Wall clock time and date at job start Tue Mar 31 2020 07:02:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53008 * 109.46849 * 2 1 4 4 C 1.52996 * 109.47460 * 239.99823 * 2 1 3 5 5 C 1.50709 * 109.47079 * 59.99964 * 4 2 1 6 6 H 1.08001 * 119.99331 * 0.02562 * 5 4 2 7 7 C 1.37869 * 120.00242 * 179.97438 * 5 4 2 8 8 N 1.31520 * 120.00070 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00390 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47408 * 89.99806 * 9 7 5 11 11 H 1.48501 * 109.47447 * 210.00334 * 9 7 5 12 12 H 1.48505 * 109.46796 * 330.00178 * 9 7 5 13 13 C 1.52998 * 109.47254 * 119.99772 * 2 1 3 14 14 N 1.46506 * 109.47237 * 300.00146 * 13 2 1 15 15 C 1.34773 * 119.99969 * 179.72043 * 14 13 2 16 16 O 1.21609 * 120.00089 * 0.02562 * 15 14 13 17 17 C 1.47396 * 119.99887 * 180.02562 * 15 14 13 18 18 C 1.47110 * 128.56542 * 359.67727 * 17 15 14 19 19 N 1.30014 * 105.32878 * 179.86987 * 18 17 15 20 20 O 1.20665 * 112.30465 * 0.42589 * 19 18 17 21 21 C 1.33491 * 113.15101 * 359.71284 * 20 19 18 22 22 C 1.50701 * 126.82592 * 179.97438 * 21 20 19 23 23 C 1.53000 * 117.50266 * 8.77335 * 22 21 20 24 24 C 1.52995 * 117.50252 * 300.11115 * 22 21 20 25 25 H 1.09002 * 109.47712 * 299.99691 * 1 2 3 26 26 H 1.08995 * 109.47426 * 60.00418 * 1 2 3 27 27 H 1.09002 * 109.47145 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46786 * 179.97438 * 3 2 1 29 29 H 1.08995 * 109.46766 * 299.99987 * 3 2 1 30 30 H 1.09002 * 109.47164 * 59.99980 * 3 2 1 31 31 H 1.09000 * 109.47441 * 179.97438 * 4 2 1 32 32 H 1.08994 * 109.47235 * 299.99931 * 4 2 1 33 33 H 0.96994 * 120.00439 * 179.97438 * 8 7 5 34 34 H 1.09001 * 109.47671 * 180.02562 * 13 2 1 35 35 H 1.08998 * 109.47454 * 60.00483 * 13 2 1 36 36 H 0.97005 * 119.99811 * 0.02562 * 14 13 2 37 37 H 1.07997 * 127.33259 * 359.97438 * 18 17 15 38 38 H 1.09002 * 115.55031 * 154.43777 * 22 21 20 39 39 H 1.09006 * 117.49577 * 359.97438 * 23 22 21 40 40 H 1.08999 * 117.50523 * 145.01825 * 23 22 21 41 41 H 1.08999 * 117.50121 * 214.98176 * 24 22 21 42 42 H 1.09004 * 117.49278 * 359.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5377 -0.0109 -2.4797 6 1 0.9171 0.8675 -2.3806 7 6 1.8712 -0.4816 -3.7319 8 7 2.6274 -1.5509 -3.8526 9 14 1.2480 0.3985 -5.2572 10 1 2.2253 1.4410 -5.6613 11 1 1.0838 -0.5808 -6.3614 12 1 -0.0607 1.0350 -4.9614 13 6 2.0400 -0.7212 1.2492 14 7 1.5516 -0.0305 2.4455 15 6 1.8726 -0.4943 3.6695 16 8 2.5679 -1.4857 3.7811 17 6 1.3808 0.2003 4.8730 18 6 0.5422 1.4060 4.9577 19 7 0.3788 1.6223 6.2293 20 8 0.9493 0.8055 6.9098 21 6 1.5974 -0.1150 6.1923 22 6 2.4063 -1.2700 6.7240 23 6 2.3418 -1.5448 8.2277 24 6 3.6072 -0.9414 7.6131 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1299 1.4426 0.0005 29 1 1.6765 1.9563 -0.8900 30 1 1.6765 1.9564 0.8900 31 1 3.1300 -0.7209 -1.2494 32 1 1.6767 -1.7489 -1.2492 33 1 2.8618 -1.8823 -4.7335 34 1 3.1300 -0.7208 1.2495 35 1 1.6767 -1.7489 1.2493 36 1 0.9936 0.7579 2.3564 37 1 0.1454 1.9867 4.1382 38 1 2.4927 -2.1291 6.0587 39 1 1.7145 -0.8899 8.8326 40 1 2.3862 -2.5845 8.5518 41 1 4.4836 -1.5845 7.5331 42 1 3.8124 0.1103 7.8132 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324768382.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:46 Heat of formation + Delta-G solvation = 31.937748 kcal Electronic energy + Delta-G solvation = -23132.102272 eV Core-core repulsion = 19694.905325 eV Total energy + Delta-G solvation = -3437.196947 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -45.12863 -39.58469 -37.71850 -37.08078 -34.07839 -33.48232 -32.10079 -31.74532 -27.30569 -26.69217 -26.56187 -24.61880 -24.23793 -22.84136 -22.67710 -21.15183 -20.37672 -18.58572 -17.92451 -17.69584 -16.79243 -16.38822 -15.80283 -15.54365 -15.07440 -14.73528 -14.53248 -14.03847 -13.63355 -13.61449 -13.15689 -12.80123 -12.58442 -12.23520 -12.09057 -11.95417 -11.83420 -11.46121 -11.21236 -11.05124 -10.88354 -10.80197 -10.68080 -10.60581 -10.45631 -10.29211 -10.05604 -9.92606 -9.44879 -9.23718 -8.96678 -8.80713 -8.38599 -6.02692 -4.04162 0.84650 1.58596 2.51260 3.18894 3.29022 3.29706 3.36404 3.38189 3.50218 3.95790 4.05397 4.28045 4.42855 4.48423 4.57021 4.87351 5.04912 5.26505 5.28622 5.32867 5.44595 5.51311 5.56756 5.56782 5.69946 5.72936 5.79958 6.11091 6.16281 6.22445 6.33399 6.47203 6.58373 6.68665 7.00832 7.02932 7.07415 7.58958 7.61647 7.72399 7.93026 7.95713 8.26235 8.37644 9.00547 9.59222 11.08761 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.033730 B = 0.002977 C = 0.002808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.924823 B = 9404.151958 C = 9968.595375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.073 4.073 3 C -0.128 4.128 4 C 0.036 3.964 5 C -0.512 4.512 6 H 0.059 0.941 7 C 0.056 3.944 8 N -0.894 5.894 9 Si 0.889 3.111 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.129 3.871 14 N -0.710 5.710 15 C 0.591 3.409 16 O -0.537 6.537 17 C -0.252 4.252 18 C 0.023 3.977 19 N -0.355 5.355 20 O 0.090 5.910 21 C 0.075 3.925 22 C -0.089 4.089 23 C -0.168 4.168 24 C -0.155 4.155 25 H 0.028 0.972 26 H 0.068 0.932 27 H 0.048 0.952 28 H 0.048 0.952 29 H 0.068 0.932 30 H 0.028 0.972 31 H 0.019 0.981 32 H 0.019 0.981 33 H 0.260 0.740 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.398 0.602 37 H 0.202 0.798 38 H 0.154 0.846 39 H 0.103 0.897 40 H 0.108 0.892 41 H 0.110 0.890 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.989 3.418 21.294 21.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.073 4.073 3 C -0.185 4.185 4 C -0.001 4.001 5 C -0.550 4.550 6 H 0.077 0.923 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.717 3.283 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.199 1.199 13 C 0.006 3.994 14 N -0.361 5.361 15 C 0.377 3.623 16 O -0.415 6.415 17 C -0.260 4.260 18 C -0.159 4.159 19 N -0.060 5.060 20 O 0.030 5.970 21 C 0.012 3.988 22 C -0.108 4.108 23 C -0.205 4.205 24 C -0.193 4.193 25 H 0.047 0.953 26 H 0.087 0.913 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.087 0.913 30 H 0.047 0.953 31 H 0.037 0.963 32 H 0.037 0.963 33 H 0.070 0.930 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.234 0.766 37 H 0.218 0.782 38 H 0.172 0.828 39 H 0.122 0.878 40 H 0.127 0.873 41 H 0.128 0.872 42 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -2.061 3.506 21.941 22.315 hybrid contribution -0.364 0.511 -1.817 1.922 sum -2.425 4.018 20.124 20.664 Atomic orbital electron populations 1.21770 0.95224 1.01260 1.00252 1.20921 0.95515 0.95896 0.95005 1.21773 1.00630 0.95849 1.00245 1.19088 0.96386 0.95236 0.89392 1.21175 1.31253 1.12081 0.90506 0.92254 1.25008 0.95305 0.95060 0.99092 1.69959 1.36938 1.22980 1.23487 0.86650 0.79190 0.79418 0.83062 1.20767 1.21322 1.19945 1.21703 0.99107 0.96093 0.82465 1.46003 1.52891 1.31754 1.05464 1.16778 0.80166 0.83464 0.81909 1.90778 1.38437 1.25807 1.86520 1.22143 1.08601 1.00626 0.94589 1.26405 0.98584 0.96245 0.94697 1.73660 1.15284 1.11262 1.05818 1.84536 1.48633 1.28959 1.34868 1.23748 0.93813 0.91624 0.89662 1.20750 0.99776 0.95293 0.94936 1.23139 1.00972 1.03156 0.93195 1.23104 0.92313 1.02773 1.01061 0.95329 0.91325 0.93270 0.93268 0.91332 0.95329 0.96289 0.96279 0.93008 0.91466 0.91469 0.76635 0.78166 0.82827 0.87821 0.87348 0.87152 0.88230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.16 8.05 37.15 0.30 -1.86 16 2 C -0.07 -1.33 0.54 -154.51 -0.08 -1.41 16 3 C -0.13 -2.15 8.05 37.16 0.30 -1.85 16 4 C 0.04 0.87 4.04 -27.88 -0.11 0.76 16 5 C -0.51 -13.32 7.65 -34.44 -0.26 -13.59 16 6 H 0.06 1.48 5.68 -52.49 -0.30 1.19 16 7 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 8 N -0.89 -26.08 13.29 55.43 0.74 -25.34 16 9 Si 0.89 20.94 29.54 -169.99 -5.02 15.92 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 13 C 0.13 2.18 4.56 -4.04 -0.02 2.16 16 14 N -0.71 -9.98 4.96 -61.39 -0.30 -10.28 16 15 C 0.59 8.75 7.81 -12.53 -0.10 8.66 16 16 O -0.54 -9.45 15.33 5.27 0.08 -9.36 16 17 C -0.25 -3.16 6.47 -102.89 -0.67 -3.82 16 18 C 0.02 0.25 11.95 -14.72 -0.18 0.08 16 19 N -0.35 -4.24 12.01 31.81 0.38 -3.86 16 20 O 0.09 1.03 10.86 18.66 0.20 1.23 16 21 C 0.08 0.87 7.00 -34.63 -0.24 0.63 16 22 C -0.09 -0.87 5.74 -91.77 -0.53 -1.39 16 23 C -0.17 -1.16 10.19 -26.69 -0.27 -1.44 16 24 C -0.16 -1.18 10.24 -26.70 -0.27 -1.45 16 25 H 0.03 0.39 6.86 -51.93 -0.36 0.03 16 26 H 0.07 1.26 6.62 -51.93 -0.34 0.91 16 27 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.07 1.25 6.62 -51.93 -0.34 0.91 16 30 H 0.03 0.38 6.86 -51.93 -0.36 0.03 16 31 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 34 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 35 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 36 H 0.40 4.69 5.53 -40.82 -0.23 4.47 16 37 H 0.20 1.51 7.88 -52.49 -0.41 1.10 16 38 H 0.15 1.70 6.96 -51.93 -0.36 1.33 16 39 H 0.10 0.68 8.02 -51.93 -0.42 0.26 16 40 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 347.65 15.07 5.24 5.24 Total: -1.00 -30.63 347.65 -6.97 -37.60 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -6.05 Total: 1.95 kcal Atomic # 6 Polarization: -10.86 SS G_CDS: -2.23 Total: -13.09 kcal Atomic # 7 Polarization: -40.30 SS G_CDS: 0.81 Total: -39.48 kcal Atomic # 8 Polarization: -8.42 SS G_CDS: 0.28 Total: -8.13 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.63 -6.97 -37.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324768382.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.537 kcal (2) G-P(sol) polarization free energy of solvation -30.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds