Wall clock time and date at job start Tue Mar 31 2020 07:01:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.52996 * 109.47230 * 0.06765 * 3 2 1 5 5 C 1.52997 * 109.46956 * 179.97438 * 4 3 2 6 6 C 1.50710 * 109.47098 * 179.97438 * 5 4 3 7 7 O 1.21280 * 119.99951 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99647 * 179.97438 * 6 5 4 9 9 C 1.43592 * 116.25702 * 357.47887 * 8 6 5 10 10 C 1.51979 * 111.25294 * 204.20898 * 9 8 6 11 11 O 1.41314 * 111.53938 * 318.86099 * 10 9 8 12 12 C 1.40785 * 118.40142 * 56.94134 * 11 10 9 13 13 H 1.09004 * 109.34987 * 188.31055 * 12 11 10 14 14 C 1.54200 * 110.23278 * 67.70037 * 12 11 10 15 15 N 1.46875 * 106.39563 * 210.33894 * 14 12 11 16 16 C 1.36940 * 125.36298 * 197.84003 * 15 14 12 17 17 H 1.07995 * 120.00261 * 179.97438 * 16 15 14 18 18 C 1.38815 * 119.99788 * 0.02562 * 16 15 14 19 19 N 1.31619 * 120.00164 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99733 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47079 * 89.99864 * 20 18 16 22 22 H 1.48502 * 109.46953 * 209.99840 * 20 18 16 23 23 H 1.48496 * 109.46981 * 329.99717 * 20 18 16 24 24 C 1.46783 * 109.27147 * 17.83825 * 15 14 12 25 25 C 1.44540 * 117.31712 * 176.64446 * 8 6 5 26 26 H 1.08996 * 109.49396 * 285.87580 * 25 8 6 27 27 H 4.44646 * 5.63401 * 180.02562 * 4 1 2 28 28 H 1.09002 * 109.46748 * 240.06857 * 3 2 1 29 29 H 1.08996 * 109.46806 * 120.07144 * 3 2 1 30 30 H 1.09002 * 109.47180 * 60.00356 * 4 3 2 31 31 H 1.08996 * 109.47536 * 299.99932 * 4 3 2 32 32 H 1.09001 * 109.47211 * 60.00524 * 5 4 3 33 33 H 1.08996 * 109.47504 * 300.00055 * 5 4 3 34 34 H 1.08996 * 109.68706 * 83.53636 * 9 8 6 35 35 H 1.08999 * 108.87895 * 324.35997 * 9 8 6 36 36 H 1.08997 * 109.06854 * 198.32404 * 10 9 8 37 37 H 1.09009 * 109.06281 * 79.39146 * 10 9 8 38 38 H 1.08999 * 110.07045 * 91.10418 * 14 12 11 39 39 H 1.09001 * 110.06946 * 329.57191 * 14 12 11 40 40 H 0.96997 * 119.99722 * 180.02562 * 19 18 16 41 41 H 1.08991 * 109.83066 * 239.35535 * 24 15 14 42 42 H 1.09002 * 109.89552 * 118.43337 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1566 -1.4416 -0.0017 5 6 4.6866 -1.4408 -0.0023 6 6 5.1897 -2.8615 -0.0034 7 8 4.4020 -3.7837 -0.0041 8 7 6.5149 -3.1070 -0.0046 9 6 7.3738 -1.9577 -0.0615 10 6 8.7334 -2.3142 -0.6396 11 8 9.1977 -3.5546 -0.1469 12 6 8.3918 -4.6936 -0.3343 13 1 8.8128 -5.5298 0.2241 14 6 8.3187 -5.0546 -1.8317 15 7 7.0061 -5.6784 -2.0441 16 6 6.6598 -6.4487 -3.1221 17 1 5.6663 -6.8666 -3.1904 18 6 7.5862 -6.6932 -4.1266 19 7 8.7972 -6.1844 -4.0432 20 14 7.1136 -7.7433 -5.5975 21 1 6.5549 -6.8762 -6.6658 22 1 8.3165 -8.4474 -6.1099 23 1 6.0937 -8.7412 -5.1860 24 6 6.1240 -5.3463 -0.9189 25 6 6.9336 -4.4884 0.0696 26 1 6.7813 -4.8607 1.0826 27 1 -1.0498 -0.0005 -0.0002 28 1 3.0090 0.5136 0.8906 29 1 3.0090 0.5158 -0.8893 30 1 2.7936 -1.9545 -0.8923 31 1 2.7936 -1.9567 0.8876 32 1 5.0501 -0.9278 0.8881 33 1 5.0494 -0.9259 -0.8919 34 1 7.5100 -1.5511 0.9406 35 1 6.9079 -1.2000 -0.6914 36 1 9.4484 -1.5354 -0.3744 37 1 8.6552 -2.3691 -1.7255 38 1 9.1123 -5.7570 -2.0863 39 1 8.4072 -4.1534 -2.4385 40 1 9.4443 -6.3550 -4.7453 41 1 5.7905 -6.2605 -0.4281 42 1 5.2620 -4.7834 -1.2770 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001217752093.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:02 Heat of formation + Delta-G solvation = -4.831012 kcal Electronic energy + Delta-G solvation = -24197.907507 eV Core-core repulsion = 20759.116147 eV Total energy + Delta-G solvation = -3438.791360 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 4.11 seconds Orbital eigenvalues (eV) -42.22362 -39.87351 -37.71544 -36.54460 -36.17945 -34.41223 -33.14327 -31.68506 -29.73666 -29.51099 -28.17967 -26.48432 -24.71585 -23.73126 -22.30853 -21.24241 -19.85639 -19.22774 -18.95367 -18.23014 -18.05079 -17.20036 -16.88728 -16.48714 -16.27226 -15.88680 -15.61024 -15.49754 -15.07156 -14.75974 -14.37217 -14.22728 -13.99484 -13.68504 -13.44427 -13.24283 -13.06526 -12.96077 -12.81400 -12.37984 -12.26826 -12.16314 -12.09770 -11.97214 -11.81760 -11.65135 -11.12785 -10.94687 -10.80377 -10.78068 -10.33766 -9.52796 -8.91136 -7.85868 -5.27814 1.42412 1.44449 1.53921 1.62077 1.80251 1.94613 1.99190 2.44753 2.77607 3.25846 3.36381 3.54895 3.61428 3.73491 3.80955 3.97300 4.05479 4.11606 4.16122 4.27199 4.39427 4.41994 4.49612 4.54210 4.68169 4.69309 4.80677 4.82074 4.90576 5.01667 5.09334 5.22132 5.22941 5.35372 5.36714 5.46807 5.65826 5.67957 6.18663 6.29336 6.45301 6.74155 7.04878 7.20532 7.71172 8.32455 9.18392 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.014994 B = 0.004556 C = 0.003772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.994910 B = 6144.462809 C = 7420.684985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.216 4.216 3 C -0.008 4.008 4 C -0.094 4.094 5 C -0.126 4.126 6 C 0.491 3.509 7 O -0.573 6.573 8 N -0.596 5.596 9 C 0.072 3.928 10 C 0.045 3.955 11 O -0.374 6.374 12 C 0.085 3.915 13 H 0.119 0.881 14 C 0.151 3.849 15 N -0.622 5.622 16 C -0.246 4.246 17 H 0.073 0.927 18 C -0.060 4.060 19 N -0.946 5.946 20 Si 0.982 3.018 21 H -0.286 1.286 22 H -0.287 1.287 23 H -0.272 1.272 24 C 0.124 3.876 25 C 0.126 3.874 26 H 0.084 0.916 27 H 0.239 0.761 28 H 0.113 0.887 29 H 0.104 0.896 30 H 0.043 0.957 31 H 0.056 0.944 32 H 0.136 0.864 33 H 0.119 0.881 34 H 0.104 0.896 35 H 0.114 0.886 36 H 0.147 0.853 37 H 0.029 0.971 38 H 0.061 0.939 39 H -0.005 1.005 40 H 0.249 0.751 41 H 0.019 0.981 42 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.165 16.941 11.373 21.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.216 4.216 3 C -0.044 4.044 4 C -0.133 4.133 5 C -0.166 4.166 6 C 0.281 3.719 7 O -0.453 6.453 8 N -0.329 5.329 9 C -0.051 4.051 10 C -0.031 4.031 11 O -0.291 6.291 12 C 0.026 3.974 13 H 0.137 0.863 14 C 0.026 3.974 15 N -0.350 5.350 16 C -0.375 4.375 17 H 0.091 0.909 18 C -0.253 4.253 19 N -0.595 5.595 20 Si 0.809 3.191 21 H -0.212 1.212 22 H -0.213 1.213 23 H -0.197 1.197 24 C -0.002 4.002 25 C 0.020 3.980 26 H 0.102 0.898 27 H 0.255 0.745 28 H 0.131 0.869 29 H 0.122 0.878 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.154 0.846 33 H 0.137 0.863 34 H 0.122 0.878 35 H 0.132 0.868 36 H 0.165 0.835 37 H 0.047 0.953 38 H 0.079 0.921 39 H 0.013 0.987 40 H 0.059 0.941 41 H 0.037 0.963 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -5.235 16.370 11.299 20.568 hybrid contribution -0.641 -1.111 -1.319 1.840 sum -5.877 15.259 9.979 19.156 Atomic orbital electron populations 1.25701 0.97125 1.00128 1.01031 1.23869 0.95913 1.01066 1.00748 1.18840 0.83692 0.96535 1.05356 1.21177 0.93791 0.96158 1.02142 1.21806 0.96321 0.91139 1.07287 1.21769 0.81580 0.93455 0.75059 1.90656 1.56440 1.47952 1.50275 1.46575 1.07183 1.05828 1.73309 1.21811 0.91388 0.87400 1.04452 1.22626 0.96712 0.86136 0.97649 1.86853 1.46327 1.15737 1.80175 1.22678 0.88945 0.88690 0.97119 0.86316 1.21774 0.88780 0.95626 0.91236 1.44536 1.10182 1.58845 1.21417 1.19377 0.97469 1.23191 0.97463 0.90916 1.25628 0.96031 1.02169 1.01475 1.70108 1.05011 1.49780 1.34630 0.85040 0.76954 0.78215 0.78872 1.21240 1.21310 1.19711 1.21835 0.94176 0.95791 0.88353 1.21267 0.95434 0.82342 0.98914 0.89806 0.74458 0.86864 0.87770 0.93815 0.92470 0.84586 0.86269 0.87764 0.86796 0.83550 0.95257 0.92055 0.98696 0.94115 0.96324 0.93388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -4.18 19.25 74.32 1.43 -2.75 16 2 C -0.22 -4.37 13.34 31.13 0.42 -3.95 16 3 C -0.01 -0.12 5.70 28.79 0.16 0.05 16 4 C -0.09 -1.93 4.46 30.59 0.14 -1.80 16 5 C -0.13 -2.18 4.21 29.85 0.13 -2.05 16 6 C 0.49 14.71 7.04 87.66 0.62 15.33 16 7 O -0.57 -22.81 12.98 -3.03 -0.04 -22.85 16 8 N -0.60 -17.87 3.05 -810.27 -2.47 -20.34 16 9 C 0.07 1.43 5.79 86.58 0.50 1.93 16 10 C 0.05 1.14 6.73 71.65 0.48 1.62 16 11 O -0.37 -12.52 10.25 -145.84 -1.49 -14.02 16 12 C 0.09 3.34 3.91 30.90 0.12 3.46 16 13 H 0.12 4.43 8.14 -2.38 -0.02 4.41 16 14 C 0.15 7.73 5.26 86.71 0.46 8.19 16 15 N -0.62 -34.36 3.39 -696.25 -2.36 -36.71 16 16 C -0.25 -14.73 10.25 84.03 0.86 -13.86 16 17 H 0.07 4.29 7.83 -2.91 -0.02 4.27 16 18 C -0.06 -3.53 5.48 84.86 0.47 -3.06 16 19 N -0.95 -57.55 10.18 21.65 0.22 -57.33 16 20 Si 0.98 47.22 29.55 68.60 2.03 49.25 16 21 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 22 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 23 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 24 C 0.12 5.89 6.09 86.63 0.53 6.42 16 25 C 0.13 4.71 3.38 45.56 0.15 4.87 16 26 H 0.08 2.92 8.14 -2.39 -0.02 2.90 16 27 H 0.24 2.75 7.80 -4.43 -0.03 2.72 16 28 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.04 1.16 8.10 -2.39 -0.02 1.14 16 31 H 0.06 1.35 8.10 -2.39 -0.02 1.33 16 32 H 0.14 1.28 8.04 -2.39 -0.02 1.26 16 33 H 0.12 1.55 7.06 -2.39 -0.02 1.53 16 34 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.11 1.59 6.15 -2.39 -0.01 1.57 16 36 H 0.15 2.38 8.14 -2.39 -0.02 2.36 16 37 H 0.03 0.91 6.73 -2.38 -0.02 0.90 16 38 H 0.06 3.57 6.25 -2.39 -0.01 3.55 16 39 H 0.00 -0.27 6.47 -2.39 -0.02 -0.28 16 40 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 41 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.05 2.47 5.14 -2.39 -0.01 2.46 16 Total: -1.00 -80.09 334.60 3.35 -76.74 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: 1.01 Total: 10.87 kcal Atomic # 6 Polarization: 7.93 SS G_CDS: 6.46 Total: 14.39 kcal Atomic # 7 Polarization: -109.77 SS G_CDS: -4.61 Total: -114.38 kcal Atomic # 8 Polarization: -35.33 SS G_CDS: -1.53 Total: -36.87 kcal Atomic # 14 Polarization: 47.22 SS G_CDS: 2.03 Total: 49.25 kcal Total: -80.09 3.35 -76.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001217752093.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.912 kcal (2) G-P(sol) polarization free energy of solvation -80.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.11 seconds