Wall clock time and date at job start Tue Mar 31 2020 07:25:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46841 * 2 1 4 4 C 1.53004 * 109.46841 * 180.02562 * 3 2 1 5 5 N 1.46492 * 109.47051 * 179.97438 * 4 3 2 6 6 C 1.36937 * 120.00235 * 275.63714 * 5 4 3 7 7 H 1.08005 * 120.00206 * 33.99740 * 6 5 4 8 8 C 1.38816 * 120.00270 * 213.99851 * 6 5 4 9 9 N 1.31611 * 120.00005 * 22.95277 * 8 6 5 10 10 Si 1.86805 * 119.99927 * 202.95363 * 8 6 5 11 11 H 1.48498 * 109.47112 * 0.02562 * 10 8 6 12 12 H 1.48493 * 109.47056 * 120.00098 * 10 8 6 13 13 H 1.48495 * 109.46790 * 239.99996 * 10 8 6 14 14 C 1.46500 * 120.00265 * 95.64008 * 5 4 3 15 15 C 1.50709 * 109.46937 * 269.99804 * 14 5 4 16 16 C 1.38621 * 120.75432 * 269.97806 * 15 14 5 17 17 C 1.38582 * 119.35583 * 180.02562 * 16 15 14 18 18 N 1.31509 * 120.90867 * 0.02562 * 17 16 15 19 19 C 1.32755 * 121.63974 * 359.68025 * 18 17 16 20 20 C 1.48068 * 119.72510 * 180.29525 * 19 18 17 21 21 O 1.21427 * 119.99800 * 180.29416 * 20 19 18 22 22 O 1.34677 * 120.00339 * 0.28229 * 20 19 18 23 23 C 1.45200 * 117.00111 * 180.02562 * 22 20 19 24 24 C 1.38588 * 120.75088 * 89.99549 * 15 14 5 25 25 H 1.09000 * 109.47072 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47050 * 300.00054 * 1 2 3 27 27 H 1.09004 * 109.46917 * 60.00414 * 1 2 3 28 28 H 1.08998 * 109.47050 * 239.99946 * 2 1 3 29 29 H 1.08995 * 109.46844 * 119.99898 * 2 1 3 30 30 H 1.08998 * 109.47343 * 60.00125 * 3 2 1 31 31 H 1.09004 * 109.47027 * 299.99518 * 3 2 1 32 32 H 1.08998 * 109.47050 * 59.99946 * 4 3 2 33 33 H 1.08995 * 109.46844 * 299.99898 * 4 3 2 34 34 H 0.96996 * 120.00016 * 180.02562 * 9 8 6 35 35 H 1.08993 * 109.47650 * 150.00004 * 14 5 4 36 36 H 1.08997 * 109.47054 * 29.99174 * 14 5 4 37 37 H 1.07999 * 120.32356 * 359.97438 * 16 15 14 38 38 H 1.08004 * 119.54767 * 179.97438 * 17 16 15 39 39 H 1.08998 * 109.46711 * 180.02562 * 23 22 20 40 40 H 1.08998 * 109.46922 * 300.00052 * 23 22 20 41 41 H 1.08993 * 109.46594 * 60.00349 * 23 22 20 42 42 H 1.07999 * 120.47923 * 359.95627 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 7 4.0583 2.8237 -0.0013 6 6 4.1762 3.5078 -1.1817 7 1 3.4721 3.3305 -1.9812 8 6 5.2007 4.4291 -1.3507 9 7 6.2917 4.3415 -0.6198 10 14 5.0308 5.7932 -2.6155 11 1 3.7189 5.6724 -3.3007 12 1 5.1145 7.1111 -1.9364 13 1 6.1238 5.6809 -3.6144 14 6 4.4206 3.4732 1.2609 15 6 3.2117 4.1673 1.8338 16 6 2.9318 5.4859 1.5103 17 6 1.8126 6.0959 2.0542 18 7 1.0162 5.4414 2.8707 19 6 1.2451 4.1763 3.2015 20 6 0.3167 3.4780 4.1196 21 8 0.5243 2.3225 4.4297 22 8 -0.7576 4.1245 4.6111 23 6 -1.6239 3.3780 5.5059 24 6 2.3548 3.5019 2.6961 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8901 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.6767 1.9564 -0.8901 32 1 3.9330 0.9289 -0.8908 33 1 3.9337 0.9286 0.8891 34 1 7.0074 4.9855 -0.7376 35 1 5.2079 4.2049 1.0803 36 1 4.7769 2.7227 1.9665 37 1 3.5801 6.0327 0.8417 38 1 1.5918 7.1233 1.8046 39 1 -2.4485 4.0140 5.8276 40 1 -2.0196 2.5062 4.9850 41 1 -1.0539 3.0534 6.3764 42 1 2.5421 2.4739 2.9694 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001232773414.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:25:56 Heat of formation + Delta-G solvation = -55.409924 kcal Electronic energy + Delta-G solvation = -23953.714461 eV Core-core repulsion = 20512.729835 eV Total energy + Delta-G solvation = -3440.984626 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.87275 -40.65829 -38.17539 -37.58954 -35.73219 -34.11729 -32.92722 -32.55840 -29.64712 -28.81344 -27.94727 -25.75278 -25.42147 -23.79037 -22.75682 -21.79889 -21.70368 -19.18654 -18.52741 -18.16016 -17.49362 -17.24706 -16.89810 -16.59098 -16.33437 -15.79189 -15.41725 -15.33706 -14.91135 -14.85172 -14.64115 -14.07768 -13.98055 -13.67533 -13.34283 -13.13301 -13.09841 -12.91701 -12.80737 -12.44410 -12.30723 -12.07487 -12.03249 -11.93077 -11.83920 -11.83464 -11.66995 -11.39467 -10.65143 -10.57284 -10.42238 -10.22071 -8.65223 -7.86575 -5.43959 -0.49598 0.26281 1.32469 1.45411 1.52047 1.54432 1.60319 2.50489 2.79898 3.15481 3.22028 3.70829 3.81146 3.93138 3.99602 4.11485 4.14616 4.26779 4.28376 4.32972 4.37554 4.42601 4.52037 4.65942 4.68821 4.79387 4.84728 4.92959 5.01269 5.02714 5.04615 5.14382 5.15543 5.33888 5.41972 5.46015 5.58109 5.61669 5.67290 5.71999 6.42451 6.43973 6.83947 7.11711 7.79234 8.32000 9.10779 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.014270 B = 0.005613 C = 0.004506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.718336 B = 4987.138733 C = 6212.267717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.118 4.118 3 C -0.125 4.125 4 C 0.145 3.855 5 N -0.587 5.587 6 C -0.261 4.261 7 H 0.052 0.948 8 C -0.024 4.024 9 N -0.909 5.909 10 Si 0.945 3.055 11 H -0.274 1.274 12 H -0.278 1.278 13 H -0.294 1.294 14 C 0.173 3.827 15 C -0.047 4.047 16 C -0.125 4.125 17 C 0.097 3.903 18 N -0.458 5.458 19 C 0.062 3.938 20 C 0.529 3.471 21 O -0.520 6.520 22 O -0.345 6.345 23 C 0.025 3.975 24 C -0.098 4.098 25 H 0.069 0.931 26 H 0.041 0.959 27 H 0.049 0.951 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.044 0.956 31 H 0.037 0.963 32 H 0.038 0.962 33 H 0.047 0.953 34 H 0.256 0.744 35 H 0.093 0.907 36 H 0.044 0.956 37 H 0.135 0.865 38 H 0.195 0.805 39 H 0.135 0.865 40 H 0.065 0.935 41 H 0.067 0.933 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.547 -0.835 7.958 14.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.156 4.156 3 C -0.165 4.165 4 C 0.020 3.980 5 N -0.306 5.306 6 C -0.391 4.391 7 H 0.070 0.930 8 C -0.222 4.222 9 N -0.553 5.553 10 Si 0.773 3.227 11 H -0.199 1.199 12 H -0.203 1.203 13 H -0.222 1.222 14 C 0.047 3.953 15 C -0.058 4.058 16 C -0.146 4.146 17 C -0.063 4.063 18 N -0.170 5.170 19 C -0.073 4.073 20 C 0.373 3.627 21 O -0.409 6.409 22 O -0.259 6.259 23 C -0.068 4.068 24 C -0.120 4.120 25 H 0.088 0.912 26 H 0.061 0.939 27 H 0.068 0.932 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.063 0.937 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.110 0.890 36 H 0.063 0.937 37 H 0.153 0.847 38 H 0.212 0.788 39 H 0.153 0.847 40 H 0.084 0.916 41 H 0.086 0.914 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -12.096 -0.752 8.431 14.764 hybrid contribution 0.896 0.144 -1.040 1.381 sum -11.200 -0.608 7.391 13.433 Atomic orbital electron populations 1.21715 0.95500 1.01981 1.01037 1.21452 0.96157 0.95929 1.02033 1.22052 0.97640 0.96680 1.00146 1.21036 0.92543 0.85341 0.99106 1.43911 1.75698 1.09295 1.01721 1.19153 1.07252 1.19217 0.93483 0.93041 1.25582 0.93771 1.02883 0.99941 1.70066 1.05111 1.36409 1.43707 0.85576 0.77409 0.80396 0.79297 1.19904 1.20339 1.22153 1.20015 0.92374 0.97032 0.85921 1.21594 0.98438 0.94083 0.91701 1.22487 0.98392 0.95298 0.98445 1.23231 0.89851 1.01095 0.92080 1.67612 1.29658 1.07030 1.12743 1.19996 0.94936 0.92275 1.00070 1.20864 0.79954 0.83923 0.77910 1.90808 1.74024 1.17893 1.58184 1.86667 1.35101 1.45082 1.59097 1.23680 0.93206 0.97985 0.91899 1.21888 0.93054 1.00924 0.96098 0.91240 0.93933 0.93221 0.91718 0.91778 0.93702 0.94445 0.94381 0.93471 0.93477 0.88999 0.93720 0.84742 0.78841 0.84655 0.91629 0.91416 0.84364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.75 9.91 71.98 0.71 -3.03 16 2 C -0.12 -3.40 5.93 30.60 0.18 -3.22 16 3 C -0.13 -4.53 5.51 30.60 0.17 -4.36 16 4 C 0.15 5.86 5.72 86.38 0.49 6.35 16 5 N -0.59 -27.27 2.44 -706.35 -1.73 -29.00 16 6 C -0.26 -13.32 9.48 84.03 0.80 -12.52 16 7 H 0.05 2.71 7.93 -2.91 -0.02 2.69 16 8 C -0.02 -1.21 4.95 84.86 0.42 -0.79 16 9 N -0.91 -48.58 11.31 21.65 0.24 -48.34 16 10 Si 0.95 41.20 29.61 68.60 2.03 43.23 16 11 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 12 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 13 H -0.29 -13.07 7.11 99.48 0.71 -12.37 16 14 C 0.17 7.55 5.51 85.64 0.47 8.02 16 15 C -0.05 -1.82 5.47 -19.69 -0.11 -1.93 16 16 C -0.13 -4.47 9.82 22.44 0.22 -4.25 16 17 C 0.10 3.00 11.18 84.82 0.95 3.95 16 18 N -0.46 -15.43 10.12 -184.94 -1.87 -17.30 16 19 C 0.06 2.18 6.75 41.88 0.28 2.46 16 20 C 0.53 17.51 7.95 70.43 0.56 18.07 16 21 O -0.52 -18.34 16.11 20.07 0.32 -18.02 16 22 O -0.34 -9.79 10.38 -55.86 -0.58 -10.37 16 23 C 0.03 0.47 10.56 113.37 1.20 1.66 16 24 C -0.10 -3.56 7.54 22.62 0.17 -3.38 16 25 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.04 1.69 6.16 -2.39 -0.01 1.68 16 31 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.04 1.59 8.08 -2.39 -0.02 1.57 16 33 H 0.05 1.78 7.83 -2.39 -0.02 1.77 16 34 H 0.26 13.18 8.31 -92.71 -0.77 12.41 16 35 H 0.09 4.52 5.27 -2.39 -0.01 4.51 16 36 H 0.04 1.86 7.82 -2.39 -0.02 1.85 16 37 H 0.13 4.92 8.06 -2.91 -0.02 4.90 16 38 H 0.19 4.41 8.06 -2.91 -0.02 4.38 16 39 H 0.14 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.14 4.93 7.61 -2.91 -0.02 4.91 16 Total: -1.00 -59.82 355.98 5.94 -53.88 By element: Atomic # 1 Polarization: 17.89 SS G_CDS: 1.00 Total: 18.89 kcal Atomic # 6 Polarization: 0.51 SS G_CDS: 6.52 Total: 7.03 kcal Atomic # 7 Polarization: -91.28 SS G_CDS: -3.35 Total: -94.64 kcal Atomic # 8 Polarization: -28.14 SS G_CDS: -0.26 Total: -28.39 kcal Atomic # 14 Polarization: 41.20 SS G_CDS: 2.03 Total: 43.23 kcal Total: -59.82 5.94 -53.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232773414.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.532 kcal (2) G-P(sol) polarization free energy of solvation -59.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds