Wall clock time and date at job start Tue Mar 31 2020 07:28:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47416 * 2 1 4 4 C 1.53005 * 109.47558 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.47141 * 180.02562 * 4 3 2 6 6 C 1.36833 * 119.99770 * 269.99494 * 5 4 3 7 7 H 1.08005 * 119.99437 * 19.76813 * 6 5 4 8 8 C 1.39070 * 120.00161 * 199.76486 * 6 5 4 9 9 N 1.31347 * 119.99794 * 15.66081 * 8 6 5 10 10 Si 1.86797 * 120.00258 * 195.66755 * 8 6 5 11 11 H 1.48498 * 109.47405 * 64.99630 * 10 8 6 12 12 H 1.48500 * 109.47386 * 185.00112 * 10 8 6 13 13 H 1.48508 * 109.46566 * 304.99938 * 10 8 6 14 14 C 1.34774 * 120.00314 * 89.99976 * 5 4 3 15 15 O 1.21592 * 120.00062 * 242.72769 * 14 5 4 16 16 C 1.47777 * 120.00091 * 62.72733 * 14 5 4 17 17 N 1.32895 * 119.66588 * 20.95366 * 16 14 5 18 18 C 1.31360 * 121.68361 * 180.02562 * 17 16 14 19 19 C 1.39259 * 120.81514 * 0.02562 * 18 17 16 20 20 O 1.35728 * 120.37944 * 180.02562 * 19 18 17 21 21 C 1.42900 * 116.99455 * 0.02562 * 20 19 18 22 22 C 1.39220 * 119.24786 * 0.02562 * 19 18 17 23 23 C 1.38319 * 118.46039 * 359.97438 * 22 19 18 24 24 C 1.50697 * 120.44032 * 179.97438 * 23 22 19 25 25 H 1.09002 * 109.46493 * 60.00802 * 1 2 3 26 26 H 1.08999 * 109.47126 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47536 * 300.00748 * 1 2 3 28 28 H 1.09003 * 109.47886 * 239.99678 * 2 1 3 29 29 H 1.09004 * 109.46897 * 119.99545 * 2 1 3 30 30 H 1.08999 * 109.47589 * 59.99565 * 3 2 1 31 31 H 1.08998 * 109.47139 * 299.99635 * 3 2 1 32 32 H 1.09001 * 109.46869 * 59.99904 * 4 3 2 33 33 H 1.08998 * 109.46825 * 300.00105 * 4 3 2 34 34 H 0.97001 * 119.99770 * 184.95059 * 9 8 6 35 35 H 1.08006 * 119.59094 * 180.28350 * 18 17 16 36 36 H 1.09005 * 109.47087 * 180.02562 * 21 20 19 37 37 H 1.08998 * 109.47675 * 299.99445 * 21 20 19 38 38 H 1.08996 * 109.47687 * 60.00471 * 21 20 19 39 39 H 1.08002 * 120.77118 * 180.02562 * 22 19 18 40 40 H 1.09003 * 109.46894 * 95.97267 * 24 23 22 41 41 H 1.09004 * 109.47091 * 215.96654 * 24 23 22 42 42 H 1.08997 * 109.47235 * 335.96892 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4425 0.0006 5 7 4.0584 2.8237 0.0013 6 6 4.2870 3.4690 -1.1835 7 1 3.8251 3.1104 -2.0915 8 6 5.1141 4.5865 -1.2183 9 7 5.9119 4.8448 -0.2074 10 14 5.0902 5.7203 -2.7027 11 1 3.7599 6.3719 -2.8066 12 1 6.1398 6.7594 -2.5488 13 1 5.3520 4.9306 -3.9329 14 6 4.2825 3.4587 1.1687 15 8 3.6406 4.4512 1.4539 16 6 5.3085 2.9489 2.1021 17 7 6.2747 2.1570 1.6489 18 6 7.2063 1.6810 2.4434 19 6 7.2134 1.9921 3.8008 20 8 8.1805 1.4958 4.6136 21 6 9.1672 0.6565 4.0102 22 6 6.2174 2.8179 4.3146 23 6 5.2517 3.3020 3.4507 24 6 4.1527 4.1988 3.9593 25 1 -0.3632 0.5137 -0.8901 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8898 28 1 1.8935 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.6767 1.9564 0.8899 31 1 1.6768 1.9563 -0.8900 32 1 3.9338 0.9285 -0.8891 33 1 3.9330 0.9288 0.8908 34 1 6.4355 5.6613 -0.1992 35 1 7.9785 1.0439 2.0381 36 1 9.8782 0.3285 4.7687 37 1 8.6826 -0.2133 3.5669 38 1 9.6936 1.2136 3.2352 39 1 6.1995 3.0753 5.3634 40 1 4.4277 5.2405 3.7933 41 1 3.2277 3.9780 3.4266 42 1 4.0077 4.0269 5.0259 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001199752571.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:17 Heat of formation + Delta-G solvation = -27.611189 kcal Electronic energy + Delta-G solvation = -24210.698519 eV Core-core repulsion = 20770.919336 eV Total energy + Delta-G solvation = -3439.779183 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.26305 -38.64065 -37.23096 -35.45151 -33.83116 -32.81278 -31.52446 -30.45948 -28.20941 -27.64049 -26.47102 -24.92255 -23.64426 -22.60257 -21.28189 -20.60115 -19.63285 -17.60193 -17.25179 -16.61661 -15.77846 -15.66600 -15.00225 -14.95220 -14.25417 -13.94708 -13.75452 -13.70611 -13.43403 -13.22499 -12.84709 -12.43505 -12.25906 -12.16427 -12.10220 -11.79350 -11.74294 -11.42894 -11.29776 -11.08977 -10.94054 -10.76049 -10.74078 -10.60290 -10.40948 -10.13136 -9.95509 -8.95219 -8.90058 -8.87767 -8.32496 -7.84089 -7.23796 -6.07128 -3.47240 1.48215 1.80373 3.32286 3.36670 3.40407 3.41895 3.71795 4.35104 4.58212 4.86892 4.98577 5.03363 5.18375 5.22819 5.28630 5.33550 5.42077 5.46674 5.50320 5.56030 5.61927 5.82325 5.86335 5.87699 6.10551 6.17264 6.23296 6.26231 6.28549 6.28941 6.42841 6.46655 6.54980 6.67907 6.80088 6.84042 6.98370 7.09105 7.50551 7.62342 8.18167 8.62605 9.07703 9.34271 9.62704 10.09954 11.05092 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.010722 B = 0.006527 C = 0.004961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2610.804976 B = 4288.554361 C = 5642.850177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.121 4.121 3 C -0.137 4.137 4 C 0.138 3.862 5 N -0.527 5.527 6 C -0.281 4.281 7 H 0.083 0.917 8 C 0.026 3.974 9 N -0.873 5.873 10 Si 0.917 3.083 11 H -0.279 1.279 12 H -0.289 1.289 13 H -0.278 1.278 14 C 0.632 3.368 15 O -0.520 6.520 16 C 0.089 3.911 17 N -0.382 5.382 18 C 0.006 3.994 19 C 0.069 3.931 20 O -0.318 6.318 21 C 0.027 3.973 22 C -0.127 4.127 23 C -0.067 4.067 24 C -0.100 4.100 25 H 0.052 0.948 26 H 0.047 0.953 27 H 0.051 0.949 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.044 0.956 34 H 0.266 0.734 35 H 0.150 0.850 36 H 0.097 0.903 37 H 0.056 0.944 38 H 0.056 0.944 39 H 0.135 0.865 40 H 0.078 0.922 41 H 0.084 0.916 42 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.433 -9.340 7.250 11.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.159 4.159 3 C -0.176 4.176 4 C 0.013 3.987 5 N -0.254 5.254 6 C -0.408 4.408 7 H 0.101 0.899 8 C -0.177 4.177 9 N -0.514 5.514 10 Si 0.745 3.255 11 H -0.205 1.205 12 H -0.214 1.214 13 H -0.204 1.204 14 C 0.422 3.578 15 O -0.394 6.394 16 C -0.052 4.052 17 N -0.093 5.093 18 C -0.156 4.156 19 C 0.022 3.978 20 O -0.230 6.230 21 C -0.069 4.069 22 C -0.153 4.153 23 C -0.071 4.071 24 C -0.157 4.157 25 H 0.071 0.929 26 H 0.066 0.934 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.063 0.937 34 H 0.077 0.923 35 H 0.167 0.833 36 H 0.115 0.885 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.153 0.847 40 H 0.097 0.903 41 H 0.103 0.897 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.306 -8.855 6.726 11.123 hybrid contribution 0.667 0.737 -0.083 0.998 sum 0.973 -8.117 6.642 10.534 Atomic orbital electron populations 1.21757 0.96439 1.00743 1.01741 1.21469 0.95310 0.97658 1.01467 1.22123 0.97883 0.95230 1.02347 1.21027 0.91892 0.85261 1.00544 1.42276 1.68977 1.10198 1.03902 1.19137 1.24262 1.11619 0.85772 0.89923 1.25053 0.94267 0.99982 0.98411 1.69371 1.24809 1.24355 1.32855 0.86159 0.77607 0.80304 0.81479 1.20480 1.21424 1.20379 1.16790 0.79892 0.81555 0.79597 1.90501 1.46982 1.28240 1.73709 1.21818 0.96447 0.95570 0.91353 1.67643 0.99913 1.05656 1.36080 1.22928 1.00498 1.03373 0.88759 1.20229 0.90358 0.96156 0.91089 1.85960 1.37116 1.63388 1.36529 1.23033 0.90474 0.93540 0.99815 1.20581 0.94286 0.99861 1.00553 1.20858 0.96243 0.96533 0.93440 1.20787 0.97079 0.98824 0.98988 0.92864 0.93393 0.92986 0.92221 0.92559 0.92664 0.91650 0.92150 0.93734 0.92300 0.83283 0.88496 0.92580 0.92509 0.84696 0.90303 0.89717 0.92974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.91 37.16 0.37 -1.48 16 2 C -0.12 -1.70 5.93 -26.73 -0.16 -1.86 16 3 C -0.14 -2.46 5.54 -26.73 -0.15 -2.61 16 4 C 0.14 2.87 5.55 -4.04 -0.02 2.85 16 5 N -0.53 -13.50 2.39 -115.91 -0.28 -13.77 16 6 C -0.28 -7.70 9.61 -15.01 -0.14 -7.85 16 7 H 0.08 2.16 7.88 -52.48 -0.41 1.74 16 8 C 0.03 0.72 5.13 -17.45 -0.09 0.63 16 9 N -0.87 -25.63 11.13 55.50 0.62 -25.02 16 10 Si 0.92 22.03 29.58 -169.99 -5.03 17.00 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 12 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 13 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 14 C 0.63 16.54 3.68 -12.36 -0.05 16.50 16 15 O -0.52 -14.58 14.36 5.28 0.08 -14.50 16 16 C 0.09 2.10 5.92 -83.03 -0.49 1.61 16 17 N -0.38 -8.73 10.12 -9.68 -0.10 -8.83 16 18 C 0.01 0.10 10.21 -17.37 -0.18 -0.07 16 19 C 0.07 1.19 6.72 -38.84 -0.26 0.93 16 20 O -0.32 -4.65 10.50 -18.89 -0.20 -4.85 16 21 C 0.03 0.27 9.82 101.05 0.99 1.27 16 22 C -0.13 -2.23 9.77 -39.19 -0.38 -2.61 16 23 C -0.07 -1.37 5.92 -104.11 -0.62 -1.99 16 24 C -0.10 -1.83 8.61 36.00 0.31 -1.52 16 25 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.06 1.22 8.04 -51.93 -0.42 0.80 16 33 H 0.04 0.90 7.65 -51.93 -0.40 0.50 16 34 H 0.27 7.66 8.31 -40.82 -0.34 7.32 16 35 H 0.15 2.31 6.31 -52.48 -0.33 1.98 16 36 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.06 0.52 7.67 -51.93 -0.40 0.12 16 38 H 0.06 0.57 7.67 -51.93 -0.40 0.17 16 39 H 0.14 1.98 8.06 -52.49 -0.42 1.56 16 40 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 41 H 0.08 1.68 6.30 -51.93 -0.33 1.35 16 42 H 0.05 0.75 8.06 -51.93 -0.42 0.33 16 LS Contribution 350.95 15.07 5.29 5.29 Total: -1.00 -32.90 350.95 -6.95 -39.85 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -6.46 Total: 1.03 kcal Atomic # 6 Polarization: 4.67 SS G_CDS: -0.87 Total: 3.80 kcal Atomic # 7 Polarization: -47.86 SS G_CDS: 0.24 Total: -47.62 kcal Atomic # 8 Polarization: -19.23 SS G_CDS: -0.12 Total: -19.35 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.03 Total: 17.00 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.90 -6.95 -39.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199752571.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.242 kcal (2) G-P(sol) polarization free energy of solvation -32.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds