Wall clock time and date at job start Tue Mar 31 2020 07:25:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46841 * 2 1 4 4 C 1.53004 * 109.46841 * 180.02562 * 3 2 1 5 5 N 1.46492 * 109.47051 * 179.97438 * 4 3 2 6 6 C 1.36937 * 120.00235 * 275.63714 * 5 4 3 7 7 H 1.08005 * 120.00206 * 33.99740 * 6 5 4 8 8 C 1.38816 * 120.00270 * 213.99851 * 6 5 4 9 9 N 1.31611 * 120.00005 * 22.95277 * 8 6 5 10 10 Si 1.86805 * 119.99927 * 202.95363 * 8 6 5 11 11 H 1.48498 * 109.47112 * 0.02562 * 10 8 6 12 12 H 1.48493 * 109.47056 * 120.00098 * 10 8 6 13 13 H 1.48495 * 109.46790 * 239.99996 * 10 8 6 14 14 C 1.46500 * 120.00265 * 95.64008 * 5 4 3 15 15 C 1.50709 * 109.46937 * 269.99804 * 14 5 4 16 16 C 1.38621 * 120.75432 * 269.97806 * 15 14 5 17 17 C 1.38582 * 119.35583 * 180.02562 * 16 15 14 18 18 N 1.31509 * 120.90867 * 0.02562 * 17 16 15 19 19 C 1.32755 * 121.63974 * 359.68025 * 18 17 16 20 20 C 1.48068 * 119.72510 * 180.29525 * 19 18 17 21 21 O 1.21427 * 119.99800 * 180.29416 * 20 19 18 22 22 O 1.34677 * 120.00339 * 0.28229 * 20 19 18 23 23 C 1.45200 * 117.00111 * 180.02562 * 22 20 19 24 24 C 1.38588 * 120.75088 * 89.99549 * 15 14 5 25 25 H 1.09000 * 109.47072 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47050 * 300.00054 * 1 2 3 27 27 H 1.09004 * 109.46917 * 60.00414 * 1 2 3 28 28 H 1.08998 * 109.47050 * 239.99946 * 2 1 3 29 29 H 1.08995 * 109.46844 * 119.99898 * 2 1 3 30 30 H 1.08998 * 109.47343 * 60.00125 * 3 2 1 31 31 H 1.09004 * 109.47027 * 299.99518 * 3 2 1 32 32 H 1.08998 * 109.47050 * 59.99946 * 4 3 2 33 33 H 1.08995 * 109.46844 * 299.99898 * 4 3 2 34 34 H 0.96996 * 120.00016 * 180.02562 * 9 8 6 35 35 H 1.08993 * 109.47650 * 150.00004 * 14 5 4 36 36 H 1.08997 * 109.47054 * 29.99174 * 14 5 4 37 37 H 1.07999 * 120.32356 * 359.97438 * 16 15 14 38 38 H 1.08004 * 119.54767 * 179.97438 * 17 16 15 39 39 H 1.08998 * 109.46711 * 180.02562 * 23 22 20 40 40 H 1.08998 * 109.46922 * 300.00052 * 23 22 20 41 41 H 1.08993 * 109.46594 * 60.00349 * 23 22 20 42 42 H 1.07999 * 120.47923 * 359.95627 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 7 4.0583 2.8237 -0.0013 6 6 4.1762 3.5078 -1.1817 7 1 3.4721 3.3305 -1.9812 8 6 5.2007 4.4291 -1.3507 9 7 6.2917 4.3415 -0.6198 10 14 5.0308 5.7932 -2.6155 11 1 3.7189 5.6724 -3.3007 12 1 5.1145 7.1111 -1.9364 13 1 6.1238 5.6809 -3.6144 14 6 4.4206 3.4732 1.2609 15 6 3.2117 4.1673 1.8338 16 6 2.9318 5.4859 1.5103 17 6 1.8126 6.0959 2.0542 18 7 1.0162 5.4414 2.8707 19 6 1.2451 4.1763 3.2015 20 6 0.3167 3.4780 4.1196 21 8 0.5243 2.3225 4.4297 22 8 -0.7576 4.1245 4.6111 23 6 -1.6239 3.3780 5.5059 24 6 2.3548 3.5019 2.6961 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8901 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.6767 1.9564 -0.8901 32 1 3.9330 0.9289 -0.8908 33 1 3.9337 0.9286 0.8891 34 1 7.0074 4.9855 -0.7376 35 1 5.2079 4.2049 1.0803 36 1 4.7769 2.7227 1.9665 37 1 3.5801 6.0327 0.8417 38 1 1.5918 7.1233 1.8046 39 1 -2.4485 4.0140 5.8276 40 1 -2.0196 2.5062 4.9850 41 1 -1.0539 3.0534 6.3764 42 1 2.5421 2.4739 2.9694 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001232773414.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:25:57 Heat of formation + Delta-G solvation = -41.898586 kcal Electronic energy + Delta-G solvation = -23953.128566 eV Core-core repulsion = 20512.729835 eV Total energy + Delta-G solvation = -3440.398731 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.54204 -39.30030 -36.54496 -36.34867 -34.29898 -32.47975 -31.34252 -31.08594 -28.18214 -27.81454 -26.22533 -24.24998 -24.00710 -22.38642 -21.30131 -20.43471 -20.16537 -17.73139 -17.06539 -16.62367 -16.29797 -15.79965 -15.44953 -14.90737 -14.81834 -14.46648 -13.94781 -13.71010 -13.55806 -13.49702 -13.41449 -12.81237 -12.51439 -12.21270 -12.12770 -11.92186 -11.54281 -11.32894 -11.14858 -10.79761 -10.75905 -10.74901 -10.64910 -10.56314 -10.48285 -10.19202 -10.04734 -9.91702 -9.22262 -8.95736 -8.82649 -8.63447 -6.81142 -5.97770 -3.50270 0.91103 1.69153 2.68264 2.72186 3.23783 3.35050 3.38130 4.19494 4.36029 4.43576 5.06074 5.06725 5.11786 5.13511 5.25480 5.38521 5.38816 5.42340 5.46550 5.58700 5.61049 5.66867 5.88296 5.93924 6.03409 6.15700 6.26259 6.31902 6.33347 6.34203 6.41823 6.51104 6.57081 6.65222 6.91829 6.95455 7.04542 7.11739 7.42660 7.67798 7.71502 8.21498 8.31159 8.98624 9.61832 10.17760 11.02401 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.014270 B = 0.005613 C = 0.004506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.718336 B = 4987.138733 C = 6212.267717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.121 4.121 3 C -0.140 4.140 4 C 0.146 3.854 5 N -0.573 5.573 6 C -0.253 4.253 7 H 0.064 0.936 8 C 0.011 3.989 9 N -0.882 5.882 10 Si 0.892 3.108 11 H -0.275 1.275 12 H -0.285 1.285 13 H -0.288 1.288 14 C 0.167 3.833 15 C -0.039 4.039 16 C -0.119 4.119 17 C 0.086 3.914 18 N -0.455 5.455 19 C 0.068 3.932 20 C 0.527 3.473 21 O -0.505 6.505 22 O -0.338 6.338 23 C 0.033 3.967 24 C -0.099 4.099 25 H 0.046 0.954 26 H 0.049 0.951 27 H 0.050 0.950 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.048 0.952 33 H 0.037 0.963 34 H 0.257 0.743 35 H 0.116 0.884 36 H 0.042 0.958 37 H 0.140 0.860 38 H 0.157 0.843 39 H 0.100 0.900 40 H 0.062 0.938 41 H 0.061 0.939 42 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.680 -1.208 7.313 12.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.160 4.160 3 C -0.180 4.180 4 C 0.020 3.980 5 N -0.291 5.291 6 C -0.383 4.383 7 H 0.082 0.918 8 C -0.190 4.190 9 N -0.524 5.524 10 Si 0.721 3.279 11 H -0.200 1.200 12 H -0.211 1.211 13 H -0.215 1.215 14 C 0.040 3.960 15 C -0.050 4.050 16 C -0.140 4.140 17 C -0.074 4.074 18 N -0.167 5.167 19 C -0.067 4.067 20 C 0.371 3.629 21 O -0.393 6.393 22 O -0.253 6.253 23 C -0.061 4.061 24 C -0.120 4.120 25 H 0.065 0.935 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.067 0.933 33 H 0.056 0.944 34 H 0.067 0.933 35 H 0.134 0.866 36 H 0.060 0.940 37 H 0.157 0.843 38 H 0.174 0.826 39 H 0.119 0.881 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -10.196 -1.124 7.764 12.864 hybrid contribution 0.382 0.277 -0.929 1.043 sum -9.813 -0.847 6.834 11.989 Atomic orbital electron populations 1.21754 0.96762 1.00628 1.01472 1.21481 0.95086 0.98140 1.01260 1.22251 0.99301 0.94804 1.01648 1.20962 0.91289 0.86482 0.99228 1.43764 1.75235 1.08253 1.01835 1.19112 1.07645 1.18727 0.92805 0.91811 1.25080 0.94090 1.01428 0.98355 1.69969 1.04540 1.35728 1.42161 0.86395 0.77986 0.82283 0.81270 1.19955 1.21104 1.21470 1.20226 0.92011 0.97497 0.86230 1.21856 0.99068 0.93364 0.90753 1.22422 0.97677 0.95628 0.98287 1.22714 0.91255 0.99834 0.93591 1.67506 1.29491 1.07175 1.12574 1.19795 0.94846 0.92065 1.00025 1.21034 0.79538 0.84250 0.78071 1.90821 1.73513 1.17336 1.57583 1.86696 1.35507 1.44466 1.58620 1.23279 0.93046 0.97165 0.92569 1.21976 0.92925 1.00928 0.96175 0.93479 0.93172 0.93116 0.92475 0.92578 0.92783 0.92522 0.93333 0.94419 0.93252 0.86649 0.93957 0.84251 0.82605 0.88138 0.91971 0.91983 0.84378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 9.91 37.16 0.37 -1.69 16 2 C -0.12 -1.83 5.93 -26.73 -0.16 -1.99 16 3 C -0.14 -2.54 5.51 -26.73 -0.15 -2.68 16 4 C 0.15 2.92 5.72 -4.04 -0.02 2.90 16 5 N -0.57 -13.06 2.44 -174.61 -0.43 -13.49 16 6 C -0.25 -6.35 9.48 -15.06 -0.14 -6.49 16 7 H 0.06 1.64 7.93 -52.48 -0.42 1.22 16 8 C 0.01 0.27 4.95 -17.43 -0.09 0.19 16 9 N -0.88 -23.13 11.31 55.49 0.63 -22.50 16 10 Si 0.89 19.92 29.61 -169.99 -5.03 14.89 16 11 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 12 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 13 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 14 C 0.17 3.57 5.51 -5.19 -0.03 3.54 16 15 C -0.04 -0.75 5.47 -104.35 -0.57 -1.32 16 16 C -0.12 -2.16 9.82 -39.31 -0.39 -2.55 16 17 C 0.09 1.41 11.18 -17.56 -0.20 1.22 16 18 N -0.45 -8.09 10.12 -9.81 -0.10 -8.19 16 19 C 0.07 1.23 6.75 -83.02 -0.56 0.67 16 20 C 0.53 9.08 7.95 34.76 0.28 9.35 16 21 O -0.51 -9.19 16.11 -19.21 -0.31 -9.50 16 22 O -0.34 -5.15 10.38 -40.43 -0.42 -5.57 16 23 C 0.03 0.35 10.56 101.05 1.07 1.42 16 24 C -0.10 -1.80 7.54 -39.04 -0.29 -2.09 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.05 1.02 6.16 -51.93 -0.32 0.70 16 31 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.05 1.00 8.08 -51.93 -0.42 0.58 16 33 H 0.04 0.71 7.83 -51.93 -0.41 0.30 16 34 H 0.26 6.52 8.31 -40.82 -0.34 6.18 16 35 H 0.12 2.76 5.27 -51.93 -0.27 2.48 16 36 H 0.04 0.86 7.82 -51.93 -0.41 0.46 16 37 H 0.14 2.57 8.06 -52.49 -0.42 2.14 16 38 H 0.16 2.04 8.06 -52.48 -0.42 1.62 16 39 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.14 2.47 7.61 -52.49 -0.40 2.07 16 LS Contribution 355.98 15.07 5.36 5.36 Total: -1.00 -28.04 355.98 -7.61 -35.64 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -6.43 Total: 2.89 kcal Atomic # 6 Polarization: 1.34 SS G_CDS: -0.88 Total: 0.46 kcal Atomic # 7 Polarization: -44.28 SS G_CDS: 0.10 Total: -44.18 kcal Atomic # 8 Polarization: -14.34 SS G_CDS: -0.73 Total: -15.07 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.03 Total: 14.89 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -28.04 -7.61 -35.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232773414.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.255 kcal (2) G-P(sol) polarization free energy of solvation -28.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds