Wall clock time and date at job start Tue Mar 31 2020 07:28:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53006 * 109.46921 * 2 1 4 4 C 1.52998 * 109.46561 * 180.02562 * 3 2 1 5 5 N 1.46505 * 109.46879 * 180.02562 * 4 3 2 6 6 C 1.36938 * 119.99784 * 283.53780 * 5 4 3 7 7 H 1.08006 * 119.99981 * 315.06601 * 6 5 4 8 8 C 1.38991 * 120.00126 * 135.06177 * 6 5 4 9 9 N 1.31403 * 120.00169 * 338.75897 * 8 6 5 10 10 Si 1.86806 * 119.99899 * 158.75227 * 8 6 5 11 11 H 1.48491 * 109.47189 * 5.00575 * 10 8 6 12 12 H 1.48501 * 109.46778 * 125.00828 * 10 8 6 13 13 H 1.48503 * 109.47156 * 245.00295 * 10 8 6 14 14 C 1.34773 * 120.00163 * 103.53527 * 5 4 3 15 15 O 1.21641 * 119.99932 * 186.55093 * 14 5 4 16 16 C 1.47354 * 120.00027 * 6.55149 * 14 5 4 17 17 C 1.41631 * 120.26463 * 323.83836 * 16 14 5 18 18 C 1.35963 * 119.00821 * 179.97438 * 17 16 14 19 19 C 1.50705 * 120.24338 * 180.02562 * 18 17 16 20 20 C 1.40776 * 119.51194 * 359.72581 * 18 17 16 21 21 O 1.21955 * 119.74519 * 180.29011 * 20 18 17 22 22 N 1.34544 * 120.51151 * 0.54858 * 20 18 17 23 23 C 1.46500 * 119.47326 * 179.73331 * 22 20 18 24 24 C 1.34604 * 121.04750 * 359.46602 * 22 20 18 25 25 H 1.08999 * 109.46814 * 60.00264 * 1 2 3 26 26 H 1.08998 * 109.46819 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46588 * 300.00244 * 1 2 3 28 28 H 1.08994 * 109.46990 * 239.99641 * 2 1 3 29 29 H 1.08999 * 109.46814 * 119.99736 * 2 1 3 30 30 H 1.08997 * 109.47072 * 60.00046 * 3 2 1 31 31 H 1.09000 * 109.46448 * 299.99731 * 3 2 1 32 32 H 1.08997 * 109.47492 * 60.00178 * 4 3 2 33 33 H 1.09000 * 109.47417 * 299.99011 * 4 3 2 34 34 H 0.96999 * 120.00007 * 185.04268 * 9 8 6 35 35 H 1.07993 * 120.49427 * 359.95841 * 17 16 14 36 36 H 1.09003 * 109.46914 * 95.22297 * 19 18 17 37 37 H 1.09000 * 109.46725 * 215.22328 * 19 18 17 38 38 H 1.08998 * 109.46882 * 335.22548 * 19 18 17 39 39 H 1.09002 * 109.47132 * 269.73053 * 23 22 20 40 40 H 1.09004 * 109.46561 * 149.73503 * 23 22 20 41 41 H 1.08997 * 109.47111 * 29.73705 * 23 22 20 42 42 H 1.07996 * 119.77628 * 180.27327 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0584 2.8237 0.0000 6 6 4.0244 3.5624 -1.1526 7 1 4.3521 3.1251 -2.0842 8 6 3.5681 4.8750 -1.1236 9 7 2.7980 5.2813 -0.1394 10 14 4.0498 6.0615 -2.4836 11 1 4.8148 5.3337 -3.5276 12 1 2.8253 6.6478 -3.0855 13 1 4.8919 7.1465 -1.9188 14 6 4.5411 3.3673 1.1348 15 8 4.8352 4.5472 1.1668 16 6 4.7125 2.5324 2.3368 17 6 3.7816 1.5067 2.6322 18 6 3.9648 0.7513 3.7477 19 6 2.9916 -0.3478 4.0884 20 6 5.0736 0.9993 4.5788 21 8 5.2450 0.3208 5.5776 22 7 5.9431 1.9824 4.2825 23 6 7.0860 2.2245 5.1664 24 6 5.7823 2.7435 3.1840 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3632 0.5139 0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.9330 0.9288 -0.8908 33 1 3.9337 0.9287 0.8892 34 1 2.4200 6.1744 -0.1564 35 1 2.9388 1.3275 1.9812 36 1 3.3669 -1.2969 3.7056 37 1 2.8796 -0.4113 5.1708 38 1 2.0245 -0.1302 3.6351 39 1 6.8076 2.9512 5.9296 40 1 7.9209 2.6125 4.5827 41 1 7.3800 1.2901 5.6444 42 1 6.4952 3.5243 2.9635 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001195110451.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:28 Heat of formation + Delta-G solvation = -19.209547 kcal Electronic energy + Delta-G solvation = -24498.393282 eV Core-core repulsion = 21058.978422 eV Total energy + Delta-G solvation = -3439.414860 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.22969 -38.68000 -36.46841 -35.70344 -34.83758 -33.44360 -31.89264 -30.64628 -28.37739 -27.71391 -26.86581 -25.06088 -23.39056 -22.52198 -22.22261 -20.58919 -19.56956 -17.33989 -17.00569 -16.74033 -16.09952 -15.93525 -15.29801 -14.79369 -14.58954 -14.02152 -13.70703 -13.59083 -13.47665 -13.30941 -12.86929 -12.75389 -12.54963 -12.49391 -12.15310 -11.95685 -11.67109 -11.50744 -11.36976 -11.15499 -10.92594 -10.89355 -10.78518 -10.55534 -10.49485 -10.21332 -10.05538 -9.68180 -9.29656 -8.81876 -8.20731 -7.50559 -7.16459 -6.15966 -3.89228 1.10429 1.96244 2.81094 3.27914 3.37606 3.39444 3.71559 4.24557 4.46945 4.67036 4.90175 5.02078 5.12095 5.22093 5.24333 5.33035 5.33826 5.37073 5.47696 5.51019 5.56964 5.60179 5.78257 5.89403 5.91971 6.06893 6.09547 6.14158 6.21719 6.27778 6.34667 6.39459 6.45665 6.50834 6.60035 6.76045 6.78760 7.08391 7.26700 7.59296 8.21528 8.24290 8.99163 9.09583 9.58795 10.21194 10.91860 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.013782 B = 0.006425 C = 0.004620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2031.160790 B = 4357.090120 C = 6059.044631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.125 4.125 3 C -0.131 4.131 4 C 0.086 3.914 5 N -0.439 5.439 6 C -0.353 4.353 7 H 0.081 0.919 8 C 0.077 3.923 9 N -0.821 5.821 10 Si 0.909 3.091 11 H -0.271 1.271 12 H -0.286 1.286 13 H -0.280 1.280 14 C 0.520 3.480 15 O -0.534 6.534 16 C -0.201 4.201 17 C -0.012 4.012 18 C -0.232 4.232 19 C -0.082 4.082 20 C 0.516 3.484 21 O -0.564 6.564 22 N -0.492 5.492 23 C 0.060 3.940 24 C 0.154 3.846 25 H 0.053 0.947 26 H 0.047 0.953 27 H 0.052 0.948 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.078 0.922 32 H 0.057 0.943 33 H 0.073 0.927 34 H 0.264 0.736 35 H 0.157 0.843 36 H 0.063 0.937 37 H 0.067 0.933 38 H 0.065 0.935 39 H 0.074 0.926 40 H 0.085 0.915 41 H 0.092 0.908 42 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.459 -8.773 4.347 9.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.163 4.163 3 C -0.170 4.170 4 C -0.037 4.037 5 N -0.160 5.160 6 C -0.480 4.480 7 H 0.098 0.902 8 C -0.135 4.135 9 N -0.453 5.453 10 Si 0.736 3.264 11 H -0.196 1.196 12 H -0.213 1.213 13 H -0.206 1.206 14 C 0.307 3.693 15 O -0.413 6.413 16 C -0.209 4.209 17 C -0.033 4.033 18 C -0.236 4.236 19 C -0.140 4.140 20 C 0.319 3.681 21 O -0.448 6.448 22 N -0.202 5.202 23 C -0.081 4.081 24 C 0.024 3.976 25 H 0.072 0.928 26 H 0.066 0.934 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.096 0.904 32 H 0.075 0.925 33 H 0.091 0.909 34 H 0.074 0.926 35 H 0.174 0.826 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.093 0.907 40 H 0.104 0.896 41 H 0.111 0.889 42 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 1.706 -8.405 5.128 9.993 hybrid contribution 0.069 0.786 -0.711 1.062 sum 1.775 -7.619 4.417 8.984 Atomic orbital electron populations 1.21750 0.96256 1.00757 1.01949 1.21557 0.95647 0.97664 1.01479 1.21963 0.96364 0.95099 1.03550 1.22117 0.93651 0.86934 1.01024 1.43066 1.53764 1.10254 1.08891 1.18968 1.46712 0.95053 0.87229 0.90166 1.25251 0.93539 0.98387 0.96297 1.69851 1.25776 1.18648 1.31060 0.86219 0.78304 0.81063 0.80843 1.19574 1.21280 1.20599 1.17361 0.82297 0.87030 0.82566 1.90648 1.52625 1.15073 1.82954 1.20176 0.97904 1.02278 1.00580 1.22240 0.97708 0.89963 0.93410 1.20613 0.99986 1.04845 0.98172 1.20354 0.96118 0.95206 1.02276 1.16961 0.83690 0.80340 0.87130 1.90848 1.75954 1.49243 1.28752 1.44971 1.24515 1.29021 1.21649 1.22143 0.87319 1.04019 0.94664 1.22064 0.97837 0.92961 0.84731 0.92756 0.93380 0.92887 0.92188 0.92509 0.91992 0.90370 0.92500 0.90929 0.92590 0.82613 0.91826 0.91398 0.91648 0.90704 0.89649 0.88899 0.81413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 9.91 37.16 0.37 -1.45 16 2 C -0.13 -1.65 5.91 -26.72 -0.16 -1.81 16 3 C -0.13 -2.27 4.50 -26.73 -0.12 -2.39 16 4 C 0.09 1.61 4.87 -4.04 -0.02 1.59 16 5 N -0.44 -10.42 2.53 -116.05 -0.29 -10.71 16 6 C -0.35 -9.22 9.03 -14.99 -0.14 -9.35 16 7 H 0.08 2.03 7.92 -52.48 -0.42 1.62 16 8 C 0.08 2.08 4.29 -17.46 -0.07 2.01 16 9 N -0.82 -23.35 11.82 55.50 0.66 -22.69 16 10 Si 0.91 21.11 29.61 -169.99 -5.03 16.08 16 11 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 12 H -0.29 -6.50 7.11 56.52 0.40 -6.09 16 13 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 14 C 0.52 12.63 6.82 -12.55 -0.09 12.54 16 15 O -0.53 -15.05 14.42 5.24 0.08 -14.98 16 16 C -0.20 -3.93 5.44 -104.95 -0.57 -4.50 16 17 C -0.01 -0.21 7.03 -39.10 -0.27 -0.48 16 18 C -0.23 -3.85 5.89 -104.48 -0.62 -4.47 16 19 C -0.08 -1.14 9.74 36.01 0.35 -0.78 16 20 C 0.52 9.03 7.39 -15.40 -0.11 8.92 16 21 O -0.56 -10.87 15.77 4.96 0.08 -10.79 16 22 N -0.49 -7.59 2.95 -126.70 -0.37 -7.96 16 23 C 0.06 0.67 10.34 59.85 0.62 1.29 16 24 C 0.15 2.56 9.86 -16.39 -0.16 2.40 16 25 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.06 0.68 8.09 -51.93 -0.42 0.26 16 30 H 0.06 1.16 7.00 -51.93 -0.36 0.80 16 31 H 0.08 1.53 8.07 -51.93 -0.42 1.11 16 32 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.07 1.24 3.98 -51.93 -0.21 1.03 16 34 H 0.26 7.22 8.32 -40.82 -0.34 6.88 16 35 H 0.16 2.63 3.43 -52.49 -0.18 2.45 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.07 0.96 7.76 -51.93 -0.40 0.56 16 38 H 0.06 0.79 8.05 -51.93 -0.42 0.37 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.08 0.72 8.00 -51.93 -0.42 0.30 16 41 H 0.09 1.06 7.36 -51.93 -0.38 0.67 16 42 H 0.17 2.54 7.95 -52.49 -0.42 2.12 16 LS Contribution 342.34 15.07 5.16 5.16 Total: -1.00 -33.29 342.34 -6.86 -40.15 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -6.13 Total: 2.24 kcal Atomic # 6 Polarization: 4.51 SS G_CDS: -0.99 Total: 3.52 kcal Atomic # 7 Polarization: -41.35 SS G_CDS: -0.01 Total: -41.37 kcal Atomic # 8 Polarization: -25.92 SS G_CDS: 0.15 Total: -25.77 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.03 Total: 16.08 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -33.29 -6.86 -40.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195110451.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.938 kcal (2) G-P(sol) polarization free energy of solvation -33.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds