Wall clock time and date at job start Tue Mar 31 2020 07:28:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46651 * 2 1 4 4 C 1.53005 * 109.46968 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.46975 * 179.97438 * 4 3 2 6 6 C 1.36919 * 119.99805 * 95.06601 * 5 4 3 7 7 H 1.08003 * 119.99907 * 214.25210 * 6 5 4 8 8 C 1.38818 * 120.00391 * 34.24415 * 6 5 4 9 9 N 1.31568 * 119.99786 * 23.38738 * 8 6 5 10 10 Si 1.86800 * 120.00568 * 203.38598 * 8 6 5 11 11 H 1.48501 * 109.47093 * 90.00060 * 10 8 6 12 12 H 1.48495 * 109.47151 * 210.00283 * 10 8 6 13 13 H 1.48498 * 109.46560 * 330.00242 * 10 8 6 14 14 C 1.38836 * 119.99987 * 274.78390 * 5 4 3 15 15 C 1.39590 * 119.63768 * 185.27709 * 14 5 4 16 16 C 1.38267 * 119.29017 * 179.97438 * 15 14 5 17 17 C 1.50697 * 120.70604 * 179.97438 * 16 15 14 18 18 C 1.38835 * 118.58120 * 0.02562 * 16 15 14 19 19 C 1.39218 * 119.23541 * 359.97438 * 18 16 15 20 20 C 1.48056 * 119.67936 * 180.02562 * 19 18 16 21 21 O 1.21440 * 119.99968 * 359.97438 * 20 19 18 22 22 O 1.34683 * 120.00427 * 180.02562 * 20 19 18 23 23 C 1.45203 * 117.00231 * 179.97438 * 22 20 19 24 24 N 1.32126 * 119.64262 * 5.00589 * 14 5 4 25 25 H 1.08998 * 109.47283 * 60.00058 * 1 2 3 26 26 H 1.09005 * 109.46458 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46638 * 299.99372 * 1 2 3 28 28 H 1.09004 * 109.47070 * 240.00383 * 2 1 3 29 29 H 1.08992 * 109.47406 * 120.00364 * 2 1 3 30 30 H 1.09001 * 109.47087 * 60.00903 * 3 2 1 31 31 H 1.09003 * 109.47668 * 299.99829 * 3 2 1 32 32 H 1.09004 * 109.47004 * 60.00229 * 4 3 2 33 33 H 1.08992 * 109.47154 * 300.00404 * 4 3 2 34 34 H 0.97001 * 120.00188 * 179.97438 * 9 8 6 35 35 H 1.07997 * 120.36185 * 0.02562 * 15 14 5 36 36 H 1.09002 * 109.46954 * 90.00938 * 17 16 15 37 37 H 1.09004 * 109.47050 * 210.00173 * 17 16 15 38 38 H 1.09000 * 109.47729 * 330.00242 * 17 16 15 39 39 H 1.07998 * 120.37847 * 180.02562 * 18 16 15 40 40 H 1.09003 * 109.47050 * 59.99659 * 23 22 20 41 41 H 1.09000 * 109.47007 * 179.97438 * 23 22 20 42 42 H 1.08993 * 109.47022 * 299.99945 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 7 4.0582 2.8239 -0.0013 6 6 4.3855 3.4348 1.1796 7 1 4.2110 4.4930 1.3066 8 6 4.9415 2.6940 2.2136 9 7 5.5721 1.5693 1.9518 10 14 4.7946 3.2939 3.9765 11 1 3.5547 2.7469 4.5838 12 1 5.9720 2.8338 4.7557 13 1 4.7402 4.7778 3.9914 14 6 4.1944 3.5114 -1.1997 15 6 4.7635 4.7861 -1.2034 16 6 4.8962 5.4641 -2.4010 17 6 5.5054 6.8419 -2.4419 18 6 4.4553 4.8490 -3.5650 19 6 3.8969 3.5759 -3.4916 20 6 3.4240 2.9105 -4.7268 21 8 3.5238 3.4754 -5.7971 22 8 2.8822 1.6791 -4.6633 23 6 2.4399 1.0882 -5.9138 24 7 3.7891 2.9500 -2.3249 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3632 -1.0278 -0.0005 27 1 -0.3632 0.5138 0.8901 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 1.6766 1.9563 0.8901 31 1 1.6766 1.9564 -0.8900 32 1 3.9329 0.9290 -0.8909 33 1 3.9336 0.9287 0.8890 34 1 5.9610 1.0518 2.6743 35 1 5.0973 5.2376 -0.2808 36 1 6.5829 6.7586 -2.5839 37 1 5.0726 7.4062 -3.2680 38 1 5.3013 7.3575 -1.5035 39 1 4.5453 5.3521 -4.5164 40 1 3.2871 1.0007 -6.5941 41 1 2.0252 0.0987 -5.7214 42 1 1.6758 1.7214 -6.3645 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167132478.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:09 Heat of formation + Delta-G solvation = -65.904202 kcal Electronic energy + Delta-G solvation = -23832.703152 eV Core-core repulsion = 20391.263460 eV Total energy + Delta-G solvation = -3441.439692 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.69337 -40.64926 -38.28540 -37.45551 -35.59631 -34.75876 -33.82382 -31.32092 -29.84575 -28.74092 -28.23649 -26.74284 -25.25462 -24.32229 -22.23154 -21.92463 -21.47199 -19.38420 -18.54905 -18.10011 -17.41013 -17.31690 -16.95852 -16.52515 -16.27376 -15.81624 -15.45606 -15.14551 -14.71715 -14.68641 -14.21296 -13.89593 -13.78376 -13.63908 -13.37362 -13.26892 -13.12992 -12.98123 -12.94098 -12.81144 -12.43850 -12.14389 -12.05304 -11.93191 -11.86854 -11.78598 -11.74797 -11.42709 -11.11375 -10.41759 -10.23567 -10.19534 -8.73334 -8.23115 -5.90541 -0.20909 0.69831 1.41754 1.46320 1.55985 1.56732 1.68656 2.23548 2.82676 2.89892 3.24408 3.50014 3.98947 4.12466 4.18566 4.28853 4.34131 4.34304 4.38964 4.45480 4.51353 4.57433 4.62551 4.72120 4.88707 4.90309 4.93246 5.00540 5.03655 5.07622 5.15223 5.19070 5.20695 5.24712 5.37278 5.41677 5.46678 5.61497 5.64560 5.86690 6.16212 6.47251 6.69097 7.10562 7.33909 7.87979 8.66606 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.012118 B = 0.006165 C = 0.004381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2310.037811 B = 4540.446545 C = 6390.186849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.114 4.114 3 C -0.112 4.112 4 C 0.132 3.868 5 N -0.435 5.435 6 C -0.331 4.331 7 H 0.092 0.908 8 C 0.001 3.999 9 N -0.886 5.886 10 Si 0.985 3.015 11 H -0.273 1.273 12 H -0.283 1.283 13 H -0.259 1.259 14 C 0.352 3.648 15 C -0.226 4.226 16 C -0.011 4.011 17 C -0.104 4.104 18 C -0.216 4.216 19 C 0.118 3.882 20 C 0.532 3.468 21 O -0.521 6.521 22 O -0.349 6.349 23 C 0.025 3.975 24 N -0.541 5.541 25 H 0.051 0.949 26 H 0.070 0.930 27 H 0.052 0.948 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.044 0.956 31 H 0.044 0.956 32 H 0.037 0.963 33 H 0.084 0.916 34 H 0.273 0.727 35 H 0.131 0.869 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.077 0.923 39 H 0.146 0.854 40 H 0.067 0.933 41 H 0.129 0.871 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.189 1.481 -6.150 8.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.152 4.152 3 C -0.151 4.151 4 C 0.009 3.991 5 N -0.126 5.126 6 C -0.459 4.459 7 H 0.110 0.890 8 C -0.203 4.203 9 N -0.522 5.522 10 Si 0.809 3.191 11 H -0.198 1.198 12 H -0.208 1.208 13 H -0.182 1.182 14 C 0.111 3.889 15 C -0.253 4.253 16 C -0.018 4.018 17 C -0.160 4.160 18 C -0.243 4.243 19 C -0.021 4.021 20 C 0.376 3.624 21 O -0.410 6.410 22 O -0.264 6.264 23 C -0.067 4.067 24 N -0.265 5.265 25 H 0.070 0.930 26 H 0.089 0.911 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.056 0.944 33 H 0.102 0.898 34 H 0.083 0.917 35 H 0.149 0.851 36 H 0.104 0.896 37 H 0.106 0.894 38 H 0.096 0.904 39 H 0.163 0.837 40 H 0.085 0.915 41 H 0.148 0.852 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.456 0.450 -6.082 8.183 hybrid contribution 0.510 0.623 0.589 0.997 sum -4.946 1.073 -5.494 7.470 Atomic orbital electron populations 1.21696 0.94331 1.02232 1.01585 1.21384 0.96948 0.95265 1.01597 1.21758 0.95673 0.97556 1.00120 1.21322 0.93005 0.83360 1.01457 1.42605 1.56835 1.11956 1.01211 1.19629 1.40948 0.96191 0.89151 0.89029 1.26182 0.93376 0.96658 1.04064 1.70136 1.30905 1.16746 1.34387 0.85042 0.77760 0.79303 0.77035 1.19839 1.20813 1.18249 1.19027 0.92678 0.91190 0.85974 1.21551 1.07916 0.96258 0.99591 1.20262 0.93550 0.97166 0.90858 1.20806 1.01119 0.90037 1.04044 1.21388 1.07644 0.95408 0.99853 1.19770 1.00089 0.92657 0.89577 1.21043 0.73728 0.79789 0.87832 1.90750 1.54310 1.65729 1.30233 1.86730 1.70757 1.30408 1.38494 1.23640 1.00352 0.99615 0.83140 1.67048 1.24931 1.37150 0.97383 0.92993 0.91105 0.92932 0.92167 0.92425 0.93672 0.93688 0.94437 0.89826 0.91737 0.85089 0.89628 0.89417 0.90404 0.83653 0.91474 0.85249 0.91290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.76 9.91 71.98 0.71 -3.05 16 2 C -0.11 -3.76 5.93 30.59 0.18 -3.58 16 3 C -0.11 -4.60 5.52 30.60 0.17 -4.43 16 4 C 0.13 6.35 4.88 86.38 0.42 6.77 16 5 N -0.43 -21.94 2.65 -517.83 -1.37 -23.31 16 6 C -0.33 -16.74 8.44 84.04 0.71 -16.03 16 7 H 0.09 4.48 6.89 -2.91 -0.02 4.46 16 8 C 0.00 0.05 4.88 84.87 0.41 0.46 16 9 N -0.89 -46.58 11.43 21.65 0.25 -46.34 16 10 Si 0.99 38.94 29.61 68.60 2.03 40.97 16 11 H -0.27 -10.61 7.11 99.48 0.71 -9.91 16 12 H -0.28 -11.07 7.11 99.48 0.71 -10.36 16 13 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 14 C 0.35 16.98 7.32 133.31 0.98 17.96 16 15 C -0.23 -9.66 8.97 22.60 0.20 -9.46 16 16 C -0.01 -0.40 5.91 -19.72 -0.12 -0.52 16 17 C -0.10 -2.59 10.06 71.23 0.72 -1.87 16 18 C -0.22 -8.00 9.33 22.65 0.21 -7.79 16 19 C 0.12 4.96 6.74 41.83 0.28 5.24 16 20 C 0.53 20.45 7.95 70.43 0.56 21.01 16 21 O -0.52 -19.90 16.10 20.03 0.32 -19.58 16 22 O -0.35 -12.31 10.38 -55.92 -0.58 -12.89 16 23 C 0.03 0.60 10.56 113.37 1.20 1.80 16 24 N -0.54 -25.25 8.96 -182.39 -1.63 -26.88 16 25 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 27 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 29 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.04 1.93 8.10 -2.39 -0.02 1.91 16 32 H 0.04 1.88 7.61 -2.38 -0.02 1.86 16 33 H 0.08 4.30 5.41 -2.39 -0.01 4.29 16 34 H 0.27 13.48 8.31 -92.71 -0.77 12.71 16 35 H 0.13 5.56 6.49 -2.91 -0.02 5.54 16 36 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.09 1.81 8.10 -2.38 -0.02 1.79 16 38 H 0.08 1.80 8.10 -2.39 -0.02 1.78 16 39 H 0.15 4.76 7.63 -2.91 -0.02 4.74 16 40 H 0.07 1.48 8.14 -2.39 -0.02 1.47 16 41 H 0.13 2.21 8.14 -2.39 -0.02 2.19 16 42 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -61.44 354.92 6.66 -54.78 By element: Atomic # 1 Polarization: 25.74 SS G_CDS: 1.01 Total: 26.74 kcal Atomic # 6 Polarization: -0.12 SS G_CDS: 6.64 Total: 6.52 kcal Atomic # 7 Polarization: -93.77 SS G_CDS: -2.76 Total: -96.53 kcal Atomic # 8 Polarization: -32.22 SS G_CDS: -0.26 Total: -32.47 kcal Atomic # 14 Polarization: 38.94 SS G_CDS: 2.03 Total: 40.97 kcal Total: -61.44 6.66 -54.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167132478.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.128 kcal (2) G-P(sol) polarization free energy of solvation -61.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds