Wall clock time and date at job start Tue Mar 31 2020 07:28:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47109 * 2 1 4 4 C 1.53001 * 109.47109 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47000 * 179.97438 * 4 3 2 6 6 C 1.36894 * 120.00558 * 280.22773 * 5 4 3 7 7 H 1.08001 * 120.00055 * 39.60277 * 6 5 4 8 8 C 1.39024 * 120.00431 * 219.60174 * 6 5 4 9 9 N 1.31387 * 119.99721 * 19.73340 * 8 6 5 10 10 Si 1.86800 * 120.00244 * 199.72813 * 8 6 5 11 11 H 1.48494 * 109.47260 * 0.02562 * 10 8 6 12 12 H 1.48511 * 109.46715 * 120.00143 * 10 8 6 13 13 H 1.48500 * 109.47268 * 239.99797 * 10 8 6 14 14 C 1.34777 * 119.99483 * 100.22784 * 5 4 3 15 15 O 1.21633 * 119.99748 * 187.30690 * 14 5 4 16 16 C 1.47419 * 120.00603 * 7.30728 * 14 5 4 17 17 C 1.40043 * 120.59867 * 330.44022 * 16 14 5 18 18 C 1.38329 * 118.34670 * 179.70807 * 17 16 14 19 19 C 1.38373 * 119.45600 * 0.52689 * 18 17 16 20 20 C 1.50705 * 119.39583 * 179.73276 * 19 18 17 21 21 N 1.31892 * 121.20200 * 359.45372 * 19 18 17 22 22 C 1.32224 * 121.80357 * 0.27759 * 21 19 18 23 23 O 1.35427 * 119.79821 * 179.97438 * 22 21 19 24 24 C 1.42902 * 117.00560 * 359.97438 * 23 22 21 25 25 H 1.09003 * 109.46705 * 59.99851 * 1 2 3 26 26 H 1.08997 * 109.47134 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47398 * 300.00369 * 1 2 3 28 28 H 1.08999 * 109.47192 * 240.00357 * 2 1 3 29 29 H 1.08998 * 109.47401 * 120.00105 * 2 1 3 30 30 H 1.09000 * 109.47319 * 60.00044 * 3 2 1 31 31 H 1.08997 * 109.47016 * 299.99751 * 3 2 1 32 32 H 1.08999 * 109.47192 * 60.00357 * 4 3 2 33 33 H 1.08997 * 109.46978 * 299.99774 * 4 3 2 34 34 H 0.96998 * 119.99960 * 184.92598 * 9 8 6 35 35 H 1.08005 * 120.83349 * 359.97438 * 17 16 14 36 36 H 1.08001 * 120.27179 * 180.27557 * 18 17 16 37 37 H 1.09001 * 109.46958 * 269.72804 * 20 19 18 38 38 H 1.08998 * 109.47121 * 149.73385 * 20 19 18 39 39 H 1.09001 * 109.47441 * 29.72610 * 20 19 18 40 40 H 1.08995 * 109.46652 * 60.00178 * 24 23 22 41 41 H 1.08998 * 109.47245 * 179.97438 * 24 23 22 42 42 H 1.08991 * 109.47037 * 300.00304 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8237 0.0000 6 6 4.0885 3.5387 -1.1670 7 1 3.2790 3.4490 -1.8763 8 6 5.1612 4.3801 -1.4393 9 7 6.3015 4.2162 -0.8075 10 14 4.9814 5.7436 -2.7034 11 1 3.6084 5.7169 -3.2684 12 1 5.2231 7.0566 -2.0529 13 1 5.9697 5.5417 -3.7932 14 6 4.4778 3.3906 1.1486 15 8 4.7572 4.5741 1.1760 16 6 4.5981 2.5764 2.3716 17 6 3.7660 1.4685 2.5751 18 6 3.9231 0.7336 3.7365 19 6 4.8803 1.1163 4.6596 20 6 5.0461 0.3182 5.9272 21 7 5.6537 2.1634 4.4479 22 6 5.5490 2.8969 3.3527 23 8 6.3640 3.9642 3.1771 24 6 7.3089 4.2366 4.2139 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.6767 1.9564 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.9337 0.9286 -0.8891 33 1 3.9329 0.9289 0.8909 34 1 7.0265 4.8459 -0.9441 35 1 3.0230 1.1921 1.8416 36 1 3.3011 -0.1293 3.9231 37 1 4.3986 0.7285 6.7022 38 1 6.0840 0.3701 6.2560 39 1 4.7756 -0.7210 5.7404 40 1 7.9711 3.3795 4.3362 41 1 7.8973 5.1147 3.9478 42 1 6.7795 4.4230 5.1482 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001190805149.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:19 Heat of formation + Delta-G solvation = -30.431397 kcal Electronic energy + Delta-G solvation = -24506.199737 eV Core-core repulsion = 21066.298261 eV Total energy + Delta-G solvation = -3439.901476 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.93309 -40.01955 -38.95584 -37.17587 -35.20822 -34.30734 -33.15126 -32.64700 -29.76067 -29.25761 -28.11748 -26.52709 -24.57220 -24.09798 -23.29627 -21.87494 -21.61874 -19.21136 -18.70652 -17.81320 -17.59149 -17.01473 -16.74528 -16.64178 -15.77217 -15.48857 -15.31257 -15.03654 -14.91092 -14.78314 -14.29528 -14.10297 -13.54955 -13.45804 -13.30443 -13.18994 -13.06765 -12.86943 -12.79186 -12.60948 -12.57704 -12.21396 -12.14799 -12.09982 -11.85533 -11.72171 -11.39428 -10.85381 -10.71112 -10.57307 -10.00018 -9.30413 -9.13341 -8.20453 -5.96180 -0.07951 0.30272 1.35514 1.43334 1.51528 2.19836 2.29177 2.42600 2.85531 3.12764 3.31298 3.33353 3.80621 3.96260 4.05821 4.10461 4.24563 4.31149 4.35902 4.36194 4.38162 4.47856 4.58920 4.63123 4.71146 4.76615 4.87601 4.89395 4.99939 5.02185 5.08425 5.14247 5.20606 5.21994 5.40167 5.43929 5.49414 5.58844 5.62364 6.15575 6.38733 6.85418 7.00772 7.24753 7.65050 8.36407 8.85916 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.011333 B = 0.007601 C = 0.004728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2470.122168 B = 3682.808304 C = 5921.115788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.117 4.117 3 C -0.129 4.129 4 C 0.069 3.931 5 N -0.460 5.460 6 C -0.355 4.355 7 H 0.087 0.913 8 C 0.015 3.985 9 N -0.864 5.864 10 Si 0.969 3.031 11 H -0.254 1.254 12 H -0.297 1.297 13 H -0.274 1.274 14 C 0.510 3.490 15 O -0.580 6.580 16 C -0.221 4.221 17 C -0.050 4.050 18 C -0.206 4.206 19 C 0.161 3.839 20 C -0.097 4.097 21 N -0.555 5.555 22 C 0.338 3.662 23 O -0.309 6.309 24 C 0.038 3.962 25 H 0.045 0.955 26 H 0.071 0.929 27 H 0.055 0.945 28 H 0.067 0.933 29 H 0.081 0.919 30 H 0.058 0.942 31 H 0.054 0.946 32 H 0.058 0.942 33 H 0.100 0.900 34 H 0.258 0.742 35 H 0.187 0.813 36 H 0.189 0.811 37 H 0.096 0.904 38 H 0.073 0.927 39 H 0.110 0.890 40 H 0.061 0.939 41 H 0.103 0.897 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.840 -13.330 10.572 18.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.155 4.155 3 C -0.167 4.167 4 C -0.053 4.053 5 N -0.180 5.180 6 C -0.482 4.482 7 H 0.104 0.896 8 C -0.191 4.191 9 N -0.499 5.499 10 Si 0.793 3.207 11 H -0.177 1.177 12 H -0.224 1.224 13 H -0.199 1.199 14 C 0.300 3.700 15 O -0.461 6.461 16 C -0.227 4.227 17 C -0.074 4.074 18 C -0.225 4.225 19 C 0.023 3.977 20 C -0.154 4.154 21 N -0.282 5.282 22 C 0.159 3.841 23 O -0.215 6.215 24 C -0.057 4.057 25 H 0.065 0.935 26 H 0.090 0.910 27 H 0.074 0.926 28 H 0.086 0.914 29 H 0.100 0.900 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.118 0.882 34 H 0.067 0.933 35 H 0.203 0.797 36 H 0.206 0.794 37 H 0.114 0.886 38 H 0.092 0.908 39 H 0.129 0.871 40 H 0.079 0.921 41 H 0.121 0.879 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.833 -12.264 10.905 17.417 hybrid contribution 0.157 1.224 -1.299 1.792 sum -5.676 -11.040 9.606 15.696 Atomic orbital electron populations 1.21749 0.94826 1.02367 1.01695 1.21504 0.96667 0.94137 1.03237 1.21964 0.94144 0.98833 1.01808 1.22663 0.95220 0.84424 1.02996 1.43360 1.58205 1.10948 1.05510 1.19320 1.04275 1.26912 0.97684 0.89567 1.26078 0.93289 1.00942 0.98832 1.70008 1.02786 1.34015 1.43085 0.85291 0.79008 0.78461 0.77901 1.17736 1.22369 1.19933 1.18005 0.82313 0.86806 0.82917 1.90547 1.52552 1.17934 1.85113 1.20454 1.02367 1.02142 0.97764 1.22879 0.96735 0.90048 0.97769 1.22207 1.02331 1.04195 0.93801 1.21994 0.88862 0.89497 0.97352 1.20881 1.03994 0.99362 0.91125 1.67254 1.30305 1.10109 1.20500 1.20008 0.88309 0.86512 0.89287 1.86546 1.46645 1.42346 1.45936 1.22994 0.90869 1.01958 0.89843 0.93533 0.91009 0.92583 0.91439 0.89991 0.92382 0.92758 0.92306 0.88246 0.93312 0.79684 0.79417 0.88597 0.90799 0.87139 0.92077 0.87863 0.91747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.71 9.91 71.98 0.71 -2.00 16 2 C -0.12 -2.49 5.86 30.60 0.18 -2.31 16 3 C -0.13 -4.01 4.52 30.60 0.14 -3.87 16 4 C 0.07 2.72 4.85 86.38 0.42 3.14 16 5 N -0.46 -24.41 2.56 -639.27 -1.64 -26.04 16 6 C -0.35 -20.46 9.18 84.09 0.77 -19.69 16 7 H 0.09 4.70 7.91 -2.91 -0.02 4.67 16 8 C 0.01 0.89 4.34 84.95 0.37 1.26 16 9 N -0.86 -55.57 11.65 21.68 0.25 -55.32 16 10 Si 0.97 47.61 29.60 68.60 2.03 49.64 16 11 H -0.25 -11.57 7.11 99.48 0.71 -10.86 16 12 H -0.30 -15.23 7.11 99.48 0.71 -14.53 16 13 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 14 C 0.51 29.05 6.49 86.66 0.56 29.61 16 15 O -0.58 -38.58 13.57 14.13 0.19 -38.39 16 16 C -0.22 -10.28 5.63 -19.91 -0.11 -10.39 16 17 C -0.05 -1.67 7.64 22.73 0.17 -1.50 16 18 C -0.21 -5.13 9.71 22.32 0.22 -4.92 16 19 C 0.16 4.38 6.78 42.58 0.29 4.67 16 20 C -0.10 -1.54 10.16 71.24 0.72 -0.81 16 21 N -0.56 -20.22 9.11 -296.00 -2.70 -22.92 16 22 C 0.34 15.41 7.48 85.15 0.64 16.04 16 23 O -0.31 -15.33 8.99 -68.96 -0.62 -15.95 16 24 C 0.04 1.36 10.38 113.37 1.18 2.54 16 25 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.08 1.39 7.82 -2.39 -0.02 1.37 16 30 H 0.06 1.83 7.28 -2.39 -0.02 1.82 16 31 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.06 2.32 8.12 -2.39 -0.02 2.30 16 33 H 0.10 3.52 3.75 -4.95 -0.02 3.51 16 34 H 0.26 16.08 8.31 -92.71 -0.77 15.31 16 35 H 0.19 5.51 2.53 -2.91 -0.01 5.51 16 36 H 0.19 2.63 8.06 -2.91 -0.02 2.60 16 37 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.11 1.04 8.07 -2.39 -0.02 1.02 16 40 H 0.06 2.00 8.10 -2.39 -0.02 1.98 16 41 H 0.10 3.29 8.14 -2.39 -0.02 3.27 16 42 H 0.06 2.06 8.10 -2.39 -0.02 2.04 16 Total: -1.00 -85.40 342.93 4.79 -80.61 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: 1.01 Total: 16.58 kcal Atomic # 6 Polarization: 5.52 SS G_CDS: 6.26 Total: 11.78 kcal Atomic # 7 Polarization: -100.20 SS G_CDS: -4.08 Total: -104.28 kcal Atomic # 8 Polarization: -53.91 SS G_CDS: -0.43 Total: -54.33 kcal Atomic # 14 Polarization: 47.61 SS G_CDS: 2.03 Total: 49.64 kcal Total: -85.40 4.79 -80.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190805149.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.183 kcal (2) G-P(sol) polarization free energy of solvation -85.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds