Wall clock time and date at job start Tue Mar 31 2020 07:28:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47416 * 2 1 4 4 C 1.53005 * 109.47558 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.47141 * 180.02562 * 4 3 2 6 6 C 1.36833 * 119.99770 * 269.99494 * 5 4 3 7 7 H 1.08005 * 119.99437 * 19.76813 * 6 5 4 8 8 C 1.39070 * 120.00161 * 199.76486 * 6 5 4 9 9 N 1.31347 * 119.99794 * 15.66081 * 8 6 5 10 10 Si 1.86797 * 120.00258 * 195.66755 * 8 6 5 11 11 H 1.48498 * 109.47405 * 64.99630 * 10 8 6 12 12 H 1.48500 * 109.47386 * 185.00112 * 10 8 6 13 13 H 1.48508 * 109.46566 * 304.99938 * 10 8 6 14 14 C 1.34774 * 120.00314 * 89.99976 * 5 4 3 15 15 O 1.21592 * 120.00062 * 242.72769 * 14 5 4 16 16 C 1.47777 * 120.00091 * 62.72733 * 14 5 4 17 17 N 1.32895 * 119.66588 * 20.95366 * 16 14 5 18 18 C 1.31360 * 121.68361 * 180.02562 * 17 16 14 19 19 C 1.39259 * 120.81514 * 0.02562 * 18 17 16 20 20 O 1.35728 * 120.37944 * 180.02562 * 19 18 17 21 21 C 1.42900 * 116.99455 * 0.02562 * 20 19 18 22 22 C 1.39220 * 119.24786 * 0.02562 * 19 18 17 23 23 C 1.38319 * 118.46039 * 359.97438 * 22 19 18 24 24 C 1.50697 * 120.44032 * 179.97438 * 23 22 19 25 25 H 1.09002 * 109.46493 * 60.00802 * 1 2 3 26 26 H 1.08999 * 109.47126 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47536 * 300.00748 * 1 2 3 28 28 H 1.09003 * 109.47886 * 239.99678 * 2 1 3 29 29 H 1.09004 * 109.46897 * 119.99545 * 2 1 3 30 30 H 1.08999 * 109.47589 * 59.99565 * 3 2 1 31 31 H 1.08998 * 109.47139 * 299.99635 * 3 2 1 32 32 H 1.09001 * 109.46869 * 59.99904 * 4 3 2 33 33 H 1.08998 * 109.46825 * 300.00105 * 4 3 2 34 34 H 0.97001 * 119.99770 * 184.95059 * 9 8 6 35 35 H 1.08006 * 119.59094 * 180.28350 * 18 17 16 36 36 H 1.09005 * 109.47087 * 180.02562 * 21 20 19 37 37 H 1.08998 * 109.47675 * 299.99445 * 21 20 19 38 38 H 1.08996 * 109.47687 * 60.00471 * 21 20 19 39 39 H 1.08002 * 120.77118 * 180.02562 * 22 19 18 40 40 H 1.09003 * 109.46894 * 95.97267 * 24 23 22 41 41 H 1.09004 * 109.47091 * 215.96654 * 24 23 22 42 42 H 1.08997 * 109.47235 * 335.96892 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4425 0.0006 5 7 4.0584 2.8237 0.0013 6 6 4.2870 3.4690 -1.1835 7 1 3.8251 3.1104 -2.0915 8 6 5.1141 4.5865 -1.2183 9 7 5.9119 4.8448 -0.2074 10 14 5.0902 5.7203 -2.7027 11 1 3.7599 6.3719 -2.8066 12 1 6.1398 6.7594 -2.5488 13 1 5.3520 4.9306 -3.9329 14 6 4.2825 3.4587 1.1687 15 8 3.6406 4.4512 1.4539 16 6 5.3085 2.9489 2.1021 17 7 6.2747 2.1570 1.6489 18 6 7.2063 1.6810 2.4434 19 6 7.2134 1.9921 3.8008 20 8 8.1805 1.4958 4.6136 21 6 9.1672 0.6565 4.0102 22 6 6.2174 2.8179 4.3146 23 6 5.2517 3.3020 3.4507 24 6 4.1527 4.1988 3.9593 25 1 -0.3632 0.5137 -0.8901 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8898 28 1 1.8935 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.6767 1.9564 0.8899 31 1 1.6768 1.9563 -0.8900 32 1 3.9338 0.9285 -0.8891 33 1 3.9330 0.9288 0.8908 34 1 6.4355 5.6613 -0.1992 35 1 7.9785 1.0439 2.0381 36 1 9.8782 0.3285 4.7687 37 1 8.6826 -0.2133 3.5669 38 1 9.6936 1.2136 3.2352 39 1 6.1995 3.0753 5.3634 40 1 4.4277 5.2405 3.7933 41 1 3.2277 3.9780 3.4266 42 1 4.0077 4.0269 5.0259 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001199752571.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:17 Heat of formation + Delta-G solvation = -48.301405 kcal Electronic energy + Delta-G solvation = -24211.595714 eV Core-core repulsion = 20770.919336 eV Total energy + Delta-G solvation = -3440.676378 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.74893 -40.27268 -38.72875 -37.12688 -35.44196 -34.40076 -33.40791 -31.89126 -29.68120 -28.98707 -27.67948 -26.81003 -25.21722 -24.11564 -22.72990 -21.94971 -21.43703 -19.29798 -18.63431 -18.06123 -17.55700 -16.98345 -16.78431 -16.40082 -15.87921 -15.69140 -15.25695 -15.12561 -14.92488 -14.56402 -14.16870 -13.86630 -13.72909 -13.59015 -13.54248 -13.44909 -13.16334 -12.91755 -12.82220 -12.70506 -12.46092 -12.28996 -12.26865 -12.17689 -12.00981 -11.80688 -11.40807 -10.88055 -10.63923 -10.36775 -10.10620 -9.32811 -9.19536 -8.15156 -5.58924 -0.07064 0.33617 1.39151 1.46038 1.51275 1.92779 2.21942 2.41652 2.92581 3.14400 3.27102 3.64116 3.67808 4.00673 4.03066 4.08296 4.20974 4.28371 4.32672 4.40557 4.41323 4.48714 4.52014 4.74492 4.75233 4.79681 4.82264 4.88341 4.92908 4.99788 5.02677 5.13537 5.18568 5.32058 5.37077 5.42894 5.48542 5.53402 5.59252 6.11119 6.24326 7.01030 7.03635 7.40201 7.68813 8.09260 8.94814 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.010722 B = 0.006527 C = 0.004961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2610.804976 B = 4288.554361 C = 5642.850177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.113 4.113 3 C -0.125 4.125 4 C 0.139 3.861 5 N -0.548 5.548 6 C -0.293 4.293 7 H 0.088 0.912 8 C -0.029 4.029 9 N -0.903 5.903 10 Si 0.979 3.021 11 H -0.282 1.282 12 H -0.292 1.292 13 H -0.261 1.261 14 C 0.631 3.369 15 O -0.557 6.557 16 C 0.049 3.951 17 N -0.414 5.414 18 C -0.002 4.002 19 C 0.092 3.908 20 O -0.316 6.316 21 C 0.013 3.987 22 C -0.125 4.125 23 C -0.075 4.075 24 C -0.093 4.093 25 H 0.051 0.949 26 H 0.071 0.929 27 H 0.048 0.952 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.037 0.963 31 H 0.050 0.950 32 H 0.063 0.937 33 H 0.047 0.953 34 H 0.256 0.744 35 H 0.178 0.822 36 H 0.131 0.869 37 H 0.069 0.931 38 H 0.059 0.941 39 H 0.171 0.829 40 H 0.063 0.937 41 H 0.061 0.939 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.298 -11.178 8.413 14.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.151 4.151 3 C -0.165 4.165 4 C 0.015 3.985 5 N -0.275 5.275 6 C -0.421 4.421 7 H 0.105 0.895 8 C -0.228 4.228 9 N -0.546 5.546 10 Si 0.805 3.195 11 H -0.208 1.208 12 H -0.218 1.218 13 H -0.185 1.185 14 C 0.424 3.576 15 O -0.434 6.434 16 C -0.091 4.091 17 N -0.125 5.125 18 C -0.164 4.164 19 C 0.043 3.957 20 O -0.228 6.228 21 C -0.081 4.081 22 C -0.151 4.151 23 C -0.078 4.078 24 C -0.150 4.150 25 H 0.070 0.930 26 H 0.090 0.910 27 H 0.067 0.933 28 H 0.089 0.911 29 H 0.084 0.916 30 H 0.056 0.944 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.195 0.805 36 H 0.149 0.851 37 H 0.087 0.913 38 H 0.078 0.922 39 H 0.188 0.812 40 H 0.081 0.919 41 H 0.079 0.921 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 1.163 -10.736 7.882 13.370 hybrid contribution 0.525 1.151 -0.305 1.301 sum 1.688 -9.586 7.577 12.335 Atomic orbital electron populations 1.21736 0.94845 1.02268 1.01576 1.21424 0.96642 0.94622 1.02458 1.21998 0.95860 0.97889 1.00731 1.21171 0.93379 0.83242 1.00699 1.42498 1.69707 1.11860 1.03442 1.19463 1.23830 1.12017 0.86763 0.89452 1.25909 0.94319 1.01433 1.01148 1.69564 1.25938 1.24331 1.34734 0.85183 0.76985 0.78305 0.79038 1.20800 1.21813 1.18535 1.17326 0.79434 0.80823 0.80053 1.90450 1.48419 1.29625 1.74942 1.21445 0.96920 0.98406 0.92296 1.67492 1.00800 1.06360 1.37834 1.23376 1.00176 1.03387 0.89477 1.20242 0.90240 0.94527 0.90676 1.85991 1.36893 1.63508 1.36413 1.23453 0.90043 0.93268 1.01296 1.20891 0.93323 0.99115 1.01745 1.21050 0.97406 0.96631 0.92692 1.20713 0.95450 0.97498 1.01291 0.93023 0.90978 0.93258 0.91115 0.91647 0.94410 0.93076 0.91852 0.93456 0.93376 0.80512 0.85126 0.91278 0.92186 0.81202 0.91856 0.92055 0.88591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.39 9.91 71.98 0.71 -2.68 16 2 C -0.11 -3.07 5.93 30.59 0.18 -2.89 16 3 C -0.13 -4.62 5.54 30.59 0.17 -4.45 16 4 C 0.14 5.94 5.55 86.38 0.48 6.42 16 5 N -0.55 -29.13 2.39 -638.89 -1.52 -30.66 16 6 C -0.29 -16.61 9.61 84.11 0.81 -15.80 16 7 H 0.09 4.68 7.88 -2.91 -0.02 4.66 16 8 C -0.03 -1.70 5.13 84.97 0.44 -1.26 16 9 N -0.90 -55.05 11.13 21.68 0.24 -54.80 16 10 Si 0.98 46.50 29.58 68.60 2.03 48.53 16 11 H -0.28 -13.36 7.11 99.48 0.71 -12.66 16 12 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 13 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 14 C 0.63 34.53 3.68 86.77 0.32 34.85 16 15 O -0.56 -32.99 14.36 -4.01 -0.06 -33.05 16 16 C 0.05 2.35 5.92 41.82 0.25 2.60 16 17 N -0.41 -19.09 10.12 -184.55 -1.87 -20.95 16 18 C 0.00 -0.08 10.21 85.01 0.87 0.79 16 19 C 0.09 2.93 6.72 22.75 0.15 3.09 16 20 O -0.32 -8.08 10.50 -90.51 -0.95 -9.03 16 21 C 0.01 0.22 9.82 113.37 1.11 1.34 16 22 C -0.12 -4.12 9.77 22.53 0.22 -3.90 16 23 C -0.07 -3.02 5.92 -19.54 -0.12 -3.14 16 24 C -0.09 -3.41 8.61 71.23 0.61 -2.80 16 25 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16 30 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.06 2.61 8.04 -2.39 -0.02 2.59 16 33 H 0.05 1.96 7.65 -2.39 -0.02 1.94 16 34 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 35 H 0.18 5.10 6.31 -2.91 -0.02 5.09 16 36 H 0.13 1.35 8.14 -2.38 -0.02 1.33 16 37 H 0.07 1.01 7.67 -2.39 -0.02 1.00 16 38 H 0.06 1.00 7.67 -2.39 -0.02 0.98 16 39 H 0.17 4.33 8.06 -2.91 -0.02 4.31 16 40 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 41 H 0.06 2.54 6.30 -2.38 -0.02 2.52 16 42 H 0.10 2.59 8.06 -2.39 -0.02 2.57 16 Total: -1.00 -74.96 350.95 5.08 -69.88 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: 1.00 Total: 17.92 kcal Atomic # 6 Polarization: 5.96 SS G_CDS: 6.21 Total: 12.16 kcal Atomic # 7 Polarization: -103.26 SS G_CDS: -3.15 Total: -106.41 kcal Atomic # 8 Polarization: -41.07 SS G_CDS: -1.01 Total: -42.07 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 2.03 Total: 48.53 kcal Total: -74.96 5.08 -69.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199752571.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.581 kcal (2) G-P(sol) polarization free energy of solvation -74.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds