Wall clock time and date at job start Tue Mar 31 2020 07:28:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47092 * 2 1 4 4 C 1.53002 * 109.47092 * 179.97438 * 3 2 1 5 5 N 1.46495 * 109.46774 * 179.97438 * 4 3 2 6 6 C 1.37163 * 120.00304 * 269.99621 * 5 4 3 7 7 H 1.07998 * 120.00252 * 156.13399 * 6 5 4 8 8 C 1.38883 * 119.99782 * 336.13955 * 6 5 4 9 9 N 1.31472 * 120.00161 * 332.28906 * 8 6 5 10 10 Si 1.86800 * 120.00107 * 152.29228 * 8 6 5 11 11 H 1.48499 * 109.47275 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47178 * 119.99768 * 10 8 6 13 13 H 1.48503 * 109.47191 * 239.99855 * 10 8 6 14 14 C 1.34773 * 120.00112 * 89.99975 * 5 4 3 15 15 O 1.21597 * 119.99940 * 7.94648 * 14 5 4 16 16 N 1.34775 * 120.00165 * 187.94523 * 14 5 4 17 17 C 1.40109 * 120.00077 * 186.01736 * 16 14 5 18 18 C 1.38850 * 120.01675 * 324.33720 * 17 16 14 19 19 C 1.38091 * 119.98218 * 180.25068 * 18 17 16 20 20 C 1.38716 * 120.01563 * 359.49110 * 19 18 17 21 21 O 1.35984 * 119.98294 * 180.25205 * 20 19 18 22 22 C 1.42900 * 116.99789 * 180.02562 * 21 20 19 23 23 C 1.38719 * 120.03561 * 0.23182 * 20 19 18 24 24 C 1.38097 * 120.01137 * 0.02562 * 23 20 19 25 25 H 1.09002 * 109.47030 * 60.00655 * 1 2 3 26 26 H 1.09004 * 109.47054 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47356 * 300.00369 * 1 2 3 28 28 H 1.08999 * 109.47356 * 239.99631 * 2 1 3 29 29 H 1.09002 * 109.47030 * 119.99345 * 2 1 3 30 30 H 1.08999 * 109.47321 * 59.99610 * 3 2 1 31 31 H 1.09002 * 109.46648 * 299.99578 * 3 2 1 32 32 H 1.08999 * 109.47356 * 59.99631 * 4 3 2 33 33 H 1.09003 * 109.46653 * 299.99731 * 4 3 2 34 34 H 0.97000 * 120.00650 * 185.02084 * 9 8 6 35 35 H 0.97006 * 120.00351 * 6.01783 * 16 14 5 36 36 H 1.07996 * 120.00727 * 359.97438 * 18 17 16 37 37 H 1.08002 * 119.99128 * 179.76879 * 19 18 17 38 38 H 1.08997 * 109.47056 * 180.02562 * 22 21 20 39 39 H 1.09004 * 109.46840 * 300.00192 * 22 21 20 40 40 H 1.09003 * 109.47573 * 59.99970 * 22 21 20 41 41 H 1.07996 * 119.99873 * 180.02562 * 23 20 19 42 42 H 1.07995 * 120.00350 * 180.02562 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8237 0.0000 6 6 4.2874 3.4696 -1.1881 7 1 4.2675 4.5487 -1.2288 8 6 4.5450 2.7360 -2.3389 9 7 5.0986 1.5468 -2.2503 10 14 4.1048 3.4389 -4.0127 11 1 3.4974 4.7831 -3.8410 12 1 5.3325 3.5521 -4.8404 13 1 3.1341 2.5401 -4.6874 14 6 4.2824 3.4598 1.1669 15 8 4.2195 2.8469 2.2152 16 7 4.5762 4.7751 1.1719 17 6 4.9326 5.4088 2.3695 18 6 4.3329 5.0274 3.5624 19 6 4.6809 5.6560 4.7416 20 6 5.6370 6.6610 4.7363 21 8 5.9829 7.2761 5.8987 22 6 6.9738 8.3027 5.8196 23 6 6.2407 7.0387 3.5459 24 6 5.8898 6.4146 2.3650 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5137 0.8901 30 1 1.6766 1.9564 0.8899 31 1 1.6767 1.9563 -0.8901 32 1 3.9338 0.9285 -0.8891 33 1 3.9329 0.9288 0.8909 34 1 5.3452 1.0654 -3.0554 35 1 4.5409 5.2831 0.3462 36 1 3.5913 4.2423 3.5672 37 1 4.2118 5.3619 5.6690 38 1 7.1564 8.7089 6.8144 39 1 7.8990 7.8847 5.4227 40 1 6.6222 9.0971 5.1612 41 1 6.9853 7.8210 3.5425 42 1 6.3602 6.7085 1.4384 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001202391509.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:45 Heat of formation + Delta-G solvation = -50.881179 kcal Electronic energy + Delta-G solvation = -23333.791751 eV Core-core repulsion = 19893.003506 eV Total energy + Delta-G solvation = -3440.788245 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.54125 -40.58049 -38.57916 -37.15181 -35.65018 -34.91588 -33.41347 -32.01601 -30.42838 -29.30959 -27.83891 -26.82623 -24.63847 -23.73935 -22.79090 -21.90795 -21.29610 -19.67948 -19.14678 -18.74097 -17.48558 -17.01654 -16.54638 -16.44006 -16.22487 -16.11522 -15.69917 -15.32919 -14.97189 -14.68996 -14.54007 -14.13910 -13.78069 -13.70456 -13.63169 -13.54064 -13.08484 -12.95526 -12.80827 -12.73804 -12.17434 -12.14507 -12.03116 -11.93853 -11.81208 -11.76356 -11.42369 -11.07853 -10.80939 -10.56719 -9.91788 -9.52808 -8.56184 -8.25181 -5.91171 0.40261 0.46685 1.41846 1.50752 1.61625 2.06903 2.31617 2.42110 2.49772 2.89020 3.12473 3.59689 3.90625 4.00380 4.10095 4.22733 4.32053 4.34519 4.44284 4.47877 4.52550 4.57737 4.71893 4.78560 4.85271 4.90852 5.00221 5.03462 5.06891 5.09624 5.20749 5.34492 5.35922 5.43146 5.44443 5.51571 5.64238 5.65558 5.97118 6.09263 6.38248 6.53932 6.59634 7.16783 7.79604 8.11524 8.73926 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.016784 B = 0.004124 C = 0.003461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.871389 B = 6787.559299 C = 8087.221745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.116 4.116 3 C -0.112 4.112 4 C 0.113 3.887 5 N -0.469 5.469 6 C -0.359 4.359 7 H 0.101 0.899 8 C 0.003 3.997 9 N -0.887 5.887 10 Si 0.982 3.018 11 H -0.258 1.258 12 H -0.281 1.281 13 H -0.280 1.280 14 C 0.655 3.345 15 O -0.656 6.656 16 N -0.678 5.678 17 C 0.122 3.878 18 C -0.104 4.104 19 C -0.142 4.142 20 C 0.096 3.904 21 O -0.335 6.335 22 C 0.017 3.983 23 C -0.178 4.178 24 C -0.115 4.115 25 H 0.054 0.946 26 H 0.071 0.929 27 H 0.052 0.948 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.035 0.965 31 H 0.052 0.948 32 H 0.115 0.885 33 H 0.029 0.971 34 H 0.273 0.727 35 H 0.412 0.588 36 H 0.120 0.880 37 H 0.137 0.863 38 H 0.119 0.881 39 H 0.062 0.938 40 H 0.067 0.933 41 H 0.162 0.838 42 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.534 9.862 5.838 11.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.154 4.154 3 C -0.151 4.151 4 C -0.011 4.011 5 N -0.191 5.191 6 C -0.486 4.486 7 H 0.118 0.882 8 C -0.199 4.199 9 N -0.525 5.525 10 Si 0.806 3.194 11 H -0.181 1.181 12 H -0.207 1.207 13 H -0.205 1.205 14 C 0.358 3.642 15 O -0.542 6.542 16 N -0.327 5.327 17 C 0.026 3.974 18 C -0.125 4.125 19 C -0.161 4.161 20 C 0.050 3.950 21 O -0.249 6.249 22 C -0.077 4.077 23 C -0.197 4.197 24 C -0.136 4.136 25 H 0.073 0.927 26 H 0.090 0.910 27 H 0.071 0.929 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.054 0.946 31 H 0.071 0.929 32 H 0.132 0.868 33 H 0.048 0.952 34 H 0.083 0.917 35 H 0.251 0.749 36 H 0.137 0.863 37 H 0.155 0.845 38 H 0.137 0.863 39 H 0.080 0.920 40 H 0.085 0.915 41 H 0.180 0.820 42 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -0.643 9.161 6.524 11.265 hybrid contribution 0.134 0.191 -1.316 1.337 sum -0.509 9.352 5.208 10.717 Atomic orbital electron populations 1.21711 0.94157 1.02349 1.01733 1.21401 0.97083 0.95195 1.01693 1.21756 0.95731 0.97618 1.00018 1.21697 0.93211 0.83083 1.03080 1.42997 1.59933 1.13074 1.03071 1.19652 1.51077 0.92721 0.85119 0.88189 1.25941 0.94853 0.96236 1.02891 1.69876 1.36401 1.15679 1.30582 0.85055 0.78029 0.78937 0.77396 1.18129 1.20684 1.20523 1.16333 0.80870 0.82216 0.84796 1.90689 1.64043 1.67190 1.32300 1.42513 1.72325 1.07936 1.09894 1.17876 0.97108 0.96248 0.86152 1.21096 1.00200 0.99473 0.91687 1.20386 0.99948 0.97351 0.98417 1.18984 0.96069 0.94202 0.85740 1.86044 1.58369 1.51489 1.29019 1.23345 0.89978 0.88894 1.05490 1.21244 1.03778 1.03935 0.90748 1.20939 0.95563 0.97318 0.99772 0.92680 0.91045 0.92936 0.92106 0.92409 0.94604 0.92927 0.86802 0.95200 0.91689 0.74913 0.86259 0.84501 0.86283 0.91958 0.91478 0.82014 0.83666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.89 9.91 71.98 0.71 -3.18 16 2 C -0.12 -3.95 5.93 30.60 0.18 -3.77 16 3 C -0.11 -4.74 5.54 30.60 0.17 -4.57 16 4 C 0.11 5.64 5.07 86.38 0.44 6.08 16 5 N -0.47 -24.17 2.60 -652.41 -1.70 -25.86 16 6 C -0.36 -17.80 9.12 84.01 0.77 -17.03 16 7 H 0.10 4.56 6.24 -2.91 -0.02 4.54 16 8 C 0.00 0.16 4.95 84.90 0.42 0.58 16 9 N -0.89 -46.15 10.95 21.65 0.24 -45.91 16 10 Si 0.98 38.26 29.64 68.60 2.03 40.29 16 11 H -0.26 -9.50 7.11 99.48 0.71 -8.80 16 12 H -0.28 -10.83 7.11 99.48 0.71 -10.12 16 13 H -0.28 -10.89 7.11 99.48 0.71 -10.18 16 14 C 0.65 33.46 8.06 179.06 1.44 34.91 16 15 O -0.66 -36.53 13.33 -4.02 -0.05 -36.58 16 16 N -0.68 -29.02 5.20 -317.07 -1.65 -30.67 16 17 C 0.12 4.71 6.30 38.11 0.24 4.95 16 18 C -0.10 -4.09 8.70 22.38 0.19 -3.89 16 19 C -0.14 -4.72 9.98 22.35 0.22 -4.50 16 20 C 0.10 2.78 6.69 22.50 0.15 2.93 16 21 O -0.33 -8.37 10.50 -93.37 -0.98 -9.35 16 22 C 0.02 0.25 9.81 113.37 1.11 1.37 16 23 C -0.18 -4.65 9.03 22.35 0.20 -4.45 16 24 C -0.11 -3.52 9.96 22.38 0.22 -3.29 16 25 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 27 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 29 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 32 H 0.11 6.00 4.85 -2.39 -0.01 5.98 16 33 H 0.03 1.57 7.33 -2.39 -0.02 1.55 16 34 H 0.27 13.29 8.32 -92.71 -0.77 12.52 16 35 H 0.41 16.03 6.64 -92.70 -0.62 15.42 16 36 H 0.12 5.35 6.22 -2.91 -0.02 5.33 16 37 H 0.14 4.10 8.06 -2.91 -0.02 4.07 16 38 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.06 0.82 7.66 -2.38 -0.02 0.80 16 40 H 0.07 0.82 7.66 -2.39 -0.02 0.80 16 41 H 0.16 2.96 6.29 -2.91 -0.02 2.94 16 42 H 0.15 3.77 8.06 -2.91 -0.02 3.75 16 Total: -1.00 -64.79 345.04 4.78 -60.01 By element: Atomic # 1 Polarization: 41.53 SS G_CDS: 0.41 Total: 41.94 kcal Atomic # 6 Polarization: -0.34 SS G_CDS: 6.48 Total: 6.14 kcal Atomic # 7 Polarization: -99.33 SS G_CDS: -3.11 Total: -102.44 kcal Atomic # 8 Polarization: -44.90 SS G_CDS: -1.03 Total: -45.93 kcal Atomic # 14 Polarization: 38.26 SS G_CDS: 2.03 Total: 40.29 kcal Total: -64.79 4.78 -60.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202391509.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.127 kcal (2) G-P(sol) polarization free energy of solvation -64.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds