3632 0.5138 0.8901 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 1.6766 1.9563 0.8901 31 1 1.6766 1.9564 -0.8900 32 1 3.9329 0.9290 -0.8909 33 1 3.9336 0.9287 0.8890 34 1 5.9610 1.0518 2.6743 35 1 5.0973 5.2376 -0.2808 36 1 6.5829 6.7586 -2.5839 37 1 5.0726 7.4062 -3.2680 38 1 5.3013 7.3575 -1.5035 39 1 4.5453 5.3521 -4.5164 40 1 3.2871 1.0007 -6.5941 41 1 2.0252 0.0987 -5.7214 42 1 1.6758 1.7214 -6.3645 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167132478.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:09 Heat of formation + Delta-G solvation = -53.433287 kcal Electronic energy + Delta-G solvation = -23832.162373 eV Core-core repulsion = 20391.263460 eV Total energy + Delta-G solvation = -3440.898913 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.16841 -39.05294 -36.63307 -35.99301 -34.11008 -33.22147 -32.06887 -29.73499 -28.29172 -27.54109 -26.86220 -25.02164 -23.74149 -22.78399 -20.66799 -20.42397 -19.88279 -17.74181 -17.00793 -16.44533 -16.02150 -15.72096 -15.30503 -14.87751 -14.73780 -14.28999 -13.89423 -13.50525 -13.39517 -13.33431 -12.98392 -12.50012 -12.34001 -12.11843 -11.97394 -11.89964 -11.85210 -11.55836 -11.37983 -11.21768 -10.95217 -10.62880 -10.50941 -10.50576 -10.41006 -10.35550 -10.23322 -9.80773 -9.37353 -8.74904 -8.57188 -8.54057 -6.94507 -6.44635 -4.03606 1.39626 2.30371 3.01433 3.03928 3.13205 3.15137 3.15436 3.91210 4.55028 4.59772 4.94025 5.03152 5.26370 5.32720 5.37799 5.50062 5.52340 5.61426 5.67462 5.70698 5.96443 5.99389 6.04878 6.09507 6.15438 6.25431 6.32040 6.40346 6.44034 6.50778 6.57752 6.64642 6.71989 6.80061 6.86010 7.04175 7.18648 7.26024 7.39731 7.47445 7.93072 8.03767 8.41082 8.82499 9.12464 9.64410 10.45583 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.012118 B = 0.006165 C = 0.004381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2310.037811 B = 4540.446545 C = 6390.186849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.118 4.118 3 C -0.127 4.127 4 C 0.123 3.877 5 N -0.411 5.411 6 C -0.316 4.316 7 H 0.093 0.907 8 C 0.040 3.960 9 N -0.849 5.849 10 Si 0.921 3.079 11 H -0.275 1.275 12 H -0.282 1.282 13 H -0.267 1.267 14 C 0.370 3.630 15 C -0.208 4.208 16 C -0.022 4.022 17 C -0.106 4.106 18 C -0.225 4.225 19 C 0.140 3.860 20 C 0.529 3.471 21 O -0.515 6.515 22 O -0.333 6.333 23 C 0.033 3.967 24 N -0.523 5.523 25 H 0.050 0.950 26 H 0.046 0.954 27 H 0.049 0.951 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.102 0.898 34 H 0.272 0.728 35 H 0.133 0.867 36 H 0.069 0.931 37 H 0.063 0.937 38 H 0.066 0.934 39 H 0.124 0.876 40 H 0.059 0.941 41 H 0.098 0.902 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.543 0.511 -5.405 7.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.156 4.156 3 C -0.166 4.166 4 C -0.001 4.001 5 N -0.100 5.100 6 C -0.445 4.445 7 H 0.111 0.889 8 C -0.167 4.167 9 N -0.483 5.483 10 Si 0.747 3.253 11 H -0.200 1.200 12 H -0.208 1.208 13 H -0.192 1.192 14 C 0.129 3.871 15 C -0.235 4.235 16 C -0.029 4.029 17 C -0.163 4.163 18 C -0.253 4.253 19 C 0.000 4.000 20 C 0.374 3.626 21 O -0.403 6.403 22 O -0.248 6.248 23 C -0.061 4.061 24 N -0.247 5.247 25 H 0.069 0.931 26 H 0.065 0.935 27 H 0.068 0.932 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.120 0.880 34 H 0.083 0.917 35 H 0.151 0.849 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.142 0.858 40 H 0.078 0.922 41 H 0.117 0.883 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.797 -0.535 -5.289 7.160 hybrid contribution 0.295 0.889 0.608 1.116 sum -4.501 0.353 -4.681 6.504 Atomic orbital electron populations 1.21748 0.96699 1.00598 1.01429 1.21409 0.94928 0.97742 1.01530 1.21910 0.97728 0.95509 1.01423 1.21481 0.91328 0.83719 1.03535 1.42480 1.55028 1.11575 1.00903 1.19438 1.40620 0.95949 0.88471 0.88944 1.25406 0.93986 0.96570 1.00750 1.70040 1.29476 1.15361 1.33418 0.86018 0.78084 0.79479 0.81744 1.20025 1.20793 1.19160 1.18638 0.92327 0.90383 0.85780 1.21399 1.07176 0.96545 0.98405 1.19749 0.95324 0.95500 0.92317 1.20695 1.00415 0.92864 1.02321 1.21010 1.09491 0.96089 0.98711 1.19273 0.99713 0.91611 0.89432 1.21290 0.73626 0.79214 0.88505 1.90767 1.53816 1.65391 1.30366 1.86763 1.71176 1.31237 1.35627 1.23236 0.99743 0.98306 0.84798 1.67061 1.24247 1.36383 0.96963 0.93051 0.93489 0.93174 0.92229 0.92495 0.92718 0.92363 0.92469 0.88004 0.91741 0.84942 0.91276 0.91801 0.91550 0.85801 0.92213 0.88324 0.92240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 9.91 37.16 0.37 -1.70 16 2 C -0.12 -1.95 5.93 -26.73 -0.16 -2.11 16 3 C -0.13 -2.52 5.52 -26.73 -0.15 -2.66 16 4 C 0.12 2.81 4.88 -4.04 -0.02 2.79 16 5 N -0.41 -9.98 2.65 -115.02 -0.30 -10.28 16 6 C -0.32 -7.76 8.44 -15.07 -0.13 -7.89 16 7 H 0.09 2.20 6.89 -52.48 -0.36 1.84 16 8 C 0.04 0.98 4.88 -17.45 -0.09 0.89 16 9 N -0.85 -21.57 11.43 55.49 0.63 -20.93 16 10 Si 0.92 18.75 29.61 -169.99 -5.03 13.72 16 11 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 12 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 13 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 14 C 0.37 8.70 7.32 -155.24 -1.14 7.56 16 15 C -0.21 -4.42 8.97 -39.07 -0.35 -4.77 16 16 C -0.02 -0.41 5.91 -104.39 -0.62 -1.03 16 17 C -0.11 -1.50 10.06 36.00 0.36 -1.13 16 18 C -0.22 -4.35 9.33 -39.00 -0.36 -4.71 16 19 C 0.14 2.95 6.74 -83.04 -0.56 2.39 16 20 C 0.53 10.36 7.95 34.76 0.28 10.63 16 21 O -0.52 -10.21 16.10 -19.22 -0.31 -10.52 16 22 O -0.33 -5.98 10.38 -40.45 -0.42 -6.40 16 23 C 0.03 0.42 10.56 101.05 1.07 1.49 16 24 N -0.52 -11.93 8.96 -9.00 -0.08 -12.01 16 25 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 32 H 0.06 1.35 7.61 -51.93 -0.40 0.96 16 33 H 0.10 2.49 5.41 -51.93 -0.28 2.20 16 34 H 0.27 6.51 8.31 -40.82 -0.34 6.17 16 35 H 0.13 2.77 6.49 -52.49 -0.34 2.43 16 36 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.06 0.79 8.10 -51.93 -0.42 0.37 16 38 H 0.07 0.87 8.10 -51.93 -0.42 0.45 16 39 H 0.12 2.20 7.63 -52.49 -0.40 1.80 16 40 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 354.92 15.07 5.35 5.35 Total: -1.00 -27.70 354.92 -8.06 -35.76 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -6.40 Total: 5.57 kcal Atomic # 6 Polarization: 1.25 SS G_CDS: -1.49 Total: -0.24 kcal Atomic # 7 Polarization: -43.48 SS G_CDS: 0.25 Total: -43.23 kcal Atomic # 8 Polarization: -16.20 SS G_CDS: -0.73 Total: -16.93 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -5.03 Total: 13.72 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -27.70 -8.06 -35.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167132478.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.673 kcal (2) G-P(sol) polarization free energy of solvation -27.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds