Wall clock time and date at job start Tue Mar 31 2020 07:01:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.52996 * 109.47230 * 0.06765 * 3 2 1 5 5 C 1.52997 * 109.46956 * 179.97438 * 4 3 2 6 6 C 1.50710 * 109.47098 * 179.97438 * 5 4 3 7 7 O 1.21280 * 119.99951 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99647 * 179.97438 * 6 5 4 9 9 C 1.43592 * 116.25702 * 357.47887 * 8 6 5 10 10 C 1.51979 * 111.25294 * 204.20898 * 9 8 6 11 11 O 1.41314 * 111.53938 * 318.86099 * 10 9 8 12 12 C 1.40785 * 118.40142 * 56.94134 * 11 10 9 13 13 H 1.09004 * 109.34987 * 188.31055 * 12 11 10 14 14 C 1.54200 * 110.23278 * 67.70037 * 12 11 10 15 15 N 1.46875 * 106.39563 * 210.33894 * 14 12 11 16 16 C 1.36940 * 125.36298 * 197.84003 * 15 14 12 17 17 H 1.07995 * 120.00261 * 179.97438 * 16 15 14 18 18 C 1.38815 * 119.99788 * 0.02562 * 16 15 14 19 19 N 1.31619 * 120.00164 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99733 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47079 * 89.99864 * 20 18 16 22 22 H 1.48502 * 109.46953 * 209.99840 * 20 18 16 23 23 H 1.48496 * 109.46981 * 329.99717 * 20 18 16 24 24 C 1.46783 * 109.27147 * 17.83825 * 15 14 12 25 25 C 1.44540 * 117.31712 * 176.64446 * 8 6 5 26 26 H 1.08996 * 109.49396 * 285.87580 * 25 8 6 27 27 H 4.44646 * 5.63401 * 180.02562 * 4 1 2 28 28 H 1.09002 * 109.46748 * 240.06857 * 3 2 1 29 29 H 1.08996 * 109.46806 * 120.07144 * 3 2 1 30 30 H 1.09002 * 109.47180 * 60.00356 * 4 3 2 31 31 H 1.08996 * 109.47536 * 299.99932 * 4 3 2 32 32 H 1.09001 * 109.47211 * 60.00524 * 5 4 3 33 33 H 1.08996 * 109.47504 * 300.00055 * 5 4 3 34 34 H 1.08996 * 109.68706 * 83.53636 * 9 8 6 35 35 H 1.08999 * 108.87895 * 324.35997 * 9 8 6 36 36 H 1.08997 * 109.06854 * 198.32404 * 10 9 8 37 37 H 1.09009 * 109.06281 * 79.39146 * 10 9 8 38 38 H 1.08999 * 110.07045 * 91.10418 * 14 12 11 39 39 H 1.09001 * 110.06946 * 329.57191 * 14 12 11 40 40 H 0.96997 * 119.99722 * 180.02562 * 19 18 16 41 41 H 1.08991 * 109.83066 * 239.35535 * 24 15 14 42 42 H 1.09002 * 109.89552 * 118.43337 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1566 -1.4416 -0.0017 5 6 4.6866 -1.4408 -0.0023 6 6 5.1897 -2.8615 -0.0034 7 8 4.4020 -3.7837 -0.0041 8 7 6.5149 -3.1070 -0.0046 9 6 7.3738 -1.9577 -0.0615 10 6 8.7334 -2.3142 -0.6396 11 8 9.1977 -3.5546 -0.1469 12 6 8.3918 -4.6936 -0.3343 13 1 8.8128 -5.5298 0.2241 14 6 8.3187 -5.0546 -1.8317 15 7 7.0061 -5.6784 -2.0441 16 6 6.6598 -6.4487 -3.1221 17 1 5.6663 -6.8666 -3.1904 18 6 7.5862 -6.6932 -4.1266 19 7 8.7972 -6.1844 -4.0432 20 14 7.1136 -7.7433 -5.5975 21 1 6.5549 -6.8762 -6.6658 22 1 8.3165 -8.4474 -6.1099 23 1 6.0937 -8.7412 -5.1860 24 6 6.1240 -5.3463 -0.9189 25 6 6.9336 -4.4884 0.0696 26 1 6.7813 -4.8607 1.0826 27 1 -1.0498 -0.0005 -0.0002 28 1 3.0090 0.5136 0.8906 29 1 3.0090 0.5158 -0.8893 30 1 2.7936 -1.9545 -0.8923 31 1 2.7936 -1.9567 0.8876 32 1 5.0501 -0.9278 0.8881 33 1 5.0494 -0.9259 -0.8919 34 1 7.5100 -1.5511 0.9406 35 1 6.9079 -1.2000 -0.6914 36 1 9.4484 -1.5354 -0.3744 37 1 8.6552 -2.3691 -1.7255 38 1 9.1123 -5.7570 -2.0863 39 1 8.4072 -4.1534 -2.4385 40 1 9.4443 -6.3550 -4.7453 41 1 5.7905 -6.2605 -0.4281 42 1 5.2620 -4.7834 -1.2770 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001217752093.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:08 Heat of formation + Delta-G solvation = 18.453390 kcal Electronic energy + Delta-G solvation = -24196.897819 eV Core-core repulsion = 20759.116147 eV Total energy + Delta-G solvation = -3437.781673 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -40.88847 -38.52849 -36.08741 -35.60288 -34.89730 -32.70103 -32.07110 -30.01244 -28.62742 -27.84791 -26.82567 -24.61504 -23.41124 -22.60611 -20.69908 -19.82394 -18.59083 -18.21046 -17.41488 -16.88480 -16.51632 -16.11165 -15.32160 -15.18639 -14.79888 -14.64697 -14.45795 -13.92895 -13.73283 -13.49009 -13.00182 -12.93972 -12.63847 -12.30333 -12.10504 -11.92137 -11.68490 -11.29861 -11.09892 -11.07661 -10.86237 -10.72670 -10.42468 -10.38080 -10.33103 -10.23908 -10.07493 -9.74181 -9.33823 -8.93714 -8.58471 -8.22713 -6.78060 -5.66380 -3.04440 2.64544 2.69699 2.79513 3.12025 3.41779 3.46791 3.49110 4.08131 4.19679 4.48090 4.54369 4.83546 4.85548 4.93678 5.04211 5.14137 5.24473 5.33264 5.36919 5.42397 5.44598 5.48708 5.57174 5.69572 5.74384 5.84206 5.89140 5.94081 6.00829 6.12977 6.19241 6.26170 6.59709 6.85048 7.18671 7.37438 7.47465 7.49306 7.62704 7.74345 7.89114 8.30580 8.40821 9.23896 9.84334 10.47047 11.40479 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.014994 B = 0.004556 C = 0.003772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.994910 B = 6144.462809 C = 7420.684985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.183 4.183 3 C -0.014 4.014 4 C -0.100 4.100 5 C -0.140 4.140 6 C 0.501 3.499 7 O -0.524 6.524 8 N -0.589 5.589 9 C 0.077 3.923 10 C 0.056 3.944 11 O -0.370 6.370 12 C 0.067 3.933 13 H 0.112 0.888 14 C 0.141 3.859 15 N -0.604 5.604 16 C -0.220 4.220 17 H 0.079 0.921 18 C -0.011 4.011 19 N -0.925 5.925 20 Si 0.914 3.086 21 H -0.290 1.290 22 H -0.290 1.290 23 H -0.281 1.281 24 C 0.123 3.877 25 C 0.114 3.886 26 H 0.070 0.930 27 H 0.216 0.784 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.064 0.936 35 H 0.082 0.918 36 H 0.102 0.898 37 H 0.059 0.941 38 H 0.098 0.902 39 H 0.021 0.979 40 H 0.252 0.748 41 H 0.031 0.969 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.230 14.417 10.292 18.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.183 4.183 3 C -0.050 4.050 4 C -0.138 4.138 5 C -0.180 4.180 6 C 0.289 3.711 7 O -0.400 6.400 8 N -0.322 5.322 9 C -0.047 4.047 10 C -0.021 4.021 11 O -0.287 6.287 12 C 0.007 3.993 13 H 0.130 0.870 14 C 0.016 3.984 15 N -0.332 5.332 16 C -0.348 4.348 17 H 0.097 0.903 18 C -0.207 4.207 19 N -0.573 5.573 20 Si 0.745 3.255 21 H -0.217 1.217 22 H -0.217 1.217 23 H -0.206 1.206 24 C -0.003 4.003 25 C 0.010 3.990 26 H 0.088 0.912 27 H 0.232 0.768 28 H 0.104 0.896 29 H 0.105 0.895 30 H 0.095 0.905 31 H 0.093 0.907 32 H 0.112 0.888 33 H 0.113 0.887 34 H 0.082 0.918 35 H 0.101 0.899 36 H 0.120 0.880 37 H 0.077 0.923 38 H 0.116 0.884 39 H 0.039 0.961 40 H 0.062 0.938 41 H 0.049 0.951 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.308 13.800 10.197 17.961 hybrid contribution -0.593 -0.359 -0.960 1.184 sum -5.901 13.441 9.237 17.343 Atomic orbital electron populations 1.24890 0.96001 1.00882 1.01439 1.23130 0.94609 1.00348 1.00180 1.18778 0.84830 0.98136 1.03272 1.21288 0.93081 0.94894 1.04527 1.21752 0.97241 0.94730 1.04239 1.20733 0.82202 0.91562 0.76562 1.90677 1.55343 1.45897 1.48109 1.46404 1.06153 1.06236 1.73452 1.21437 0.93261 0.88415 1.01565 1.22241 0.93938 0.86802 0.99168 1.86850 1.46350 1.15146 1.80376 1.23063 0.87949 0.87156 1.01083 0.87008 1.22038 0.90651 0.97953 0.87799 1.44275 1.08787 1.59012 1.21080 1.19086 0.97360 1.22299 0.96066 0.90348 1.24790 0.96075 1.00944 0.98869 1.69866 1.04320 1.49023 1.34126 0.86069 0.77121 0.79816 0.82507 1.21698 1.21652 1.20635 1.21815 0.94358 0.95652 0.88437 1.21608 0.97069 0.80554 0.99790 0.91237 0.76757 0.89563 0.89456 0.90548 0.90745 0.88829 0.88696 0.91809 0.89938 0.88021 0.92293 0.88401 0.96128 0.93765 0.95073 0.91809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.14 19.25 29.55 0.57 -1.57 16 2 C -0.18 -1.97 13.34 -37.12 -0.50 -2.47 16 3 C -0.01 -0.12 5.70 -29.52 -0.17 -0.29 16 4 C -0.10 -1.09 4.46 -26.73 -0.12 -1.21 16 5 C -0.14 -1.45 4.21 -27.88 -0.12 -1.57 16 6 C 0.50 7.88 7.04 -10.98 -0.08 7.81 16 7 O -0.52 -10.23 12.98 5.56 0.07 -10.16 16 8 N -0.59 -9.42 3.05 -170.04 -0.52 -9.94 16 9 C 0.08 0.94 5.79 -6.10 -0.04 0.90 16 10 C 0.06 0.78 6.73 36.64 0.25 1.03 16 11 O -0.37 -6.50 10.25 -34.35 -0.35 -6.85 16 12 C 0.07 1.30 3.91 -26.26 -0.10 1.20 16 13 H 0.11 2.09 8.14 -51.93 -0.42 1.67 16 14 C 0.14 3.47 5.26 -3.21 -0.02 3.45 16 15 N -0.60 -15.99 3.39 -171.42 -0.58 -16.58 16 16 C -0.22 -6.33 10.25 -15.06 -0.15 -6.48 16 17 H 0.08 2.22 7.83 -52.49 -0.41 1.81 16 18 C -0.01 -0.33 5.48 -17.43 -0.10 -0.42 16 19 N -0.92 -27.24 10.18 55.49 0.56 -26.68 16 20 Si 0.91 22.53 29.55 -169.99 -5.02 17.51 16 21 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 22 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 23 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 24 C 0.12 2.83 6.09 -3.42 -0.02 2.80 16 25 C 0.11 2.15 3.38 -68.66 -0.23 1.92 16 26 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 27 H 0.22 1.40 7.80 -54.10 -0.42 0.98 16 28 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.08 1.00 8.10 -51.93 -0.42 0.58 16 31 H 0.07 0.90 8.10 -51.93 -0.42 0.47 16 32 H 0.09 0.72 8.04 -51.93 -0.42 0.30 16 33 H 0.09 0.84 7.06 -51.93 -0.37 0.47 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.08 0.79 6.15 -51.93 -0.32 0.47 16 36 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 37 H 0.06 0.95 6.73 -51.92 -0.35 0.60 16 38 H 0.10 2.71 6.25 -51.93 -0.32 2.38 16 39 H 0.02 0.55 6.47 -51.93 -0.34 0.21 16 40 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 41 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.06 1.57 5.14 -51.93 -0.27 1.30 16 LS Contribution 334.60 15.07 5.04 5.04 Total: -1.00 -34.18 334.60 -7.76 -41.95 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -6.15 Total: 0.60 kcal Atomic # 6 Polarization: 5.92 SS G_CDS: -0.82 Total: 5.10 kcal Atomic # 7 Polarization: -52.66 SS G_CDS: -0.53 Total: -53.19 kcal Atomic # 8 Polarization: -16.73 SS G_CDS: -0.28 Total: -17.01 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -34.18 -7.76 -41.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001217752093.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.402 kcal (2) G-P(sol) polarization free energy of solvation -34.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds