Wall clock time and date at job start Tue Mar 31 2020 07:25:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.46963 * 2 1 4 4 C 1.52998 * 109.47331 * 179.97438 * 3 2 1 5 5 N 1.46493 * 109.47397 * 180.02562 * 4 3 2 6 6 C 1.36945 * 119.99773 * 269.50439 * 5 4 3 7 7 H 1.07992 * 119.99820 * 325.95550 * 6 5 4 8 8 C 1.38815 * 119.99534 * 145.95699 * 6 5 4 9 9 N 1.31618 * 120.00451 * 336.74004 * 8 6 5 10 10 Si 1.86800 * 119.99708 * 156.74389 * 8 6 5 11 11 H 1.48502 * 109.47160 * 59.99671 * 10 8 6 12 12 H 1.48495 * 109.47100 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.47064 * 299.99536 * 10 8 6 14 14 C 1.46502 * 120.00154 * 89.50666 * 5 4 3 15 15 C 1.50692 * 109.47144 * 90.00092 * 14 5 4 16 16 C 1.38055 * 119.50261 * 94.73014 * 15 14 5 17 17 C 1.38787 * 119.21239 * 179.84088 * 16 15 14 18 18 C 1.38796 * 118.42062 * 0.46546 * 17 16 15 19 19 C 1.39152 * 119.28607 * 359.64191 * 18 17 16 20 20 N 1.31911 * 119.49959 * 274.99914 * 15 14 5 21 21 O 1.35983 * 120.49905 * 180.45500 * 19 18 17 22 22 C 1.43136 * 116.74779 * 342.40784 * 21 19 18 23 23 C 1.53471 * 108.33354 * 46.47679 * 22 21 19 24 24 O 1.35963 * 119.64507 * 179.48098 * 18 17 16 25 25 H 1.09001 * 109.46737 * 59.99942 * 1 2 3 26 26 H 1.09004 * 109.46878 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47281 * 299.99854 * 1 2 3 28 28 H 1.08996 * 109.47281 * 240.00146 * 2 1 3 29 29 H 1.09001 * 109.46737 * 120.00058 * 2 1 3 30 30 H 1.09005 * 109.47223 * 60.00082 * 3 2 1 31 31 H 1.08997 * 109.47468 * 300.00565 * 3 2 1 32 32 H 1.09007 * 109.47131 * 300.00346 * 4 3 2 33 33 H 1.09005 * 109.46736 * 59.99985 * 4 3 2 34 34 H 0.96998 * 120.00189 * 180.02562 * 9 8 6 35 35 H 1.09003 * 109.46695 * 209.99907 * 14 5 4 36 36 H 1.08996 * 109.47128 * 329.99819 * 14 5 4 37 37 H 1.08006 * 120.39195 * 0.05214 * 16 15 14 38 38 H 1.07992 * 120.78859 * 180.22475 * 17 16 15 39 39 H 1.09003 * 109.68729 * 286.76896 * 22 21 19 40 40 H 1.09000 * 109.72922 * 166.20711 * 22 21 19 41 41 H 1.09001 * 109.71719 * 180.62237 * 23 22 21 42 42 H 1.09000 * 109.71513 * 59.97717 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0583 2.8238 0.0013 6 6 4.2967 3.4662 -1.1844 7 1 4.6639 2.9112 -2.0349 8 6 4.0663 4.8308 -1.2929 9 7 3.2229 5.4230 -0.4741 10 14 4.9531 5.8266 -2.6010 11 1 4.6087 5.2966 -3.9448 12 1 4.5356 7.2486 -2.5084 13 1 6.4196 5.7261 -2.3902 14 6 4.2916 3.5177 1.2702 15 6 5.7111 3.2821 1.7180 16 6 6.6860 4.2072 1.4023 17 6 7.9907 3.9858 1.8206 18 6 8.2676 2.8296 2.5367 19 6 7.2358 1.9391 2.8174 20 7 6.0043 2.1923 2.4010 21 8 7.4776 0.8034 3.5251 22 6 8.8421 0.3818 3.6199 23 6 9.7005 1.6018 3.9806 24 8 9.5393 2.5825 2.9495 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6766 1.9564 -0.8899 32 1 3.9330 0.9288 0.8909 33 1 3.9337 0.9286 -0.8892 34 1 3.0617 6.3765 -0.5502 35 1 4.1258 4.5866 1.1356 36 1 3.6044 3.1356 2.0250 37 1 6.4356 5.0944 0.8395 38 1 8.7725 4.6944 1.5909 39 1 9.1677 -0.0264 2.6631 40 1 8.9394 -0.3779 4.3955 41 1 10.7479 1.3076 4.0479 42 1 9.3715 2.0137 4.9347 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233885493.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:25:42 Heat of formation + Delta-G solvation = -22.076337 kcal Electronic energy + Delta-G solvation = -23841.788679 eV Core-core repulsion = 20402.249506 eV Total energy + Delta-G solvation = -3439.539173 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.10670 -38.46125 -37.09636 -36.10846 -33.97230 -31.82158 -31.36713 -31.00568 -29.15806 -27.58765 -25.81862 -24.69216 -23.88514 -22.41643 -21.27249 -20.61982 -19.83936 -18.39258 -17.55806 -17.15630 -16.66631 -15.45681 -14.98919 -14.80761 -14.70512 -14.42304 -14.27664 -13.98334 -13.83609 -13.52363 -13.26442 -13.13537 -12.67312 -12.12241 -11.91509 -11.81704 -11.36285 -11.30652 -11.16798 -10.93324 -10.83246 -10.76684 -10.54286 -10.39261 -10.24107 -10.05136 -9.86707 -9.56240 -9.02468 -8.84239 -8.51643 -7.68822 -6.67569 -5.86059 -3.35910 1.61758 1.73893 2.95849 3.25002 3.34165 3.40799 3.43647 4.21022 4.25300 4.47312 4.73555 4.74181 4.84894 5.10843 5.22754 5.34614 5.40605 5.44376 5.54432 5.55247 5.74468 5.80227 5.82318 6.00897 6.16085 6.29259 6.30967 6.47020 6.51631 6.54222 6.57656 6.78399 6.79863 6.81322 7.00778 7.04835 7.17196 7.35622 7.52671 7.56383 7.78964 8.43396 8.63851 9.11821 9.75724 10.33915 11.15295 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.011956 B = 0.005766 C = 0.004130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2341.313175 B = 4854.544019 C = 6778.786961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.123 4.123 3 C -0.131 4.131 4 C 0.147 3.853 5 N -0.570 5.570 6 C -0.253 4.253 7 H 0.062 0.938 8 C 0.011 3.989 9 N -0.883 5.883 10 Si 0.891 3.109 11 H -0.281 1.281 12 H -0.289 1.289 13 H -0.282 1.282 14 C 0.187 3.813 15 C 0.150 3.850 16 C -0.148 4.148 17 C -0.077 4.077 18 C -0.022 4.022 19 C 0.252 3.748 20 N -0.467 5.467 21 O -0.300 6.300 22 C 0.028 3.972 23 C 0.021 3.979 24 O -0.310 6.310 25 H 0.051 0.949 26 H 0.043 0.957 27 H 0.050 0.950 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.062 0.938 32 H 0.043 0.957 33 H 0.038 0.962 34 H 0.257 0.743 35 H 0.119 0.881 36 H 0.046 0.954 37 H 0.143 0.857 38 H 0.136 0.864 39 H 0.076 0.924 40 H 0.121 0.879 41 H 0.118 0.882 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.105 -6.810 7.562 13.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.161 4.161 3 C -0.171 4.171 4 C 0.022 3.978 5 N -0.289 5.289 6 C -0.383 4.383 7 H 0.080 0.920 8 C -0.189 4.189 9 N -0.526 5.526 10 Si 0.720 3.280 11 H -0.207 1.207 12 H -0.215 1.215 13 H -0.208 1.208 14 C 0.059 3.941 15 C 0.010 3.990 16 C -0.169 4.169 17 C -0.103 4.103 18 C -0.069 4.069 19 C 0.073 3.927 20 N -0.188 5.188 21 O -0.210 6.210 22 C -0.049 4.049 23 C -0.055 4.055 24 O -0.224 6.224 25 H 0.070 0.930 26 H 0.062 0.938 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.062 0.938 33 H 0.057 0.943 34 H 0.067 0.933 35 H 0.136 0.864 36 H 0.064 0.936 37 H 0.161 0.839 38 H 0.154 0.846 39 H 0.094 0.906 40 H 0.139 0.861 41 H 0.136 0.864 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 7.444 -7.294 7.784 13.008 hybrid contribution 1.422 0.965 -0.814 1.902 sum 8.866 -6.329 6.970 12.932 Atomic orbital electron populations 1.21757 0.96835 1.00330 1.01633 1.21522 0.95015 0.98663 1.00916 1.22115 0.98941 0.93971 1.02067 1.20964 0.91416 0.86724 0.98742 1.43738 1.73165 1.10487 1.01468 1.19075 1.37384 0.91411 0.90438 0.92047 1.25045 0.97241 0.98478 0.98147 1.69950 1.32265 1.10574 1.39799 0.86544 0.80197 0.79246 0.81997 1.20686 1.21475 1.20791 1.20125 0.84849 1.02385 0.86752 1.22893 1.00850 0.86470 0.88827 1.21911 0.91611 1.02194 1.01202 1.20871 0.97504 0.94161 0.97798 1.19530 0.84578 0.97409 1.05386 1.19484 0.90455 0.86704 0.96057 1.66879 1.17537 1.21758 1.12617 1.86161 1.27178 1.39455 1.68243 1.23611 0.80491 0.96990 1.03819 1.23565 1.02222 0.88957 0.90775 1.86237 1.23801 1.58491 1.53869 0.93001 0.93787 0.93074 0.92833 0.92836 0.92911 0.91955 0.93812 0.94310 0.93267 0.86373 0.93596 0.83928 0.84574 0.90611 0.86067 0.86382 0.90762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.91 37.16 0.37 -1.75 16 2 C -0.12 -1.99 5.93 -26.73 -0.16 -2.15 16 3 C -0.13 -2.62 5.54 -26.73 -0.15 -2.77 16 4 C 0.15 3.23 5.67 -4.05 -0.02 3.20 16 5 N -0.57 -13.96 2.43 -174.61 -0.43 -14.39 16 6 C -0.25 -6.67 9.48 -15.05 -0.14 -6.81 16 7 H 0.06 1.65 7.93 -52.49 -0.42 1.23 16 8 C 0.01 0.29 4.94 -17.43 -0.09 0.20 16 9 N -0.88 -23.82 11.34 55.49 0.63 -23.19 16 10 Si 0.89 20.63 29.61 -169.99 -5.03 15.59 16 11 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 13 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 14 C 0.19 4.37 5.60 -5.20 -0.03 4.34 16 15 C 0.15 3.28 6.36 -82.63 -0.53 2.75 16 16 C -0.15 -2.97 9.71 -39.45 -0.38 -3.35 16 17 C -0.08 -1.38 10.10 -39.17 -0.40 -1.77 16 18 C -0.02 -0.39 6.50 -39.04 -0.25 -0.64 16 19 C 0.25 4.90 7.55 -16.95 -0.13 4.77 16 20 N -0.47 -10.12 10.29 -9.39 -0.10 -10.22 16 21 O -0.30 -5.09 10.51 -32.44 -0.34 -5.43 16 22 C 0.03 0.31 7.25 37.40 0.27 0.58 16 23 C 0.02 0.22 7.27 37.40 0.27 0.49 16 24 O -0.31 -4.70 10.43 -32.38 -0.34 -5.03 16 25 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 32 H 0.04 0.95 8.08 -51.93 -0.42 0.53 16 33 H 0.04 0.84 8.04 -51.93 -0.42 0.43 16 34 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 35 H 0.12 2.98 5.23 -51.93 -0.27 2.71 16 36 H 0.05 1.06 8.07 -51.93 -0.42 0.64 16 37 H 0.14 2.85 8.06 -52.48 -0.42 2.43 16 38 H 0.14 2.05 8.06 -52.49 -0.42 1.63 16 39 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.12 0.89 8.14 -51.93 -0.42 0.46 16 41 H 0.12 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 349.06 15.07 5.26 5.26 Total: -1.00 -29.83 349.06 -8.28 -38.11 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -6.57 Total: 2.22 kcal Atomic # 6 Polarization: -1.56 SS G_CDS: -1.36 Total: -2.92 kcal Atomic # 7 Polarization: -47.90 SS G_CDS: 0.11 Total: -47.79 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: -0.68 Total: -10.47 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.03 Total: 15.59 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -29.83 -8.28 -38.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233885493.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.035 kcal (2) G-P(sol) polarization free energy of solvation -29.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds