Wall clock time and date at job start Tue Mar 31 2020 07:28:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47092 * 2 1 4 4 C 1.53002 * 109.47092 * 179.97438 * 3 2 1 5 5 N 1.46495 * 109.46774 * 179.97438 * 4 3 2 6 6 C 1.37163 * 120.00304 * 269.99621 * 5 4 3 7 7 H 1.07998 * 120.00252 * 156.13399 * 6 5 4 8 8 C 1.38883 * 119.99782 * 336.13955 * 6 5 4 9 9 N 1.31472 * 120.00161 * 332.28906 * 8 6 5 10 10 Si 1.86800 * 120.00107 * 152.29228 * 8 6 5 11 11 H 1.48499 * 109.47275 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47178 * 119.99768 * 10 8 6 13 13 H 1.48503 * 109.47191 * 239.99855 * 10 8 6 14 14 C 1.34773 * 120.00112 * 89.99975 * 5 4 3 15 15 O 1.21597 * 119.99940 * 7.94648 * 14 5 4 16 16 N 1.34775 * 120.00165 * 187.94523 * 14 5 4 17 17 C 1.40109 * 120.00077 * 186.01736 * 16 14 5 18 18 C 1.38850 * 120.01675 * 324.33720 * 17 16 14 19 19 C 1.38091 * 119.98218 * 180.25068 * 18 17 16 20 20 C 1.38716 * 120.01563 * 359.49110 * 19 18 17 21 21 O 1.35984 * 119.98294 * 180.25205 * 20 19 18 22 22 C 1.42900 * 116.99789 * 180.02562 * 21 20 19 23 23 C 1.38719 * 120.03561 * 0.23182 * 20 19 18 24 24 C 1.38097 * 120.01137 * 0.02562 * 23 20 19 25 25 H 1.09002 * 109.47030 * 60.00655 * 1 2 3 26 26 H 1.09004 * 109.47054 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47356 * 300.00369 * 1 2 3 28 28 H 1.08999 * 109.47356 * 239.99631 * 2 1 3 29 29 H 1.09002 * 109.47030 * 119.99345 * 2 1 3 30 30 H 1.08999 * 109.47321 * 59.99610 * 3 2 1 31 31 H 1.09002 * 109.46648 * 299.99578 * 3 2 1 32 32 H 1.08999 * 109.47356 * 59.99631 * 4 3 2 33 33 H 1.09003 * 109.46653 * 299.99731 * 4 3 2 34 34 H 0.97000 * 120.00650 * 185.02084 * 9 8 6 35 35 H 0.97006 * 120.00351 * 6.01783 * 16 14 5 36 36 H 1.07996 * 120.00727 * 359.97438 * 18 17 16 37 37 H 1.08002 * 119.99128 * 179.76879 * 19 18 17 38 38 H 1.08997 * 109.47056 * 180.02562 * 22 21 20 39 39 H 1.09004 * 109.46840 * 300.00192 * 22 21 20 40 40 H 1.09003 * 109.47573 * 59.99970 * 22 21 20 41 41 H 1.07996 * 119.99873 * 180.02562 * 23 20 19 42 42 H 1.07995 * 120.00350 * 180.02562 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8237 0.0000 6 6 4.2874 3.4696 -1.1881 7 1 4.2675 4.5487 -1.2288 8 6 4.5450 2.7360 -2.3389 9 7 5.0986 1.5468 -2.2503 10 14 4.1048 3.4389 -4.0127 11 1 3.4974 4.7831 -3.8410 12 1 5.3325 3.5521 -4.8404 13 1 3.1341 2.5401 -4.6874 14 6 4.2824 3.4598 1.1669 15 8 4.2195 2.8469 2.2152 16 7 4.5762 4.7751 1.1719 17 6 4.9326 5.4088 2.3695 18 6 4.3329 5.0274 3.5624 19 6 4.6809 5.6560 4.7416 20 6 5.6370 6.6610 4.7363 21 8 5.9829 7.2761 5.8987 22 6 6.9738 8.3027 5.8196 23 6 6.2407 7.0387 3.5459 24 6 5.8898 6.4146 2.3650 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5137 0.8901 30 1 1.6766 1.9564 0.8899 31 1 1.6767 1.9563 -0.8901 32 1 3.9338 0.9285 -0.8891 33 1 3.9329 0.9288 0.8909 34 1 5.3452 1.0654 -3.0554 35 1 4.5409 5.2831 0.3462 36 1 3.5913 4.2423 3.5672 37 1 4.2118 5.3619 5.6690 38 1 7.1564 8.7089 6.8144 39 1 7.8990 7.8847 5.4227 40 1 6.6222 9.0971 5.1612 41 1 6.9853 7.8210 3.5425 42 1 6.3602 6.7085 1.4384 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001202391509.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:45 Heat of formation + Delta-G solvation = -35.114398 kcal Electronic energy + Delta-G solvation = -23333.108053 eV Core-core repulsion = 19893.003506 eV Total energy + Delta-G solvation = -3440.104546 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.06325 -39.11714 -37.19192 -35.46254 -33.98768 -33.35679 -31.56162 -30.73602 -29.00296 -27.97438 -26.77747 -24.99119 -23.09049 -22.43775 -21.41465 -20.36476 -19.49683 -17.97969 -17.86919 -17.19296 -15.85895 -15.66076 -15.57809 -14.77229 -14.67771 -14.42067 -14.04506 -13.95884 -13.46254 -13.27521 -13.21297 -12.78346 -12.40513 -12.39753 -12.18793 -11.96033 -11.79955 -11.47746 -11.31126 -11.20195 -10.89214 -10.62425 -10.57733 -10.47109 -10.34965 -10.24582 -9.72396 -9.30083 -9.15521 -8.83764 -8.54603 -7.64880 -7.13962 -6.39837 -3.99197 1.69812 1.80661 3.05884 3.18341 3.20783 3.45159 3.77183 3.98984 4.14288 4.39141 4.95155 4.99711 5.14009 5.15406 5.20686 5.29328 5.42225 5.51138 5.63140 5.69173 5.71838 5.78867 6.04954 6.11384 6.26885 6.34354 6.36702 6.39682 6.43876 6.59690 6.60557 6.76699 6.86700 6.88238 7.00898 7.12563 7.29782 7.49167 7.53213 7.74916 7.85515 8.14995 8.38701 9.04546 9.63280 9.98196 10.58188 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.016784 B = 0.004124 C = 0.003461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.871389 B = 6787.559299 C = 8087.221745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C -0.126 4.126 4 C 0.113 3.887 5 N -0.457 5.457 6 C -0.342 4.342 7 H 0.088 0.912 8 C 0.043 3.957 9 N -0.854 5.854 10 Si 0.912 3.088 11 H -0.269 1.269 12 H -0.282 1.282 13 H -0.278 1.278 14 C 0.665 3.335 15 O -0.627 6.627 16 N -0.686 5.686 17 C 0.158 3.842 18 C -0.086 4.086 19 C -0.132 4.132 20 C 0.087 3.913 21 O -0.323 6.323 22 C 0.030 3.970 23 C -0.188 4.188 24 C -0.123 4.123 25 H 0.050 0.950 26 H 0.047 0.953 27 H 0.049 0.951 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.047 0.953 31 H 0.057 0.943 32 H 0.127 0.873 33 H 0.053 0.947 34 H 0.270 0.730 35 H 0.407 0.593 36 H 0.149 0.851 37 H 0.127 0.873 38 H 0.093 0.907 39 H 0.052 0.948 40 H 0.051 0.949 41 H 0.124 0.876 42 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.932 7.707 6.113 9.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.157 4.157 3 C -0.165 4.165 4 C -0.011 4.011 5 N -0.178 5.178 6 C -0.469 4.469 7 H 0.105 0.895 8 C -0.163 4.163 9 N -0.491 5.491 10 Si 0.739 3.261 11 H -0.193 1.193 12 H -0.208 1.208 13 H -0.204 1.204 14 C 0.369 3.631 15 O -0.511 6.511 16 N -0.334 5.334 17 C 0.061 3.939 18 C -0.107 4.107 19 C -0.151 4.151 20 C 0.042 3.958 21 O -0.237 6.237 22 C -0.065 4.065 23 C -0.207 4.207 24 C -0.145 4.145 25 H 0.069 0.931 26 H 0.066 0.934 27 H 0.069 0.931 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.066 0.934 31 H 0.076 0.924 32 H 0.144 0.856 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.244 0.756 36 H 0.167 0.833 37 H 0.145 0.855 38 H 0.112 0.888 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.142 0.858 42 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -1.052 6.959 6.777 9.771 hybrid contribution 0.136 0.768 -1.573 1.756 sum -0.916 7.727 5.205 9.361 Atomic orbital electron populations 1.21759 0.96715 1.00649 1.01422 1.21418 0.94880 0.97769 1.01646 1.21899 0.98164 0.95374 1.01035 1.21734 0.91091 0.83301 1.05013 1.42767 1.59578 1.12793 1.02665 1.19247 1.50742 0.91882 0.85022 0.89478 1.25100 0.95535 0.95956 0.99690 1.69776 1.35490 1.14313 1.29548 0.86116 0.78579 0.79323 0.82111 1.19301 1.20844 1.20413 1.16053 0.80804 0.81044 0.85216 1.90725 1.62810 1.66133 1.31405 1.42723 1.72574 1.09212 1.08843 1.17587 0.94974 0.94440 0.86920 1.21295 0.99822 0.99227 0.90372 1.20309 0.99161 0.96785 0.98890 1.18911 0.97158 0.95086 0.84653 1.86042 1.57229 1.50566 1.29904 1.22948 0.90735 0.89663 1.03193 1.20868 1.03906 1.03912 0.92004 1.20695 0.96866 0.98798 0.98118 0.93077 0.93436 0.93137 0.92160 0.92420 0.93414 0.92381 0.85593 0.92875 0.91912 0.75590 0.83317 0.85546 0.88829 0.92971 0.93010 0.85841 0.85776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.91 37.16 0.37 -1.75 16 2 C -0.12 -2.02 5.93 -26.73 -0.16 -2.18 16 3 C -0.13 -2.57 5.54 -26.73 -0.15 -2.71 16 4 C 0.11 2.67 5.07 -4.04 -0.02 2.65 16 5 N -0.46 -11.34 2.60 -120.18 -0.31 -11.65 16 6 C -0.34 -8.37 9.12 -14.93 -0.14 -8.51 16 7 H 0.09 1.99 6.24 -52.49 -0.33 1.66 16 8 C 0.04 1.04 4.95 -17.47 -0.09 0.95 16 9 N -0.85 -21.84 10.95 55.49 0.61 -21.23 16 10 Si 0.91 18.82 29.64 -169.99 -5.04 13.78 16 11 H -0.27 -5.42 7.11 56.52 0.40 -5.01 16 12 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 13 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 14 C 0.67 16.28 8.06 -86.92 -0.70 15.58 16 15 O -0.63 -16.48 13.33 5.28 0.07 -16.41 16 16 N -0.69 -14.29 5.20 -14.19 -0.07 -14.36 16 17 C 0.16 3.02 6.30 -83.62 -0.53 2.49 16 18 C -0.09 -1.64 8.70 -39.41 -0.34 -1.98 16 19 C -0.13 -2.20 9.98 -39.46 -0.39 -2.59 16 20 C 0.09 1.35 6.69 -39.23 -0.26 1.09 16 21 O -0.32 -4.49 10.50 -19.69 -0.21 -4.70 16 22 C 0.03 0.28 9.81 101.05 0.99 1.27 16 23 C -0.19 -2.73 9.03 -39.46 -0.36 -3.09 16 24 C -0.12 -1.99 9.96 -39.41 -0.39 -2.39 16 25 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.13 3.18 4.85 -51.93 -0.25 2.93 16 33 H 0.05 1.32 7.33 -51.93 -0.38 0.94 16 34 H 0.27 6.50 8.32 -40.82 -0.34 6.16 16 35 H 0.41 7.81 6.64 -40.82 -0.27 7.54 16 36 H 0.15 3.09 6.22 -52.49 -0.33 2.76 16 37 H 0.13 1.87 8.06 -52.49 -0.42 1.45 16 38 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.05 0.45 7.66 -51.93 -0.40 0.06 16 40 H 0.05 0.43 7.66 -51.93 -0.40 0.03 16 41 H 0.12 1.43 6.29 -52.49 -0.33 1.10 16 42 H 0.12 1.77 8.06 -52.49 -0.42 1.35 16 LS Contribution 345.04 15.07 5.20 5.20 Total: -1.00 -28.98 345.04 -7.96 -36.94 By element: Atomic # 1 Polarization: 19.63 SS G_CDS: -6.05 Total: 13.58 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: -2.17 Total: -1.17 kcal Atomic # 7 Polarization: -47.46 SS G_CDS: 0.22 Total: -47.24 kcal Atomic # 8 Polarization: -20.97 SS G_CDS: -0.14 Total: -21.10 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -5.04 Total: 13.78 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -28.98 -7.96 -36.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202391509.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.830 kcal (2) G-P(sol) polarization free energy of solvation -28.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds