Wall clock time and date at job start Tue Mar 31 2020 07:28:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53006 * 109.46921 * 2 1 4 4 C 1.52998 * 109.46561 * 180.02562 * 3 2 1 5 5 N 1.46505 * 109.46879 * 180.02562 * 4 3 2 6 6 C 1.36938 * 119.99784 * 283.53780 * 5 4 3 7 7 H 1.08006 * 119.99981 * 315.06601 * 6 5 4 8 8 C 1.38991 * 120.00126 * 135.06177 * 6 5 4 9 9 N 1.31403 * 120.00169 * 338.75897 * 8 6 5 10 10 Si 1.86806 * 119.99899 * 158.75227 * 8 6 5 11 11 H 1.48491 * 109.47189 * 5.00575 * 10 8 6 12 12 H 1.48501 * 109.46778 * 125.00828 * 10 8 6 13 13 H 1.48503 * 109.47156 * 245.00295 * 10 8 6 14 14 C 1.34773 * 120.00163 * 103.53527 * 5 4 3 15 15 O 1.21641 * 119.99932 * 186.55093 * 14 5 4 16 16 C 1.47354 * 120.00027 * 6.55149 * 14 5 4 17 17 C 1.41631 * 120.26463 * 323.83836 * 16 14 5 18 18 C 1.35963 * 119.00821 * 179.97438 * 17 16 14 19 19 C 1.50705 * 120.24338 * 180.02562 * 18 17 16 20 20 C 1.40776 * 119.51194 * 359.72581 * 18 17 16 21 21 O 1.21955 * 119.74519 * 180.29011 * 20 18 17 22 22 N 1.34544 * 120.51151 * 0.54858 * 20 18 17 23 23 C 1.46500 * 119.47326 * 179.73331 * 22 20 18 24 24 C 1.34604 * 121.04750 * 359.46602 * 22 20 18 25 25 H 1.08999 * 109.46814 * 60.00264 * 1 2 3 26 26 H 1.08998 * 109.46819 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46588 * 300.00244 * 1 2 3 28 28 H 1.08994 * 109.46990 * 239.99641 * 2 1 3 29 29 H 1.08999 * 109.46814 * 119.99736 * 2 1 3 30 30 H 1.08997 * 109.47072 * 60.00046 * 3 2 1 31 31 H 1.09000 * 109.46448 * 299.99731 * 3 2 1 32 32 H 1.08997 * 109.47492 * 60.00178 * 4 3 2 33 33 H 1.09000 * 109.47417 * 299.99011 * 4 3 2 34 34 H 0.96999 * 120.00007 * 185.04268 * 9 8 6 35 35 H 1.07993 * 120.49427 * 359.95841 * 17 16 14 36 36 H 1.09003 * 109.46914 * 95.22297 * 19 18 17 37 37 H 1.09000 * 109.46725 * 215.22328 * 19 18 17 38 38 H 1.08998 * 109.46882 * 335.22548 * 19 18 17 39 39 H 1.09002 * 109.47132 * 269.73053 * 23 22 20 40 40 H 1.09004 * 109.46561 * 149.73503 * 23 22 20 41 41 H 1.08997 * 109.47111 * 29.73705 * 23 22 20 42 42 H 1.07996 * 119.77628 * 180.27327 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0584 2.8237 0.0000 6 6 4.0244 3.5624 -1.1526 7 1 4.3521 3.1251 -2.0842 8 6 3.5681 4.8750 -1.1236 9 7 2.7980 5.2813 -0.1394 10 14 4.0498 6.0615 -2.4836 11 1 4.8148 5.3337 -3.5276 12 1 2.8253 6.6478 -3.0855 13 1 4.8919 7.1465 -1.9188 14 6 4.5411 3.3673 1.1348 15 8 4.8352 4.5472 1.1668 16 6 4.7125 2.5324 2.3368 17 6 3.7816 1.5067 2.6322 18 6 3.9648 0.7513 3.7477 19 6 2.9916 -0.3478 4.0884 20 6 5.0736 0.9993 4.5788 21 8 5.2450 0.3208 5.5776 22 7 5.9431 1.9824 4.2825 23 6 7.0860 2.2245 5.1664 24 6 5.7823 2.7435 3.1840 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3632 0.5139 0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.9330 0.9288 -0.8908 33 1 3.9337 0.9287 0.8892 34 1 2.4200 6.1744 -0.1564 35 1 2.9388 1.3275 1.9812 36 1 3.3669 -1.2969 3.7056 37 1 2.8796 -0.4113 5.1708 38 1 2.0245 -0.1302 3.6351 39 1 6.8076 2.9512 5.9296 40 1 7.9209 2.6125 4.5827 41 1 7.3800 1.2901 5.6444 42 1 6.4952 3.5243 2.9635 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001195110451.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:27 Heat of formation + Delta-G solvation = -39.028206 kcal Electronic energy + Delta-G solvation = -24499.252684 eV Core-core repulsion = 21058.978422 eV Total energy + Delta-G solvation = -3440.274262 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.58509 -40.37895 -37.88423 -37.28557 -36.17415 -35.04759 -33.66731 -32.05280 -29.79843 -28.87297 -28.10870 -26.87396 -24.81678 -23.79895 -23.66821 -21.84642 -21.25709 -18.94401 -18.42126 -18.14940 -17.73314 -17.22193 -16.91519 -16.48553 -15.99070 -15.66555 -15.23595 -14.98231 -14.70040 -14.54064 -14.27996 -14.19041 -13.68241 -13.59635 -13.50167 -13.27773 -13.04110 -12.91244 -12.81510 -12.74160 -12.66392 -12.51523 -12.16579 -12.01522 -11.95804 -11.68538 -11.38358 -11.05507 -10.79336 -10.65432 -10.08098 -9.12439 -8.86126 -8.17204 -5.93287 -0.21475 0.49772 1.40778 1.48107 1.55413 1.58121 2.24218 2.40568 2.78534 3.10151 3.27480 3.58366 3.76554 3.88857 4.00431 4.11977 4.16282 4.26058 4.34433 4.39121 4.41500 4.51207 4.64505 4.71305 4.73805 4.86277 4.87847 4.94086 5.04006 5.07636 5.11965 5.20145 5.23062 5.33462 5.41085 5.43033 5.49586 5.54146 5.68686 5.92399 6.25418 6.86644 7.05343 7.20092 7.68618 8.33740 8.90721 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.013782 B = 0.006425 C = 0.004620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2031.160790 B = 4357.090120 C = 6059.044631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.117 4.117 3 C -0.119 4.119 4 C 0.085 3.915 5 N -0.454 5.454 6 C -0.365 4.365 7 H 0.083 0.917 8 C 0.030 3.970 9 N -0.859 5.859 10 Si 0.965 3.035 11 H -0.256 1.256 12 H -0.278 1.278 13 H -0.294 1.294 14 C 0.515 3.485 15 O -0.585 6.585 16 C -0.231 4.231 17 C -0.014 4.014 18 C -0.229 4.229 19 C -0.082 4.082 20 C 0.506 3.494 21 O -0.582 6.582 22 N -0.486 5.486 23 C 0.051 3.949 24 C 0.180 3.820 25 H 0.044 0.956 26 H 0.072 0.928 27 H 0.048 0.952 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.042 0.958 31 H 0.046 0.954 32 H 0.066 0.934 33 H 0.094 0.906 34 H 0.259 0.741 35 H 0.160 0.840 36 H 0.080 0.920 37 H 0.062 0.938 38 H 0.083 0.917 39 H 0.088 0.912 40 H 0.117 0.883 41 H 0.093 0.907 42 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.000 -10.594 4.761 11.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.155 4.155 3 C -0.158 4.158 4 C -0.038 4.038 5 N -0.173 5.173 6 C -0.492 4.492 7 H 0.100 0.900 8 C -0.177 4.177 9 N -0.493 5.493 10 Si 0.791 3.209 11 H -0.180 1.180 12 H -0.204 1.204 13 H -0.221 1.221 14 C 0.304 3.696 15 O -0.468 6.468 16 C -0.239 4.239 17 C -0.035 4.035 18 C -0.233 4.233 19 C -0.139 4.139 20 C 0.310 3.690 21 O -0.468 6.468 22 N -0.194 5.194 23 C -0.089 4.089 24 C 0.049 3.951 25 H 0.063 0.937 26 H 0.091 0.909 27 H 0.067 0.933 28 H 0.090 0.910 29 H 0.095 0.905 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.084 0.916 33 H 0.112 0.888 34 H 0.068 0.932 35 H 0.177 0.823 36 H 0.098 0.902 37 H 0.081 0.919 38 H 0.101 0.899 39 H 0.107 0.893 40 H 0.135 0.865 41 H 0.111 0.889 42 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 2.249 -10.276 5.531 11.885 hybrid contribution 0.000 1.289 -0.738 1.485 sum 2.249 -8.988 4.793 10.431 Atomic orbital electron populations 1.21747 0.95375 1.02164 1.01375 1.21512 0.96366 0.94584 1.03033 1.21812 0.95312 0.97623 1.01042 1.22317 0.94476 0.84514 1.02495 1.43307 1.53863 1.11818 1.08329 1.19229 1.46130 0.95644 0.88229 0.89956 1.26007 0.93479 0.99941 0.98314 1.69961 1.27574 1.18573 1.33228 0.85337 0.78069 0.78731 0.78792 1.17980 1.20367 1.22132 1.17959 0.81030 0.86865 0.83754 1.90598 1.54680 1.17343 1.84176 1.19809 1.00424 1.03511 1.00183 1.22112 0.97486 0.89800 0.94136 1.20887 1.00099 1.05036 0.97307 1.20443 0.96370 0.94935 1.02182 1.17210 0.84183 0.80587 0.87022 1.90841 1.76507 1.49968 1.29469 1.45122 1.25064 1.27861 1.21306 1.22502 0.86793 1.04655 0.94900 1.22181 0.96815 0.92220 0.83907 0.93676 0.90911 0.93252 0.91018 0.90481 0.93921 0.93486 0.91554 0.88834 0.93194 0.82320 0.90170 0.91875 0.89865 0.89341 0.86453 0.88867 0.79808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.33 9.91 71.98 0.71 -2.62 16 2 C -0.12 -2.84 5.91 30.60 0.18 -2.66 16 3 C -0.12 -4.12 4.50 30.60 0.14 -3.98 16 4 C 0.08 3.12 4.87 86.38 0.42 3.54 16 5 N -0.45 -21.84 2.53 -639.32 -1.62 -23.46 16 6 C -0.37 -19.43 9.03 84.08 0.76 -18.68 16 7 H 0.08 4.22 7.92 -2.91 -0.02 4.20 16 8 C 0.03 1.67 4.29 84.94 0.36 2.04 16 9 N -0.86 -50.67 11.82 21.67 0.26 -50.41 16 10 Si 0.97 44.25 29.61 68.60 2.03 46.28 16 11 H -0.26 -10.95 7.11 99.48 0.71 -10.25 16 12 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 13 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 14 C 0.51 25.42 6.82 86.64 0.59 26.01 16 15 O -0.59 -33.95 14.42 -4.16 -0.06 -34.01 16 16 C -0.23 -8.91 5.44 -20.08 -0.11 -9.02 16 17 C -0.01 -0.48 7.03 22.58 0.16 -0.32 16 18 C -0.23 -7.15 5.89 -19.77 -0.12 -7.26 16 19 C -0.08 -2.05 9.74 71.24 0.69 -1.35 16 20 C 0.51 16.70 7.39 84.90 0.63 17.33 16 21 O -0.58 -21.28 15.77 -5.17 -0.08 -21.36 16 22 N -0.49 -13.90 2.95 -673.00 -1.99 -15.88 16 23 C 0.05 1.00 10.34 127.77 1.32 2.32 16 24 C 0.18 5.74 9.86 84.23 0.83 6.57 16 25 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.08 1.59 8.09 -2.39 -0.02 1.57 16 30 H 0.04 1.62 7.00 -2.39 -0.02 1.60 16 31 H 0.05 1.89 8.07 -2.39 -0.02 1.87 16 32 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 33 H 0.09 3.07 3.98 -2.39 -0.01 3.06 16 34 H 0.26 14.75 8.32 -92.71 -0.77 13.98 16 35 H 0.16 5.19 3.43 -2.91 -0.01 5.18 16 36 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.06 1.65 7.76 -2.39 -0.02 1.63 16 38 H 0.08 1.76 8.05 -2.39 -0.02 1.74 16 39 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.12 1.55 8.00 -2.38 -0.02 1.53 16 41 H 0.09 1.88 7.36 -2.39 -0.02 1.86 16 42 H 0.18 5.25 7.95 -2.91 -0.02 5.23 16 Total: -1.00 -74.21 342.34 6.13 -68.08 By element: Atomic # 1 Polarization: 17.83 SS G_CDS: 1.02 Total: 18.85 kcal Atomic # 6 Polarization: 5.35 SS G_CDS: 6.57 Total: 11.92 kcal Atomic # 7 Polarization: -86.41 SS G_CDS: -3.35 Total: -89.76 kcal Atomic # 8 Polarization: -55.23 SS G_CDS: -0.14 Total: -55.37 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Total: -74.21 6.13 -68.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195110451.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.051 kcal (2) G-P(sol) polarization free energy of solvation -74.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds