Wall clock time and date at job start Tue Mar 31 2020 06:51:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32875 * 1 3 3 C 1.47117 * 119.99586 * 2 1 4 4 C 1.32878 * 119.99761 * 175.38669 * 3 2 1 5 5 C 1.50692 * 119.99987 * 6.56216 * 4 3 2 6 6 C 1.52997 * 109.47339 * 125.99492 * 5 4 3 7 7 N 1.46500 * 109.47480 * 179.97438 * 6 5 4 8 8 C 1.34772 * 120.00400 * 179.97438 * 7 6 5 9 9 O 1.21357 * 119.99709 * 0.02562 * 8 7 6 10 10 C 1.49451 * 120.00548 * 180.02562 * 8 7 6 11 11 O 1.21348 * 119.99257 * 354.92883 * 10 8 7 12 12 N 1.34778 * 120.00272 * 174.93036 * 10 8 7 13 13 C 1.46494 * 119.99985 * 184.95667 * 12 10 8 14 14 C 1.52999 * 109.47340 * 184.97977 * 13 12 10 15 15 C 1.50700 * 115.54502 * 65.12965 * 14 13 12 16 16 H 1.08001 * 120.00270 * 273.55256 * 15 14 13 17 17 C 1.37878 * 120.00039 * 93.56126 * 15 14 13 18 18 N 1.31521 * 119.99922 * 4.57208 * 17 15 14 19 19 Si 1.86802 * 120.00340 * 184.57025 * 17 15 14 20 20 H 1.48497 * 109.46864 * 59.99655 * 19 17 15 21 21 H 1.48497 * 109.47055 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47042 * 299.99961 * 19 17 15 23 23 C 1.52995 * 117.49635 * 279.46456 * 14 13 12 24 24 C 1.52994 * 117.50235 * 210.80197 * 14 13 12 25 25 H 1.07996 * 119.99860 * 359.97438 * 1 2 3 26 26 H 1.07998 * 119.99882 * 179.72428 * 1 2 3 27 27 H 1.07996 * 120.00389 * 180.02562 * 2 1 3 28 28 H 1.08002 * 120.00494 * 355.39359 * 3 2 1 29 29 H 1.07996 * 119.99720 * 186.55972 * 4 3 2 30 30 H 1.09000 * 109.47587 * 245.99699 * 5 4 3 31 31 H 1.09001 * 109.47210 * 5.99525 * 5 4 3 32 32 H 1.08997 * 109.47182 * 300.00135 * 6 5 4 33 33 H 1.09001 * 109.46942 * 59.99869 * 6 5 4 34 34 H 0.96998 * 120.00029 * 0.02562 * 7 6 5 35 35 H 0.97005 * 119.99552 * 4.95816 * 12 10 8 36 36 H 1.09004 * 109.47105 * 304.98245 * 13 12 10 37 37 H 1.09005 * 109.47117 * 64.97886 * 13 12 10 38 38 H 0.96996 * 119.99985 * 185.00864 * 18 17 15 39 39 H 1.08995 * 117.50513 * 359.97438 * 23 14 13 40 40 H 1.09006 * 117.49790 * 145.02058 * 23 14 13 41 41 H 1.08992 * 117.50098 * 214.98048 * 24 14 13 42 42 H 1.09004 * 117.49399 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3288 0.0000 0.0000 3 6 2.0642 1.2741 0.0000 4 6 3.3898 1.2760 0.0926 5 6 4.1500 -0.0243 0.0485 6 6 5.2179 0.0459 -1.0449 7 7 5.9574 -1.2180 -1.0873 8 6 6.9529 -1.3867 -1.9800 9 8 7.2371 -0.4914 -2.7483 10 6 7.7070 -2.6763 -2.0237 11 8 7.4860 -3.5365 -1.1968 12 7 8.6324 -2.8838 -2.9813 13 6 9.2935 -4.1864 -3.0910 14 6 10.3783 -4.1188 -4.1679 15 6 11.5318 -3.1956 -3.8712 16 1 11.4658 -2.1487 -4.1285 17 6 12.6717 -3.6873 -3.2713 18 7 12.7891 -4.9767 -3.0399 19 14 14.0495 -2.5224 -2.7874 20 1 13.5351 -1.5240 -1.8160 21 1 15.1552 -3.2946 -2.1658 22 1 14.5537 -1.8227 -3.9963 23 6 9.9348 -4.2492 -5.6264 24 6 10.6812 -5.4001 -4.9471 25 1 -0.5400 0.9353 0.0004 26 1 -0.5400 -0.9353 -0.0045 27 1 1.8688 -0.9352 -0.0004 28 1 1.5269 2.2079 -0.0751 29 1 3.9223 2.2095 0.1993 30 1 4.6280 -0.1987 1.0125 31 1 3.4612 -0.8408 -0.1683 32 1 4.7399 0.2202 -2.0089 33 1 5.9067 0.8624 -0.8280 34 1 5.7300 -1.9338 -0.4735 35 1 8.8606 -2.1705 -3.5979 36 1 9.7470 -4.4455 -2.1343 37 1 8.5592 -4.9450 -3.3622 38 1 13.5573 -5.3141 -2.5533 39 1 8.8705 -4.3836 -5.8188 40 1 10.4778 -3.6676 -6.3715 41 1 11.7148 -5.5753 -5.2454 42 1 10.1080 -6.2915 -4.6921 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001334593118.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:01 Heat of formation + Delta-G solvation = -35.600151 kcal Electronic energy + Delta-G solvation = -22186.512646 eV Core-core repulsion = 18746.387036 eV Total energy + Delta-G solvation = -3440.125610 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.64365 -39.74322 -38.47339 -37.84038 -36.04626 -34.95722 -33.91175 -32.88534 -29.86220 -28.64080 -27.39934 -25.41323 -23.40826 -22.85513 -22.65527 -21.43336 -21.23305 -19.76676 -18.96445 -18.07092 -17.78538 -17.23095 -16.81630 -16.69075 -16.42451 -16.12727 -15.62431 -15.51480 -15.41146 -14.78194 -14.54128 -14.37620 -13.74685 -13.42536 -13.24781 -13.20226 -13.02173 -12.95238 -12.80582 -12.77135 -12.48326 -12.41079 -11.98739 -11.66200 -11.45185 -11.40088 -11.04102 -10.75841 -10.38829 -10.32227 -10.15401 -9.92909 -9.20494 -8.10985 -6.24212 0.37743 0.47845 1.38618 1.41864 1.43281 1.49748 2.16855 2.21606 2.41683 2.73155 3.15358 3.43907 3.61602 3.83466 3.98256 4.13065 4.19294 4.21330 4.37759 4.52393 4.57806 4.62028 4.68316 4.74619 4.89342 4.90288 4.95441 5.03372 5.04425 5.20247 5.32065 5.35133 5.49023 5.57036 5.64507 5.73284 5.77194 5.81512 5.98820 6.04633 6.35770 6.45486 6.77765 6.82446 7.00113 7.44667 8.94908 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.025071 B = 0.002673 C = 0.002542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.571142 B =10472.372305 C =11011.044571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.155 4.155 3 C -0.138 4.138 4 C -0.143 4.143 5 C -0.105 4.105 6 C 0.122 3.878 7 N -0.688 5.688 8 C 0.514 3.486 9 O -0.542 6.542 10 C 0.496 3.504 11 O -0.556 6.556 12 N -0.670 5.670 13 C 0.173 3.827 14 C -0.009 4.009 15 C -0.507 4.507 16 H 0.056 0.944 17 C 0.026 3.974 18 N -0.902 5.902 19 Si 0.945 3.055 20 H -0.277 1.277 21 H -0.286 1.286 22 H -0.271 1.271 23 C -0.184 4.184 24 C -0.138 4.138 25 H 0.105 0.895 26 H 0.109 0.891 27 H 0.120 0.880 28 H 0.125 0.875 29 H 0.128 0.872 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.420 0.580 35 H 0.415 0.585 36 H 0.042 0.958 37 H 0.058 0.942 38 H 0.260 0.740 39 H 0.091 0.909 40 H 0.079 0.921 41 H 0.068 0.932 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.879 9.648 5.776 23.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.173 4.173 3 C -0.156 4.156 4 C -0.161 4.161 5 C -0.143 4.143 6 C 0.000 4.000 7 N -0.342 5.342 8 C 0.294 3.706 9 O -0.420 6.420 10 C 0.276 3.724 11 O -0.436 6.436 12 N -0.319 5.319 13 C 0.050 3.950 14 C -0.009 4.009 15 C -0.544 4.544 16 H 0.074 0.926 17 C -0.175 4.175 18 N -0.540 5.540 19 Si 0.771 3.229 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.196 1.196 23 C -0.221 4.221 24 C -0.176 4.176 25 H 0.123 0.877 26 H 0.127 0.873 27 H 0.138 0.862 28 H 0.143 0.857 29 H 0.145 0.855 30 H 0.109 0.891 31 H 0.107 0.893 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.258 0.742 35 H 0.251 0.749 36 H 0.060 0.940 37 H 0.076 0.924 38 H 0.069 0.931 39 H 0.110 0.890 40 H 0.098 0.902 41 H 0.086 0.914 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -20.679 9.523 5.811 23.496 hybrid contribution 1.169 0.296 0.359 1.258 sum -19.510 9.819 6.170 22.697 Atomic orbital electron populations 1.24590 0.95606 1.02820 0.98311 1.22295 0.95962 0.97396 1.01635 1.22089 0.94934 0.97318 1.01302 1.23256 0.94945 0.98352 0.99582 1.20974 0.96857 0.97705 0.98719 1.21521 0.93646 0.84480 1.00355 1.45738 1.33219 1.19206 1.36012 1.19985 0.81574 0.87289 0.81757 1.90753 1.66866 1.43264 1.41091 1.20363 0.81789 0.88035 0.82176 1.90701 1.67444 1.46312 1.39111 1.45784 1.37339 1.16600 1.32206 1.20892 0.92703 0.82291 0.99129 1.19105 0.94625 0.98801 0.88400 1.20614 0.98633 0.94415 1.40770 0.92623 1.25642 0.99832 0.96142 0.95840 1.70101 1.30864 1.12959 1.40060 0.85822 0.79211 0.79224 0.78617 1.20244 1.21180 1.19598 1.23066 0.98997 1.03284 0.96763 1.22354 0.99141 0.91561 1.04566 0.87693 0.87298 0.86232 0.85684 0.85459 0.89081 0.89344 0.91110 0.90891 0.74241 0.74891 0.93993 0.92435 0.93096 0.89019 0.90242 0.91353 0.90603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.88 14.43 66.64 0.96 -0.92 16 2 C -0.16 -1.93 9.30 23.43 0.22 -1.71 16 3 C -0.14 -1.68 9.83 23.43 0.23 -1.45 16 4 C -0.14 -1.69 9.59 24.51 0.24 -1.46 16 5 C -0.11 -1.31 5.57 29.84 0.17 -1.14 16 6 C 0.12 2.17 5.66 86.38 0.49 2.66 16 7 N -0.69 -15.66 5.55 -464.42 -2.58 -18.23 16 8 C 0.51 16.04 7.89 87.27 0.69 16.72 16 9 O -0.54 -19.23 16.49 -3.27 -0.05 -19.28 16 10 C 0.50 18.11 7.88 87.27 0.69 18.80 16 11 O -0.56 -22.05 16.47 -3.24 -0.05 -22.10 16 12 N -0.67 -26.23 5.45 -464.41 -2.53 -28.76 16 13 C 0.17 7.57 5.53 86.38 0.48 8.05 16 14 C -0.01 -0.40 1.60 -52.93 -0.08 -0.48 16 15 C -0.51 -26.53 8.76 25.60 0.22 -26.31 16 16 H 0.06 2.89 7.82 -2.91 -0.02 2.87 16 17 C 0.03 1.41 5.41 84.65 0.46 1.87 16 18 N -0.90 -50.43 11.90 21.45 0.26 -50.18 16 19 Si 0.95 43.11 29.54 68.60 2.03 45.14 16 20 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 21 H -0.29 -12.91 7.11 99.48 0.71 -12.21 16 22 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 23 C -0.18 -7.42 9.96 30.62 0.30 -7.11 16 24 C -0.14 -6.26 8.85 30.62 0.27 -5.99 16 25 H 0.10 0.93 8.05 -2.91 -0.02 0.90 16 26 H 0.11 0.95 8.06 -2.91 -0.02 0.92 16 27 H 0.12 1.39 5.84 -2.91 -0.02 1.37 16 28 H 0.13 1.23 8.06 -2.91 -0.02 1.21 16 29 H 0.13 1.25 8.06 -2.91 -0.02 1.23 16 30 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.09 1.02 5.34 -2.39 -0.01 1.00 16 32 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.42 8.34 7.95 -92.71 -0.74 7.60 16 35 H 0.41 16.00 7.94 -92.70 -0.74 15.26 16 36 H 0.04 2.09 8.10 -2.38 -0.02 2.07 16 37 H 0.06 2.34 8.09 -2.38 -0.02 2.32 16 38 H 0.26 14.04 8.32 -92.71 -0.77 13.26 16 39 H 0.09 3.21 8.14 -2.39 -0.02 3.19 16 40 H 0.08 3.21 8.14 -2.38 -0.02 3.19 16 41 H 0.07 3.45 7.63 -2.39 -0.02 3.43 16 42 H 0.08 3.18 8.14 -2.39 -0.02 3.16 16 Total: -1.00 -62.57 365.08 1.95 -60.62 By element: Atomic # 1 Polarization: 31.71 SS G_CDS: -0.44 Total: 31.27 kcal Atomic # 6 Polarization: -3.80 SS G_CDS: 5.33 Total: 1.53 kcal Atomic # 7 Polarization: -92.32 SS G_CDS: -4.85 Total: -97.17 kcal Atomic # 8 Polarization: -41.27 SS G_CDS: -0.11 Total: -41.38 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -62.57 1.95 -60.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334593118.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.015 kcal (2) G-P(sol) polarization free energy of solvation -62.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds