Wall clock time and date at job start Tue Mar 31 2020 06:51:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32871 * 1 3 3 C 1.47114 * 120.00353 * 2 1 4 4 C 1.32868 * 120.00208 * 180.02562 * 3 2 1 5 5 C 1.50706 * 120.00144 * 179.97438 * 4 3 2 6 6 C 1.53003 * 109.47147 * 124.99596 * 5 4 3 7 7 N 1.46501 * 109.46871 * 180.02562 * 6 5 4 8 8 C 1.34769 * 120.00011 * 180.02562 * 7 6 5 9 9 O 1.21358 * 119.99800 * 359.97438 * 8 7 6 10 10 C 1.49453 * 120.00473 * 179.97438 * 8 7 6 11 11 O 1.21351 * 119.99369 * 5.09242 * 10 8 7 12 12 N 1.34769 * 120.00243 * 185.08548 * 10 8 7 13 13 C 1.46497 * 120.00011 * 185.03773 * 12 10 8 14 14 C 1.53005 * 109.47129 * 184.78311 * 13 12 10 15 15 C 1.50703 * 115.54676 * 294.81585 * 14 13 12 16 16 H 1.07998 * 119.99578 * 95.20301 * 15 14 13 17 17 C 1.37876 * 120.00032 * 274.92215 * 15 14 13 18 18 N 1.31513 * 120.00087 * 355.42383 * 17 15 14 19 19 Si 1.86797 * 119.99764 * 175.41970 * 17 15 14 20 20 H 1.48506 * 109.47089 * 90.00605 * 19 17 15 21 21 H 1.48500 * 109.47109 * 210.00447 * 19 17 15 22 22 H 1.48505 * 109.47313 * 330.00182 * 19 17 15 23 23 C 1.52992 * 117.50017 * 80.49188 * 14 13 12 24 24 C 1.52998 * 117.49741 * 149.15238 * 14 13 12 25 25 H 1.08000 * 120.00084 * 180.02562 * 1 2 3 26 26 H 1.07995 * 119.99758 * 0.02562 * 1 2 3 27 27 H 1.08004 * 120.00018 * 179.97438 * 2 1 3 28 28 H 1.08004 * 119.99629 * 359.97438 * 3 2 1 29 29 H 1.07995 * 119.99903 * 359.97438 * 4 3 2 30 30 H 1.09007 * 109.46700 * 4.99437 * 5 4 3 31 31 H 1.08999 * 109.46985 * 245.00102 * 5 4 3 32 32 H 1.08999 * 109.46869 * 60.00151 * 6 5 4 33 33 H 1.08999 * 109.46858 * 300.00006 * 6 5 4 34 34 H 0.97004 * 120.00150 * 359.97438 * 7 6 5 35 35 H 0.97000 * 120.00088 * 5.04363 * 12 10 8 36 36 H 1.09004 * 109.47290 * 64.78043 * 13 12 10 37 37 H 1.09002 * 109.47245 * 304.78204 * 13 12 10 38 38 H 0.97005 * 120.00163 * 184.99518 * 18 17 15 39 39 H 1.09001 * 117.49686 * 215.00072 * 23 14 13 40 40 H 1.09004 * 117.49963 * 0.02562 * 23 14 13 41 41 H 1.09001 * 117.50544 * 359.96959 * 24 14 13 42 42 H 1.09001 * 117.50141 * 144.97625 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0644 1.2740 0.0000 4 6 3.3930 1.2740 -0.0005 5 6 4.1466 2.5791 -0.0011 6 6 5.1186 2.6073 1.1802 7 7 5.8507 3.8763 1.1800 8 6 6.7680 4.1252 2.1354 9 8 6.9872 3.2984 2.9962 10 6 7.5153 5.4195 2.1349 11 8 7.2320 6.2833 1.3310 12 7 8.5036 5.6273 3.0272 13 6 9.1616 6.9342 3.1003 14 6 10.3162 6.8685 4.1021 15 6 9.9197 6.6277 5.5359 16 1 9.9251 5.6247 5.9365 17 6 9.5555 7.6884 6.3380 18 7 9.6403 8.9184 5.8802 19 14 8.9417 7.3784 8.0748 20 1 10.0916 7.3843 9.0146 21 1 7.9831 8.4455 8.4588 22 1 8.2626 6.0590 8.1317 23 6 11.6345 6.2587 3.6217 24 6 11.5262 7.7691 3.8455 25 1 -0.5400 -0.9353 0.0004 26 1 -0.5399 0.9353 -0.0004 27 1 1.8687 -0.9353 0.0004 28 1 1.5243 2.2093 -0.0004 29 1 3.9330 0.3387 -0.0005 30 1 3.4417 3.4057 0.0885 31 1 4.7040 2.6763 -0.9327 32 1 5.8234 1.7807 1.0906 33 1 4.5610 2.5101 2.1118 34 1 5.6757 4.5371 0.4916 35 1 8.7794 4.9116 3.6210 36 1 8.4417 7.6858 3.4243 37 1 9.5486 7.2017 2.1170 38 1 9.4538 9.6682 6.4668 39 1 12.2151 5.6832 4.3427 40 1 11.6795 5.9046 2.5918 41 1 11.5000 8.4080 2.9627 42 1 12.0353 8.1876 4.7137 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001334593119.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:06 Heat of formation + Delta-G solvation = -23.679899 kcal Electronic energy + Delta-G solvation = -22013.272967 eV Core-core repulsion = 18573.664258 eV Total energy + Delta-G solvation = -3439.608709 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.25677 -38.29949 -36.83924 -36.72183 -35.15792 -33.44657 -32.47528 -31.97280 -28.95971 -27.03026 -25.49335 -24.35044 -22.38734 -21.17066 -21.03508 -20.07894 -19.77770 -19.46116 -18.01000 -16.62081 -16.19324 -16.10974 -15.56465 -15.32199 -14.76150 -14.68111 -14.51055 -14.46586 -13.85600 -13.54512 -13.16920 -12.71176 -12.69100 -12.51092 -12.36505 -11.88990 -11.63254 -11.59419 -11.42720 -11.27294 -11.21212 -10.99757 -10.94952 -10.52864 -10.25389 -9.62483 -9.25565 -9.24662 -9.09381 -8.70445 -8.53817 -8.39471 -8.18680 -6.09021 -4.18619 0.97917 1.77824 2.61375 2.79245 3.26699 3.34593 3.38673 3.59132 4.01031 4.35681 4.38259 4.60224 4.68190 4.79560 4.92903 4.99647 5.11120 5.18563 5.29390 5.33946 5.40317 5.57579 5.71925 5.94920 5.95449 6.15500 6.20788 6.28060 6.30339 6.39458 6.47120 6.52272 6.66203 6.74486 6.98401 7.08009 7.20990 7.32493 7.49543 7.80832 7.84753 8.14096 8.31192 8.51331 8.83558 9.49042 10.97986 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.021345 B = 0.002611 C = 0.002437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.451559 B =10721.849252 C =11485.702751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.129 4.129 3 C -0.135 4.135 4 C -0.136 4.136 5 C -0.105 4.105 6 C 0.122 3.878 7 N -0.709 5.709 8 C 0.508 3.492 9 O -0.518 6.518 10 C 0.495 3.505 11 O -0.542 6.542 12 N -0.666 5.666 13 C 0.159 3.841 14 C 0.020 3.980 15 C -0.500 4.500 16 H 0.062 0.938 17 C 0.073 3.927 18 N -0.876 5.876 19 Si 0.890 3.110 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.272 1.272 23 C -0.210 4.210 24 C -0.139 4.139 25 H 0.100 0.900 26 H 0.098 0.902 27 H 0.113 0.887 28 H 0.114 0.886 29 H 0.116 0.884 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.412 0.588 35 H 0.414 0.586 36 H 0.074 0.926 37 H 0.048 0.952 38 H 0.262 0.738 39 H 0.079 0.921 40 H 0.065 0.935 41 H 0.064 0.936 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.888 -13.109 -12.273 21.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.147 4.147 3 C -0.153 4.153 4 C -0.154 4.154 5 C -0.142 4.142 6 C -0.001 4.001 7 N -0.364 5.364 8 C 0.289 3.711 9 O -0.393 6.393 10 C 0.275 3.725 11 O -0.421 6.421 12 N -0.315 5.315 13 C 0.037 3.963 14 C 0.019 3.981 15 C -0.537 4.537 16 H 0.080 0.920 17 C -0.131 4.131 18 N -0.512 5.512 19 Si 0.718 3.282 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.196 1.196 23 C -0.247 4.247 24 C -0.177 4.177 25 H 0.119 0.881 26 H 0.117 0.883 27 H 0.131 0.869 28 H 0.132 0.868 29 H 0.134 0.866 30 H 0.096 0.904 31 H 0.102 0.898 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.248 0.752 35 H 0.250 0.750 36 H 0.092 0.908 37 H 0.066 0.934 38 H 0.071 0.929 39 H 0.098 0.902 40 H 0.084 0.916 41 H 0.083 0.917 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -12.012 -12.873 -12.139 21.386 hybrid contribution -0.321 -0.057 0.968 1.021 sum -12.334 -12.930 -11.171 21.074 Atomic orbital electron populations 1.24379 0.95669 1.02035 0.99757 1.22003 0.95499 0.96717 1.00489 1.21981 0.94668 0.96927 1.01691 1.23213 0.94897 0.98170 0.99145 1.20913 0.98302 0.96381 0.98649 1.21363 0.94135 0.85774 0.98874 1.45743 1.39932 1.20136 1.30554 1.20498 0.80757 0.87976 0.81897 1.90764 1.65019 1.47221 1.36255 1.19922 0.82259 0.87431 0.82926 1.90710 1.66935 1.45556 1.38898 1.45894 1.33403 1.16900 1.35346 1.21215 0.95618 0.82067 0.97422 1.19047 0.84678 1.00269 0.94134 1.20377 1.46196 0.93705 0.93460 0.91994 1.24993 0.94712 0.95161 0.98268 1.69987 1.47768 0.97912 1.35512 0.86612 0.78885 0.78200 0.84514 1.20644 1.21175 1.19620 1.23033 1.05137 0.97287 0.99240 1.22474 1.04029 0.90503 1.00721 0.88130 0.88333 0.86948 0.86772 0.86615 0.90431 0.89761 0.90858 0.90871 0.75197 0.74983 0.90784 0.93380 0.92857 0.90204 0.91638 0.91725 0.89384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.11 14.43 28.88 0.42 -0.70 16 2 C -0.13 -0.89 9.83 -37.83 -0.37 -1.26 16 3 C -0.13 -0.97 9.44 -37.83 -0.36 -1.33 16 4 C -0.14 -0.95 9.22 -36.16 -0.33 -1.28 16 5 C -0.11 -0.74 5.78 -27.88 -0.16 -0.90 16 6 C 0.12 1.20 5.66 -4.04 -0.02 1.17 16 7 N -0.71 -8.69 5.55 -60.73 -0.34 -9.03 16 8 C 0.51 8.30 7.89 -11.59 -0.09 8.21 16 9 O -0.52 -9.60 16.50 5.49 0.09 -9.51 16 10 C 0.50 9.27 7.88 -11.59 -0.09 9.18 16 11 O -0.54 -10.90 16.47 5.50 0.09 -10.81 16 12 N -0.67 -13.36 5.46 -60.73 -0.33 -13.69 16 13 C 0.16 3.54 5.53 -4.04 -0.02 3.51 16 14 C 0.02 0.46 1.47 -155.66 -0.23 0.23 16 15 C -0.50 -12.96 8.59 -34.44 -0.30 -13.26 16 16 H 0.06 1.60 7.82 -52.49 -0.41 1.19 16 17 C 0.07 1.93 5.43 -17.82 -0.10 1.84 16 18 N -0.88 -24.09 12.65 55.43 0.70 -23.39 16 19 Si 0.89 20.81 29.54 -169.99 -5.02 15.79 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 21 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 23 C -0.21 -4.36 9.96 -26.70 -0.27 -4.63 16 24 C -0.14 -3.15 9.14 -26.70 -0.24 -3.39 16 25 H 0.10 0.49 8.06 -52.49 -0.42 0.07 16 26 H 0.10 0.55 8.05 -52.49 -0.42 0.13 16 27 H 0.11 0.67 8.06 -52.48 -0.42 0.25 16 28 H 0.11 0.76 7.87 -52.48 -0.41 0.35 16 29 H 0.12 0.72 8.05 -52.49 -0.42 0.30 16 30 H 0.08 0.52 7.82 -51.92 -0.41 0.11 16 31 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.41 4.47 7.96 -40.82 -0.32 4.15 16 35 H 0.41 8.24 7.84 -40.82 -0.32 7.92 16 36 H 0.07 1.84 8.14 -51.93 -0.42 1.41 16 37 H 0.05 1.03 8.05 -51.93 -0.42 0.61 16 38 H 0.26 6.92 8.32 -40.82 -0.34 6.58 16 39 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 40 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 41 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 42 H 0.09 2.14 8.14 -51.93 -0.42 1.71 16 LS Contribution 370.76 15.07 5.59 5.59 Total: -1.00 -29.57 370.76 -7.89 -37.46 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: -6.50 Total: 10.19 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: -2.17 Total: -2.60 kcal Atomic # 7 Polarization: -46.14 SS G_CDS: 0.03 Total: -46.11 kcal Atomic # 8 Polarization: -20.50 SS G_CDS: 0.18 Total: -20.32 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -29.57 -7.89 -37.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334593119.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.781 kcal (2) G-P(sol) polarization free energy of solvation -29.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds