Wall clock time and date at job start Tue Mar 31 2020 06:51:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32875 * 1 3 3 C 1.47117 * 119.99586 * 2 1 4 4 C 1.32878 * 119.99761 * 175.38669 * 3 2 1 5 5 C 1.50692 * 119.99987 * 6.56216 * 4 3 2 6 6 C 1.52997 * 109.47339 * 125.99492 * 5 4 3 7 7 N 1.46500 * 109.47480 * 179.97438 * 6 5 4 8 8 C 1.34772 * 120.00400 * 179.97438 * 7 6 5 9 9 O 1.21357 * 119.99709 * 0.02562 * 8 7 6 10 10 C 1.49451 * 120.00548 * 180.02562 * 8 7 6 11 11 O 1.21348 * 119.99257 * 354.92883 * 10 8 7 12 12 N 1.34778 * 120.00272 * 174.93036 * 10 8 7 13 13 C 1.46494 * 119.99985 * 184.95667 * 12 10 8 14 14 C 1.52999 * 109.47340 * 184.97977 * 13 12 10 15 15 C 1.50700 * 115.54502 * 65.12965 * 14 13 12 16 16 H 1.08001 * 120.00270 * 273.55256 * 15 14 13 17 17 C 1.37878 * 120.00039 * 93.56126 * 15 14 13 18 18 N 1.31521 * 119.99922 * 4.57208 * 17 15 14 19 19 Si 1.86802 * 120.00340 * 184.57025 * 17 15 14 20 20 H 1.48497 * 109.46864 * 59.99655 * 19 17 15 21 21 H 1.48497 * 109.47055 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47042 * 299.99961 * 19 17 15 23 23 C 1.52995 * 117.49635 * 279.46456 * 14 13 12 24 24 C 1.52994 * 117.50235 * 210.80197 * 14 13 12 25 25 H 1.07996 * 119.99860 * 359.97438 * 1 2 3 26 26 H 1.07998 * 119.99882 * 179.72428 * 1 2 3 27 27 H 1.07996 * 120.00389 * 180.02562 * 2 1 3 28 28 H 1.08002 * 120.00494 * 355.39359 * 3 2 1 29 29 H 1.07996 * 119.99720 * 186.55972 * 4 3 2 30 30 H 1.09000 * 109.47587 * 245.99699 * 5 4 3 31 31 H 1.09001 * 109.47210 * 5.99525 * 5 4 3 32 32 H 1.08997 * 109.47182 * 300.00135 * 6 5 4 33 33 H 1.09001 * 109.46942 * 59.99869 * 6 5 4 34 34 H 0.96998 * 120.00029 * 0.02562 * 7 6 5 35 35 H 0.97005 * 119.99552 * 4.95816 * 12 10 8 36 36 H 1.09004 * 109.47105 * 304.98245 * 13 12 10 37 37 H 1.09005 * 109.47117 * 64.97886 * 13 12 10 38 38 H 0.96996 * 119.99985 * 185.00864 * 18 17 15 39 39 H 1.08995 * 117.50513 * 359.97438 * 23 14 13 40 40 H 1.09006 * 117.49790 * 145.02058 * 23 14 13 41 41 H 1.08992 * 117.50098 * 214.98048 * 24 14 13 42 42 H 1.09004 * 117.49399 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3288 0.0000 0.0000 3 6 2.0642 1.2741 0.0000 4 6 3.3898 1.2760 0.0926 5 6 4.1500 -0.0243 0.0485 6 6 5.2179 0.0459 -1.0449 7 7 5.9574 -1.2180 -1.0873 8 6 6.9529 -1.3867 -1.9800 9 8 7.2371 -0.4914 -2.7483 10 6 7.7070 -2.6763 -2.0237 11 8 7.4860 -3.5365 -1.1968 12 7 8.6324 -2.8838 -2.9813 13 6 9.2935 -4.1864 -3.0910 14 6 10.3783 -4.1188 -4.1679 15 6 11.5318 -3.1956 -3.8712 16 1 11.4658 -2.1487 -4.1285 17 6 12.6717 -3.6873 -3.2713 18 7 12.7891 -4.9767 -3.0399 19 14 14.0495 -2.5224 -2.7874 20 1 13.5351 -1.5240 -1.8160 21 1 15.1552 -3.2946 -2.1658 22 1 14.5537 -1.8227 -3.9963 23 6 9.9348 -4.2492 -5.6264 24 6 10.6812 -5.4001 -4.9471 25 1 -0.5400 0.9353 0.0004 26 1 -0.5400 -0.9353 -0.0045 27 1 1.8688 -0.9352 -0.0004 28 1 1.5269 2.2079 -0.0751 29 1 3.9223 2.2095 0.1993 30 1 4.6280 -0.1987 1.0125 31 1 3.4612 -0.8408 -0.1683 32 1 4.7399 0.2202 -2.0089 33 1 5.9067 0.8624 -0.8280 34 1 5.7300 -1.9338 -0.4735 35 1 8.8606 -2.1705 -3.5979 36 1 9.7470 -4.4455 -2.1343 37 1 8.5592 -4.9450 -3.3622 38 1 13.5573 -5.3141 -2.5533 39 1 8.8705 -4.3836 -5.8188 40 1 10.4778 -3.6676 -6.3715 41 1 11.7148 -5.5753 -5.2454 42 1 10.1080 -6.2915 -4.6921 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001334593118.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:02 Heat of formation + Delta-G solvation = -16.868435 kcal Electronic energy + Delta-G solvation = -22185.700378 eV Core-core repulsion = 18746.387036 eV Total energy + Delta-G solvation = -3439.313342 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.27325 -38.32941 -37.12958 -36.72764 -35.07162 -33.41779 -32.19479 -31.91766 -29.06626 -27.05757 -25.48508 -24.26684 -22.30732 -22.15269 -21.11965 -20.05066 -19.55710 -18.68620 -17.94232 -16.67140 -16.32116 -16.06704 -15.70775 -15.28099 -14.89992 -14.76509 -14.56707 -14.45135 -13.87095 -13.50514 -13.08155 -12.77129 -12.72745 -12.52839 -12.38812 -11.95953 -11.83283 -11.55591 -11.34212 -11.12968 -10.99436 -10.92754 -10.90240 -10.54530 -10.21054 -9.59351 -9.26633 -9.25899 -9.15007 -8.70169 -8.49921 -8.39165 -8.16362 -6.08291 -4.17631 0.98158 1.76630 2.59164 2.79559 3.29077 3.34060 3.37194 3.58076 4.00292 4.36558 4.37681 4.63165 4.67237 4.76380 4.89173 4.95083 5.17308 5.22089 5.29662 5.37585 5.39599 5.58297 5.71284 5.96736 5.99673 6.13535 6.20030 6.29279 6.30430 6.37951 6.46347 6.53513 6.64901 6.75487 6.97268 7.12144 7.20091 7.35075 7.59295 7.81012 7.82982 8.11751 8.32171 8.50050 8.84338 9.49576 10.98454 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.025071 B = 0.002673 C = 0.002542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.571142 B =10472.372305 C =11011.044571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.136 4.136 3 C -0.135 4.135 4 C -0.135 4.135 5 C -0.114 4.114 6 C 0.123 3.877 7 N -0.709 5.709 8 C 0.508 3.492 9 O -0.519 6.519 10 C 0.496 3.504 11 O -0.540 6.540 12 N -0.667 5.667 13 C 0.159 3.841 14 C 0.015 3.985 15 C -0.497 4.497 16 H 0.060 0.940 17 C 0.073 3.927 18 N -0.876 5.876 19 Si 0.890 3.110 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.276 1.276 23 C -0.213 4.213 24 C -0.131 4.131 25 H 0.097 0.903 26 H 0.101 0.899 27 H 0.119 0.881 28 H 0.116 0.884 29 H 0.119 0.881 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.412 0.588 35 H 0.413 0.587 36 H 0.075 0.925 37 H 0.044 0.956 38 H 0.262 0.738 39 H 0.064 0.936 40 H 0.079 0.921 41 H 0.094 0.906 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.297 8.587 5.554 21.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.153 4.153 3 C -0.154 4.154 4 C -0.154 4.154 5 C -0.151 4.151 6 C 0.000 4.000 7 N -0.363 5.363 8 C 0.289 3.711 9 O -0.394 6.394 10 C 0.275 3.725 11 O -0.418 6.418 12 N -0.316 5.316 13 C 0.036 3.964 14 C 0.014 3.986 15 C -0.535 4.535 16 H 0.078 0.922 17 C -0.131 4.131 18 N -0.513 5.513 19 Si 0.718 3.282 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.202 1.202 23 C -0.250 4.250 24 C -0.169 4.169 25 H 0.115 0.885 26 H 0.119 0.881 27 H 0.136 0.864 28 H 0.134 0.866 29 H 0.137 0.863 30 H 0.101 0.899 31 H 0.101 0.899 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.248 0.752 35 H 0.249 0.751 36 H 0.093 0.907 37 H 0.063 0.937 38 H 0.072 0.928 39 H 0.082 0.918 40 H 0.098 0.902 41 H 0.113 0.887 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -19.062 8.448 5.569 21.581 hybrid contribution 0.785 0.617 0.407 1.078 sum -18.277 9.066 5.976 21.259 Atomic orbital electron populations 1.24390 0.95689 1.01982 0.99620 1.22159 0.95475 0.97182 1.00527 1.21919 0.94750 0.96895 1.01786 1.23206 0.94878 0.98258 0.99046 1.21041 0.97587 0.97085 0.99410 1.21339 0.93332 0.85967 0.99378 1.45738 1.34830 1.18117 1.37606 1.20492 0.80896 0.88679 0.80989 1.90756 1.65843 1.43043 1.39791 1.19922 0.82265 0.87222 0.83083 1.90714 1.67036 1.45397 1.38691 1.45869 1.36938 1.17257 1.31545 1.21262 0.92854 0.80900 1.01375 1.19052 0.94371 0.98638 0.86529 1.20330 0.97709 0.94173 1.41285 0.92151 1.24984 0.97756 0.94918 0.95451 1.69998 1.30323 1.11764 1.39177 0.86690 0.81590 0.80991 0.78955 1.20173 1.21265 1.20151 1.23090 0.97721 1.05488 0.98737 1.22452 0.99992 0.90753 1.03735 0.88450 0.88102 0.86366 0.86600 0.86340 0.89874 0.89906 0.90902 0.90874 0.75203 0.75092 0.90698 0.93729 0.92827 0.91766 0.90220 0.88748 0.91897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.12 14.43 28.88 0.42 -0.70 16 2 C -0.14 -0.96 9.30 -37.83 -0.35 -1.31 16 3 C -0.14 -0.94 9.83 -37.83 -0.37 -1.31 16 4 C -0.14 -0.93 9.59 -36.16 -0.35 -1.28 16 5 C -0.11 -0.82 5.57 -27.89 -0.16 -0.98 16 6 C 0.12 1.20 5.66 -4.04 -0.02 1.18 16 7 N -0.71 -8.63 5.55 -60.73 -0.34 -8.97 16 8 C 0.51 8.22 7.89 -11.59 -0.09 8.13 16 9 O -0.52 -9.46 16.49 5.49 0.09 -9.37 16 10 C 0.50 9.22 7.88 -11.58 -0.09 9.13 16 11 O -0.54 -10.87 16.47 5.50 0.09 -10.77 16 12 N -0.67 -13.21 5.45 -60.73 -0.33 -13.54 16 13 C 0.16 3.48 5.53 -4.05 -0.02 3.46 16 14 C 0.01 0.35 1.60 -155.67 -0.25 0.10 16 15 C -0.50 -12.99 8.76 -34.44 -0.30 -13.29 16 16 H 0.06 1.57 7.82 -52.49 -0.41 1.16 16 17 C 0.07 1.94 5.41 -17.82 -0.10 1.85 16 18 N -0.88 -24.13 11.90 55.43 0.66 -23.47 16 19 Si 0.89 20.89 29.54 -169.99 -5.02 15.86 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 23 C -0.21 -4.46 9.96 -26.70 -0.27 -4.73 16 24 C -0.13 -3.00 8.85 -26.70 -0.24 -3.23 16 25 H 0.10 0.52 8.05 -52.49 -0.42 0.10 16 26 H 0.10 0.53 8.06 -52.49 -0.42 0.11 16 27 H 0.12 0.78 5.84 -52.49 -0.31 0.48 16 28 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 29 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 30 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.08 0.56 5.34 -51.93 -0.28 0.28 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.41 4.46 7.95 -40.82 -0.32 4.14 16 35 H 0.41 8.07 7.94 -40.82 -0.32 7.75 16 36 H 0.07 1.83 8.10 -51.93 -0.42 1.41 16 37 H 0.04 0.93 8.09 -51.93 -0.42 0.51 16 38 H 0.26 6.96 8.32 -40.82 -0.34 6.62 16 39 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 40 H 0.08 1.67 8.14 -51.93 -0.42 1.25 16 41 H 0.09 2.35 7.63 -51.93 -0.40 1.95 16 42 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 365.08 15.07 5.50 5.50 Total: -1.00 -29.63 365.08 -7.78 -37.40 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: -6.24 Total: 10.35 kcal Atomic # 6 Polarization: -0.80 SS G_CDS: -2.19 Total: -2.99 kcal Atomic # 7 Polarization: -45.98 SS G_CDS: -0.01 Total: -45.98 kcal Atomic # 8 Polarization: -20.33 SS G_CDS: 0.18 Total: -20.15 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -29.63 -7.78 -37.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334593118.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.535 kcal (2) G-P(sol) polarization free energy of solvation -29.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds