Wall clock time and date at job start Tue Mar 31 2020 07:25:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.46963 * 2 1 4 4 C 1.52998 * 109.47331 * 179.97438 * 3 2 1 5 5 N 1.46493 * 109.47397 * 180.02562 * 4 3 2 6 6 C 1.36945 * 119.99773 * 269.50439 * 5 4 3 7 7 H 1.07992 * 119.99820 * 325.95550 * 6 5 4 8 8 C 1.38815 * 119.99534 * 145.95699 * 6 5 4 9 9 N 1.31618 * 120.00451 * 336.74004 * 8 6 5 10 10 Si 1.86800 * 119.99708 * 156.74389 * 8 6 5 11 11 H 1.48502 * 109.47160 * 59.99671 * 10 8 6 12 12 H 1.48495 * 109.47100 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.47064 * 299.99536 * 10 8 6 14 14 C 1.46502 * 120.00154 * 89.50666 * 5 4 3 15 15 C 1.50692 * 109.47144 * 90.00092 * 14 5 4 16 16 C 1.38055 * 119.50261 * 94.73014 * 15 14 5 17 17 C 1.38787 * 119.21239 * 179.84088 * 16 15 14 18 18 C 1.38796 * 118.42062 * 0.46546 * 17 16 15 19 19 C 1.39152 * 119.28607 * 359.64191 * 18 17 16 20 20 N 1.31911 * 119.49959 * 274.99914 * 15 14 5 21 21 O 1.35983 * 120.49905 * 180.45500 * 19 18 17 22 22 C 1.43136 * 116.74779 * 342.40784 * 21 19 18 23 23 C 1.53471 * 108.33354 * 46.47679 * 22 21 19 24 24 O 1.35963 * 119.64507 * 179.48098 * 18 17 16 25 25 H 1.09001 * 109.46737 * 59.99942 * 1 2 3 26 26 H 1.09004 * 109.46878 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47281 * 299.99854 * 1 2 3 28 28 H 1.08996 * 109.47281 * 240.00146 * 2 1 3 29 29 H 1.09001 * 109.46737 * 120.00058 * 2 1 3 30 30 H 1.09005 * 109.47223 * 60.00082 * 3 2 1 31 31 H 1.08997 * 109.47468 * 300.00565 * 3 2 1 32 32 H 1.09007 * 109.47131 * 300.00346 * 4 3 2 33 33 H 1.09005 * 109.46736 * 59.99985 * 4 3 2 34 34 H 0.96998 * 120.00189 * 180.02562 * 9 8 6 35 35 H 1.09003 * 109.46695 * 209.99907 * 14 5 4 36 36 H 1.08996 * 109.47128 * 329.99819 * 14 5 4 37 37 H 1.08006 * 120.39195 * 0.05214 * 16 15 14 38 38 H 1.07992 * 120.78859 * 180.22475 * 17 16 15 39 39 H 1.09003 * 109.68729 * 286.76896 * 22 21 19 40 40 H 1.09000 * 109.72922 * 166.20711 * 22 21 19 41 41 H 1.09001 * 109.71719 * 180.62237 * 23 22 21 42 42 H 1.09000 * 109.71513 * 59.97717 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0583 2.8238 0.0013 6 6 4.2967 3.4662 -1.1844 7 1 4.6639 2.9112 -2.0349 8 6 4.0663 4.8308 -1.2929 9 7 3.2229 5.4230 -0.4741 10 14 4.9531 5.8266 -2.6010 11 1 4.6087 5.2966 -3.9448 12 1 4.5356 7.2486 -2.5084 13 1 6.4196 5.7261 -2.3902 14 6 4.2916 3.5177 1.2702 15 6 5.7111 3.2821 1.7180 16 6 6.6860 4.2072 1.4023 17 6 7.9907 3.9858 1.8206 18 6 8.2676 2.8296 2.5367 19 6 7.2358 1.9391 2.8174 20 7 6.0043 2.1923 2.4010 21 8 7.4776 0.8034 3.5251 22 6 8.8421 0.3818 3.6199 23 6 9.7005 1.6018 3.9806 24 8 9.5393 2.5825 2.9495 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6766 1.9564 -0.8899 32 1 3.9330 0.9288 0.8909 33 1 3.9337 0.9286 -0.8892 34 1 3.0617 6.3765 -0.5502 35 1 4.1258 4.5866 1.1356 36 1 3.6044 3.1356 2.0250 37 1 6.4356 5.0944 0.8395 38 1 8.7725 4.6944 1.5909 39 1 9.1677 -0.0264 2.6631 40 1 8.9394 -0.3779 4.3955 41 1 10.7479 1.3076 4.0479 42 1 9.3715 2.0137 4.9347 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233885493.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:25:41 Heat of formation + Delta-G solvation = -40.607272 kcal Electronic energy + Delta-G solvation = -23842.592241 eV Core-core repulsion = 20402.249506 eV Total energy + Delta-G solvation = -3440.342735 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.40124 -39.90025 -38.31918 -37.83945 -35.54568 -33.44642 -32.98426 -32.39443 -30.45788 -29.17369 -27.50318 -25.93623 -25.55547 -23.88491 -22.73132 -22.04168 -21.49755 -19.68180 -18.83999 -18.75076 -18.22392 -16.77848 -16.67827 -16.31527 -16.13831 -15.78125 -15.52722 -15.42026 -15.35173 -15.23261 -14.63324 -14.47146 -14.07437 -13.70327 -13.43324 -13.29281 -13.09280 -12.74172 -12.60234 -12.40798 -12.26412 -12.21788 -12.08234 -12.00557 -11.85833 -11.78609 -11.54668 -11.25751 -10.58635 -10.42659 -10.27110 -9.12816 -8.62185 -7.84143 -5.38814 0.13123 0.26290 1.48769 1.51832 1.58554 1.75040 2.12382 2.52246 2.74694 3.16156 3.24356 3.58694 3.74491 3.86262 3.95581 4.02533 4.10617 4.18025 4.26404 4.31082 4.44839 4.52761 4.57882 4.59446 4.62753 4.73638 4.89778 4.95836 5.03813 5.07567 5.09431 5.19254 5.23365 5.39202 5.48588 5.53366 5.61020 5.63703 5.69960 5.76942 6.23848 6.45500 7.10503 7.14125 7.81988 8.38094 9.15172 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.011956 B = 0.005766 C = 0.004130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2341.313175 B = 4854.544019 C = 6778.786961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.116 4.116 3 C -0.118 4.118 4 C 0.149 3.851 5 N -0.584 5.584 6 C -0.267 4.267 7 H 0.051 0.949 8 C -0.023 4.023 9 N -0.908 5.908 10 Si 0.948 3.052 11 H -0.281 1.281 12 H -0.288 1.288 13 H -0.276 1.276 14 C 0.197 3.803 15 C 0.130 3.870 16 C -0.158 4.158 17 C -0.074 4.074 18 C -0.008 4.008 19 C 0.244 3.756 20 N -0.494 5.494 21 O -0.319 6.319 22 C 0.017 3.983 23 C 0.015 3.985 24 O -0.314 6.314 25 H 0.047 0.953 26 H 0.070 0.930 27 H 0.049 0.951 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.036 0.964 31 H 0.036 0.964 32 H 0.042 0.958 33 H 0.036 0.964 34 H 0.256 0.744 35 H 0.099 0.901 36 H 0.035 0.965 37 H 0.136 0.864 38 H 0.167 0.833 39 H 0.079 0.921 40 H 0.164 0.836 41 H 0.165 0.835 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.349 -7.994 8.272 15.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.154 4.154 3 C -0.158 4.158 4 C 0.024 3.976 5 N -0.303 5.303 6 C -0.397 4.397 7 H 0.069 0.931 8 C -0.221 4.221 9 N -0.552 5.552 10 Si 0.775 3.225 11 H -0.207 1.207 12 H -0.214 1.214 13 H -0.202 1.202 14 C 0.069 3.931 15 C -0.009 4.009 16 C -0.179 4.179 17 C -0.100 4.100 18 C -0.056 4.056 19 C 0.064 3.936 20 N -0.215 5.215 21 O -0.230 6.230 22 C -0.057 4.057 23 C -0.060 4.060 24 O -0.228 6.228 25 H 0.066 0.934 26 H 0.089 0.911 27 H 0.068 0.932 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.061 0.939 33 H 0.054 0.946 34 H 0.065 0.935 35 H 0.116 0.884 36 H 0.053 0.947 37 H 0.154 0.846 38 H 0.185 0.815 39 H 0.097 0.903 40 H 0.182 0.818 41 H 0.182 0.818 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 9.712 -8.503 8.514 15.463 hybrid contribution 0.888 1.187 -0.878 1.724 sum 10.600 -7.316 7.636 14.973 Atomic orbital electron populations 1.21725 0.95111 1.01985 1.01404 1.21460 0.96504 0.95699 1.01754 1.21930 0.97570 0.96386 0.99905 1.20988 0.92523 0.85732 0.98398 1.43884 1.74022 1.11085 1.01340 1.19153 1.37609 0.91958 0.90930 0.93090 1.25595 0.97616 0.98972 0.99962 1.70059 1.33324 1.10529 1.41271 0.85664 0.79292 0.77779 0.79728 1.20680 1.21382 1.20193 1.19819 0.86202 1.00905 0.86144 1.22433 1.00135 0.87711 0.90657 1.21838 0.92549 1.01778 1.01736 1.21126 0.97133 0.94785 0.96908 1.19534 0.85437 0.96564 1.04099 1.19647 0.90092 0.87853 0.96011 1.66714 1.19450 1.21930 1.13438 1.86146 1.30898 1.38435 1.67490 1.24124 0.77835 0.98165 1.05625 1.24037 1.04841 0.87467 0.89640 1.86238 1.21710 1.59784 1.55059 0.93411 0.91146 0.93205 0.92015 0.91907 0.94489 0.94533 0.93930 0.94587 0.93455 0.88353 0.94704 0.84582 0.81533 0.90301 0.81814 0.81798 0.89923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.98 9.91 71.98 0.71 -3.27 16 2 C -0.12 -3.70 5.93 30.60 0.18 -3.52 16 3 C -0.12 -4.88 5.54 30.59 0.17 -4.72 16 4 C 0.15 6.76 5.67 86.38 0.49 7.25 16 5 N -0.58 -29.83 2.43 -706.35 -1.72 -31.55 16 6 C -0.27 -14.49 9.48 84.03 0.80 -13.70 16 7 H 0.05 2.83 7.93 -2.91 -0.02 2.80 16 8 C -0.02 -1.25 4.94 84.86 0.42 -0.83 16 9 N -0.91 -50.61 11.34 21.65 0.25 -50.36 16 10 Si 0.95 43.01 29.61 68.60 2.03 45.04 16 11 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 12 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 13 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 14 C 0.20 9.70 5.60 85.63 0.48 10.18 16 15 C 0.13 5.87 6.36 42.50 0.27 6.14 16 16 C -0.16 -6.42 9.71 22.36 0.22 -6.21 16 17 C -0.07 -2.53 10.10 22.53 0.23 -2.30 16 18 C -0.01 -0.29 6.50 22.62 0.15 -0.14 16 19 C 0.24 9.29 7.55 84.82 0.64 9.93 16 20 N -0.49 -21.78 10.29 -296.23 -3.05 -24.83 16 21 O -0.32 -10.30 10.51 -81.17 -0.85 -11.15 16 22 C 0.02 0.33 7.25 72.14 0.52 0.85 16 23 C 0.01 0.25 7.27 72.14 0.52 0.77 16 24 O -0.31 -8.47 10.43 -80.93 -0.84 -9.32 16 25 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.04 1.61 8.14 -2.38 -0.02 1.59 16 31 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.04 1.91 8.08 -2.38 -0.02 1.89 16 33 H 0.04 1.62 8.04 -2.38 -0.02 1.60 16 34 H 0.26 13.75 8.31 -92.71 -0.77 12.98 16 35 H 0.10 5.25 5.23 -2.39 -0.01 5.24 16 36 H 0.03 1.72 8.07 -2.39 -0.02 1.70 16 37 H 0.14 5.60 8.06 -2.91 -0.02 5.58 16 38 H 0.17 4.59 8.06 -2.91 -0.02 4.57 16 39 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.16 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.16 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -66.82 349.06 2.61 -64.22 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: 1.00 Total: 17.51 kcal Atomic # 6 Polarization: -5.36 SS G_CDS: 5.80 Total: 0.44 kcal Atomic # 7 Polarization: -102.22 SS G_CDS: -4.52 Total: -106.74 kcal Atomic # 8 Polarization: -18.78 SS G_CDS: -1.70 Total: -20.47 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Total: -66.82 2.61 -64.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233885493.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.610 kcal (2) G-P(sol) polarization free energy of solvation -66.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds