Wall clock time and date at job start Tue Mar 31 2020 07:02:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53008 * 109.46849 * 2 1 4 4 C 1.52996 * 109.47460 * 239.99823 * 2 1 3 5 5 C 1.50709 * 109.47079 * 59.99964 * 4 2 1 6 6 H 1.08001 * 119.99331 * 0.02562 * 5 4 2 7 7 C 1.37869 * 120.00242 * 179.97438 * 5 4 2 8 8 N 1.31520 * 120.00070 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00390 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47408 * 89.99806 * 9 7 5 11 11 H 1.48501 * 109.47447 * 210.00334 * 9 7 5 12 12 H 1.48505 * 109.46796 * 330.00178 * 9 7 5 13 13 C 1.52998 * 109.47254 * 119.99772 * 2 1 3 14 14 N 1.46506 * 109.47237 * 300.00146 * 13 2 1 15 15 C 1.34773 * 119.99969 * 179.72043 * 14 13 2 16 16 O 1.21609 * 120.00089 * 0.02562 * 15 14 13 17 17 C 1.47396 * 119.99887 * 180.02562 * 15 14 13 18 18 C 1.47110 * 128.56542 * 359.67727 * 17 15 14 19 19 N 1.30014 * 105.32878 * 179.86987 * 18 17 15 20 20 O 1.20665 * 112.30465 * 0.42589 * 19 18 17 21 21 C 1.33491 * 113.15101 * 359.71284 * 20 19 18 22 22 C 1.50701 * 126.82592 * 179.97438 * 21 20 19 23 23 C 1.53000 * 117.50266 * 8.77335 * 22 21 20 24 24 C 1.52995 * 117.50252 * 300.11115 * 22 21 20 25 25 H 1.09002 * 109.47712 * 299.99691 * 1 2 3 26 26 H 1.08995 * 109.47426 * 60.00418 * 1 2 3 27 27 H 1.09002 * 109.47145 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46786 * 179.97438 * 3 2 1 29 29 H 1.08995 * 109.46766 * 299.99987 * 3 2 1 30 30 H 1.09002 * 109.47164 * 59.99980 * 3 2 1 31 31 H 1.09000 * 109.47441 * 179.97438 * 4 2 1 32 32 H 1.08994 * 109.47235 * 299.99931 * 4 2 1 33 33 H 0.96994 * 120.00439 * 179.97438 * 8 7 5 34 34 H 1.09001 * 109.47671 * 180.02562 * 13 2 1 35 35 H 1.08998 * 109.47454 * 60.00483 * 13 2 1 36 36 H 0.97005 * 119.99811 * 0.02562 * 14 13 2 37 37 H 1.07997 * 127.33259 * 359.97438 * 18 17 15 38 38 H 1.09002 * 115.55031 * 154.43777 * 22 21 20 39 39 H 1.09006 * 117.49577 * 359.97438 * 23 22 21 40 40 H 1.08999 * 117.50523 * 145.01825 * 23 22 21 41 41 H 1.08999 * 117.50121 * 214.98176 * 24 22 21 42 42 H 1.09004 * 117.49278 * 359.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5377 -0.0109 -2.4797 6 1 0.9171 0.8675 -2.3806 7 6 1.8712 -0.4816 -3.7319 8 7 2.6274 -1.5509 -3.8526 9 14 1.2480 0.3985 -5.2572 10 1 2.2253 1.4410 -5.6613 11 1 1.0838 -0.5808 -6.3614 12 1 -0.0607 1.0350 -4.9614 13 6 2.0400 -0.7212 1.2492 14 7 1.5516 -0.0305 2.4455 15 6 1.8726 -0.4943 3.6695 16 8 2.5679 -1.4857 3.7811 17 6 1.3808 0.2003 4.8730 18 6 0.5422 1.4060 4.9577 19 7 0.3788 1.6223 6.2293 20 8 0.9493 0.8055 6.9098 21 6 1.5974 -0.1150 6.1923 22 6 2.4063 -1.2700 6.7240 23 6 2.3418 -1.5448 8.2277 24 6 3.6072 -0.9414 7.6131 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1299 1.4426 0.0005 29 1 1.6765 1.9563 -0.8900 30 1 1.6765 1.9564 0.8900 31 1 3.1300 -0.7209 -1.2494 32 1 1.6767 -1.7489 -1.2492 33 1 2.8618 -1.8823 -4.7335 34 1 3.1300 -0.7208 1.2495 35 1 1.6767 -1.7489 1.2493 36 1 0.9936 0.7579 2.3564 37 1 0.1454 1.9867 4.1382 38 1 2.4927 -2.1291 6.0587 39 1 1.7145 -0.8899 8.8326 40 1 2.3862 -2.5845 8.5518 41 1 4.4836 -1.5845 7.5331 42 1 3.8124 0.1103 7.8132 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324768382.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:45 Heat of formation + Delta-G solvation = 14.036110 kcal Electronic energy + Delta-G solvation = -23132.878545 eV Core-core repulsion = 19694.905325 eV Total energy + Delta-G solvation = -3437.973220 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -45.99616 -40.83409 -38.73097 -38.22559 -35.34464 -34.78191 -33.81947 -32.63272 -29.16989 -28.04695 -27.95085 -25.86000 -25.11922 -24.40069 -23.31275 -22.12739 -21.46419 -19.92354 -18.88344 -18.76539 -18.35265 -17.66895 -16.95491 -16.56263 -16.37710 -16.35012 -15.70004 -15.10682 -14.93545 -14.81781 -14.58367 -14.26725 -13.92753 -13.78581 -13.35525 -12.87288 -12.73642 -12.67828 -12.58810 -12.45775 -12.32392 -12.22082 -12.18261 -11.97466 -11.53510 -11.50783 -11.49331 -11.27524 -10.93981 -10.84071 -10.50133 -10.36920 -10.02544 -8.13106 -6.20537 -0.07677 0.72380 1.43292 1.43641 1.53686 1.60821 2.10109 2.17235 2.45592 2.82258 3.19799 3.21283 3.21705 3.40924 3.78258 3.92989 3.97576 4.06547 4.09265 4.19816 4.23215 4.52344 4.68807 4.73071 4.73451 4.75213 4.81778 4.94893 4.97200 5.07244 5.12315 5.13848 5.19706 5.36089 5.45976 5.52354 5.54621 5.58206 5.81751 5.91395 6.31246 6.47898 6.94860 7.05952 7.12892 7.47265 8.99404 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.033730 B = 0.002977 C = 0.002808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.924823 B = 9404.151958 C = 9968.595375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.065 4.065 3 C -0.123 4.123 4 C 0.040 3.960 5 C -0.513 4.513 6 H 0.073 0.927 7 C -0.005 4.005 8 N -0.938 5.938 9 Si 0.956 3.044 10 H -0.276 1.276 11 H -0.291 1.291 12 H -0.260 1.260 13 C 0.143 3.857 14 N -0.698 5.698 15 C 0.594 3.406 16 O -0.571 6.571 17 C -0.278 4.278 18 C 0.040 3.960 19 N -0.371 5.371 20 O 0.087 5.913 21 C 0.087 3.913 22 C -0.118 4.118 23 C -0.146 4.146 24 C -0.149 4.149 25 H 0.070 0.930 26 H 0.056 0.944 27 H 0.037 0.963 28 H 0.037 0.963 29 H 0.056 0.944 30 H 0.070 0.930 31 H -0.013 1.013 32 H -0.013 1.013 33 H 0.259 0.741 34 H 0.051 0.949 35 H 0.051 0.949 36 H 0.413 0.587 37 H 0.235 0.765 38 H 0.137 0.863 39 H 0.111 0.889 40 H 0.126 0.874 41 H 0.120 0.880 42 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.340 5.463 22.767 23.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.065 4.065 3 C -0.181 4.181 4 C 0.002 3.998 5 C -0.551 4.551 6 H 0.091 0.909 7 C -0.201 4.201 8 N -0.580 5.580 9 Si 0.782 3.218 10 H -0.202 1.202 11 H -0.217 1.217 12 H -0.184 1.184 13 C 0.019 3.981 14 N -0.350 5.350 15 C 0.381 3.619 16 O -0.452 6.452 17 C -0.285 4.285 18 C -0.143 4.143 19 N -0.079 5.079 20 O 0.030 5.970 21 C 0.023 3.977 22 C -0.138 4.138 23 C -0.183 4.183 24 C -0.186 4.186 25 H 0.089 0.911 26 H 0.075 0.925 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.075 0.925 30 H 0.089 0.911 31 H 0.006 0.994 32 H 0.006 0.994 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.251 0.749 37 H 0.251 0.749 38 H 0.155 0.845 39 H 0.129 0.871 40 H 0.144 0.856 41 H 0.139 0.861 42 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -3.434 5.583 23.447 24.346 hybrid contribution 0.091 -0.174 -2.195 2.204 sum -3.342 5.409 21.252 22.183 Atomic orbital electron populations 1.21712 0.93582 1.01072 1.01687 1.20713 0.96709 0.96332 0.92749 1.21716 1.00016 0.94618 1.01707 1.18967 0.94356 0.94237 0.92196 1.21601 1.30358 1.12039 0.91077 0.90915 1.25923 0.95718 0.95848 1.02657 1.70114 1.38846 1.24948 1.24064 0.85572 0.79187 0.78121 0.78922 1.20222 1.21663 1.18360 1.21290 0.98113 0.95489 0.83213 1.45722 1.52964 1.31957 1.04362 1.17016 0.79408 0.82968 0.82465 1.90765 1.40006 1.27429 1.87020 1.21926 1.10657 1.02046 0.93901 1.26874 0.97054 0.95206 0.95117 1.73654 1.16111 1.11813 1.06327 1.84539 1.48692 1.28963 1.34765 1.24068 0.92648 0.91377 0.89634 1.20772 1.01811 0.94708 0.96464 1.23265 1.00031 1.04326 0.90687 1.23221 0.92444 1.03340 0.99594 0.91138 0.92542 0.94349 0.94338 0.92505 0.91134 0.99448 0.99441 0.93200 0.93013 0.93030 0.74912 0.74913 0.84536 0.87090 0.85612 0.86143 0.87909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.95 8.05 71.98 0.58 -3.37 16 2 C -0.06 -2.33 0.54 -52.18 -0.03 -2.36 16 3 C -0.12 -3.94 8.05 71.98 0.58 -3.36 16 4 C 0.04 1.98 4.04 29.85 0.12 2.10 16 5 C -0.51 -26.92 7.65 25.60 0.20 -26.73 16 6 H 0.07 3.56 5.68 -2.91 -0.02 3.55 16 7 C 0.00 -0.26 5.46 84.65 0.46 0.21 16 8 N -0.94 -56.47 13.29 21.45 0.28 -56.18 16 9 Si 0.96 43.07 29.54 68.60 2.03 45.09 16 10 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 11 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 12 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 13 C 0.14 4.84 4.56 86.38 0.39 5.24 16 14 N -0.70 -18.47 4.96 -466.40 -2.31 -20.78 16 15 C 0.59 17.10 7.81 86.66 0.68 17.78 16 16 O -0.57 -20.39 15.33 -4.06 -0.06 -20.45 16 17 C -0.28 -6.52 6.47 -18.74 -0.12 -6.65 16 18 C 0.04 0.75 11.95 87.29 1.04 1.80 16 19 N -0.37 -8.00 12.01 -54.17 -0.65 -8.65 16 20 O 0.09 1.84 10.86 77.00 0.84 2.67 16 21 C 0.09 1.90 7.00 25.48 0.18 2.08 16 22 C -0.12 -2.22 5.74 -11.54 -0.07 -2.29 16 23 C -0.15 -1.74 10.19 30.62 0.31 -1.43 16 24 C -0.15 -2.04 10.24 30.62 0.31 -1.72 16 25 H 0.07 1.66 6.86 -2.39 -0.02 1.64 16 26 H 0.06 1.95 6.62 -2.39 -0.02 1.94 16 27 H 0.04 1.29 8.14 -2.39 -0.02 1.28 16 28 H 0.04 1.30 8.14 -2.38 -0.02 1.28 16 29 H 0.06 1.96 6.62 -2.39 -0.02 1.94 16 30 H 0.07 1.65 6.86 -2.39 -0.02 1.63 16 31 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 32 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 33 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 34 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.41 8.29 5.53 -92.70 -0.51 7.77 16 37 H 0.23 2.47 7.88 -2.91 -0.02 2.44 16 38 H 0.14 3.07 6.96 -2.39 -0.02 3.06 16 39 H 0.11 1.19 8.02 -2.38 -0.02 1.17 16 40 H 0.13 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.12 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.10 1.34 8.14 -2.38 -0.02 1.32 16 Total: -1.00 -68.60 347.65 5.29 -63.31 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: 0.52 Total: 13.68 kcal Atomic # 6 Polarization: -23.34 SS G_CDS: 4.64 Total: -18.70 kcal Atomic # 7 Polarization: -82.94 SS G_CDS: -2.68 Total: -85.62 kcal Atomic # 8 Polarization: -18.55 SS G_CDS: 0.77 Total: -17.78 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.09 kcal Total: -68.60 5.29 -63.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324768382.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.349 kcal (2) G-P(sol) polarization free energy of solvation -68.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds