Wall clock time and date at job start Tue Mar 31 2020 06:51:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32871 * 1 3 3 C 1.47114 * 120.00353 * 2 1 4 4 C 1.32868 * 120.00208 * 180.02562 * 3 2 1 5 5 C 1.50706 * 120.00144 * 179.97438 * 4 3 2 6 6 C 1.53003 * 109.47147 * 124.99596 * 5 4 3 7 7 N 1.46501 * 109.46871 * 180.02562 * 6 5 4 8 8 C 1.34769 * 120.00011 * 180.02562 * 7 6 5 9 9 O 1.21358 * 119.99800 * 359.97438 * 8 7 6 10 10 C 1.49453 * 120.00473 * 179.97438 * 8 7 6 11 11 O 1.21351 * 119.99369 * 5.09242 * 10 8 7 12 12 N 1.34769 * 120.00243 * 185.08548 * 10 8 7 13 13 C 1.46497 * 120.00011 * 185.03773 * 12 10 8 14 14 C 1.53005 * 109.47129 * 184.78311 * 13 12 10 15 15 C 1.50703 * 115.54676 * 294.81585 * 14 13 12 16 16 H 1.07998 * 119.99578 * 95.20301 * 15 14 13 17 17 C 1.37876 * 120.00032 * 274.92215 * 15 14 13 18 18 N 1.31513 * 120.00087 * 355.42383 * 17 15 14 19 19 Si 1.86797 * 119.99764 * 175.41970 * 17 15 14 20 20 H 1.48506 * 109.47089 * 90.00605 * 19 17 15 21 21 H 1.48500 * 109.47109 * 210.00447 * 19 17 15 22 22 H 1.48505 * 109.47313 * 330.00182 * 19 17 15 23 23 C 1.52992 * 117.50017 * 80.49188 * 14 13 12 24 24 C 1.52998 * 117.49741 * 149.15238 * 14 13 12 25 25 H 1.08000 * 120.00084 * 180.02562 * 1 2 3 26 26 H 1.07995 * 119.99758 * 0.02562 * 1 2 3 27 27 H 1.08004 * 120.00018 * 179.97438 * 2 1 3 28 28 H 1.08004 * 119.99629 * 359.97438 * 3 2 1 29 29 H 1.07995 * 119.99903 * 359.97438 * 4 3 2 30 30 H 1.09007 * 109.46700 * 4.99437 * 5 4 3 31 31 H 1.08999 * 109.46985 * 245.00102 * 5 4 3 32 32 H 1.08999 * 109.46869 * 60.00151 * 6 5 4 33 33 H 1.08999 * 109.46858 * 300.00006 * 6 5 4 34 34 H 0.97004 * 120.00150 * 359.97438 * 7 6 5 35 35 H 0.97000 * 120.00088 * 5.04363 * 12 10 8 36 36 H 1.09004 * 109.47290 * 64.78043 * 13 12 10 37 37 H 1.09002 * 109.47245 * 304.78204 * 13 12 10 38 38 H 0.97005 * 120.00163 * 184.99518 * 18 17 15 39 39 H 1.09001 * 117.49686 * 215.00072 * 23 14 13 40 40 H 1.09004 * 117.49963 * 0.02562 * 23 14 13 41 41 H 1.09001 * 117.50544 * 359.96959 * 24 14 13 42 42 H 1.09001 * 117.50141 * 144.97625 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0644 1.2740 0.0000 4 6 3.3930 1.2740 -0.0005 5 6 4.1466 2.5791 -0.0011 6 6 5.1186 2.6073 1.1802 7 7 5.8507 3.8763 1.1800 8 6 6.7680 4.1252 2.1354 9 8 6.9872 3.2984 2.9962 10 6 7.5153 5.4195 2.1349 11 8 7.2320 6.2833 1.3310 12 7 8.5036 5.6273 3.0272 13 6 9.1616 6.9342 3.1003 14 6 10.3162 6.8685 4.1021 15 6 9.9197 6.6277 5.5359 16 1 9.9251 5.6247 5.9365 17 6 9.5555 7.6884 6.3380 18 7 9.6403 8.9184 5.8802 19 14 8.9417 7.3784 8.0748 20 1 10.0916 7.3843 9.0146 21 1 7.9831 8.4455 8.4588 22 1 8.2626 6.0590 8.1317 23 6 11.6345 6.2587 3.6217 24 6 11.5262 7.7691 3.8455 25 1 -0.5400 -0.9353 0.0004 26 1 -0.5399 0.9353 -0.0004 27 1 1.8687 -0.9353 0.0004 28 1 1.5243 2.2093 -0.0004 29 1 3.9330 0.3387 -0.0005 30 1 3.4417 3.4057 0.0885 31 1 4.7040 2.6763 -0.9327 32 1 5.8234 1.7807 1.0906 33 1 4.5610 2.5101 2.1118 34 1 5.6757 4.5371 0.4916 35 1 8.7794 4.9116 3.6210 36 1 8.4417 7.6858 3.4243 37 1 9.5486 7.2017 2.1170 38 1 9.4538 9.6682 6.4668 39 1 12.2151 5.6832 4.3427 40 1 11.6795 5.9046 2.5918 41 1 11.5000 8.4080 2.9627 42 1 12.0353 8.1876 4.7137 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001334593119.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:04 Heat of formation + Delta-G solvation = -42.224145 kcal Electronic energy + Delta-G solvation = -22014.077106 eV Core-core repulsion = 18573.664258 eV Total energy + Delta-G solvation = -3440.412848 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 2.10 seconds Orbital eigenvalues (eV) -41.64284 -39.73884 -38.46432 -37.57981 -36.05635 -34.97366 -33.96520 -33.23157 -29.77762 -28.60820 -27.39902 -25.46742 -23.50586 -22.88726 -21.77244 -21.40474 -20.95136 -20.48280 -19.47059 -18.09312 -17.82635 -17.18198 -16.71940 -16.58720 -16.39362 -16.11285 -15.78863 -15.28609 -15.13137 -14.92818 -14.55563 -14.41640 -13.68869 -13.49132 -13.32145 -13.16846 -12.98659 -12.95828 -12.83312 -12.74587 -12.38586 -12.22577 -12.01439 -11.88644 -11.74180 -11.42154 -10.98223 -10.76222 -10.45775 -10.32639 -10.12032 -9.96299 -9.21464 -8.10984 -6.24435 0.37446 0.47069 1.38943 1.40350 1.44100 1.52282 2.16819 2.21962 2.41390 2.72887 3.16488 3.42823 3.60193 3.81477 4.00887 4.09163 4.19833 4.21168 4.45368 4.51568 4.55690 4.62613 4.68624 4.69549 4.88430 4.91864 4.93563 5.02290 5.03153 5.20151 5.28574 5.34866 5.45091 5.52793 5.66737 5.68449 5.77028 5.79507 5.98546 6.03462 6.35492 6.46390 6.77751 6.82949 6.99915 7.45095 8.95555 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.021345 B = 0.002611 C = 0.002437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.451559 B =10721.849252 C =11485.702751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.147 4.147 3 C -0.141 4.141 4 C -0.140 4.140 5 C -0.095 4.095 6 C 0.120 3.880 7 N -0.688 5.688 8 C 0.513 3.487 9 O -0.543 6.543 10 C 0.496 3.504 11 O -0.556 6.556 12 N -0.670 5.670 13 C 0.175 3.825 14 C -0.006 4.006 15 C -0.506 4.506 16 H 0.058 0.942 17 C 0.027 3.973 18 N -0.903 5.903 19 Si 0.945 3.055 20 H -0.275 1.275 21 H -0.288 1.288 22 H -0.270 1.270 23 C -0.180 4.180 24 C -0.145 4.145 25 H 0.112 0.888 26 H 0.101 0.899 27 H 0.119 0.881 28 H 0.117 0.883 29 H 0.123 0.877 30 H 0.083 0.917 31 H 0.097 0.903 32 H 0.077 0.923 33 H 0.066 0.934 34 H 0.421 0.579 35 H 0.415 0.585 36 H 0.040 0.960 37 H 0.056 0.944 38 H 0.260 0.740 39 H 0.082 0.918 40 H 0.090 0.910 41 H 0.076 0.924 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.631 -14.530 -13.193 23.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.165 4.165 3 C -0.159 4.159 4 C -0.159 4.159 5 C -0.132 4.132 6 C -0.002 4.002 7 N -0.342 5.342 8 C 0.293 3.707 9 O -0.420 6.420 10 C 0.277 3.723 11 O -0.436 6.436 12 N -0.320 5.320 13 C 0.052 3.948 14 C -0.007 4.007 15 C -0.544 4.544 16 H 0.076 0.924 17 C -0.174 4.174 18 N -0.541 5.541 19 Si 0.772 3.228 20 H -0.201 1.201 21 H -0.214 1.214 22 H -0.195 1.195 23 C -0.217 4.217 24 C -0.183 4.183 25 H 0.130 0.870 26 H 0.120 0.880 27 H 0.137 0.863 28 H 0.135 0.865 29 H 0.140 0.860 30 H 0.101 0.899 31 H 0.115 0.885 32 H 0.095 0.905 33 H 0.084 0.916 34 H 0.258 0.742 35 H 0.251 0.749 36 H 0.058 0.942 37 H 0.075 0.925 38 H 0.069 0.931 39 H 0.101 0.899 40 H 0.109 0.891 41 H 0.094 0.906 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -12.779 -14.312 -13.093 23.229 hybrid contribution -0.155 0.348 1.186 1.246 sum -12.935 -13.964 -11.907 22.452 Atomic orbital electron populations 1.24577 0.95617 1.02827 0.98598 1.22152 0.95942 0.96934 1.01429 1.22121 0.94930 0.97297 1.01531 1.23246 0.94873 0.98321 0.99418 1.20843 0.97785 0.96764 0.97840 1.21554 0.94385 0.84363 0.99910 1.45736 1.38213 1.21079 1.29129 1.20009 0.81399 0.86684 0.82630 1.90761 1.66172 1.47542 1.37531 1.20352 0.81687 0.88273 0.82025 1.90696 1.67159 1.46406 1.39334 1.45811 1.34075 1.16090 1.35981 1.20829 0.94445 0.82346 0.97224 1.19105 0.85862 1.02143 0.93572 1.20640 1.45543 0.93378 0.94842 0.92429 1.25643 0.95151 0.95134 1.01485 1.70085 1.49043 0.98429 1.36500 0.85747 0.78342 0.77781 0.80966 1.20088 1.21391 1.19499 1.23021 1.02415 0.95755 1.00548 1.22394 1.03670 0.91897 1.00363 0.86965 0.88026 0.86324 0.86516 0.85955 0.89869 0.88459 0.90500 0.91582 0.74162 0.74878 0.94150 0.92548 0.93071 0.89922 0.89130 0.90585 0.91623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.93 14.43 66.64 0.96 -0.96 16 2 C -0.15 -1.81 9.83 23.43 0.23 -1.58 16 3 C -0.14 -1.81 9.44 23.42 0.22 -1.59 16 4 C -0.14 -1.69 9.22 24.51 0.23 -1.46 16 5 C -0.10 -1.12 5.78 29.85 0.17 -0.95 16 6 C 0.12 2.13 5.66 86.38 0.49 2.62 16 7 N -0.69 -15.66 5.55 -464.41 -2.58 -18.23 16 8 C 0.51 16.18 7.89 87.27 0.69 16.87 16 9 O -0.54 -19.64 16.50 -3.27 -0.05 -19.70 16 10 C 0.50 18.21 7.88 87.27 0.69 18.90 16 11 O -0.56 -21.92 16.47 -3.25 -0.05 -21.98 16 12 N -0.67 -26.64 5.46 -464.41 -2.54 -29.17 16 13 C 0.17 7.77 5.53 86.38 0.48 8.24 16 14 C -0.01 -0.28 1.47 -52.93 -0.08 -0.36 16 15 C -0.51 -26.32 8.59 25.60 0.22 -26.10 16 16 H 0.06 2.97 7.82 -2.91 -0.02 2.95 16 17 C 0.03 1.44 5.43 84.65 0.46 1.90 16 18 N -0.90 -50.41 12.65 21.45 0.27 -50.14 16 19 Si 0.95 42.96 29.54 68.60 2.03 44.99 16 20 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 21 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 22 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 23 C -0.18 -7.21 9.96 30.61 0.30 -6.91 16 24 C -0.15 -6.51 9.14 30.62 0.28 -6.23 16 25 H 0.11 0.90 8.06 -2.91 -0.02 0.88 16 26 H 0.10 0.99 8.05 -2.91 -0.02 0.97 16 27 H 0.12 1.25 8.06 -2.91 -0.02 1.23 16 28 H 0.12 1.38 7.87 -2.91 -0.02 1.36 16 29 H 0.12 1.30 8.05 -2.91 -0.02 1.27 16 30 H 0.08 0.92 7.82 -2.38 -0.02 0.90 16 31 H 0.10 0.93 8.14 -2.39 -0.02 0.92 16 32 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.42 8.25 7.96 -92.71 -0.74 7.52 16 35 H 0.41 16.36 7.84 -92.71 -0.73 15.64 16 36 H 0.04 2.05 8.14 -2.39 -0.02 2.03 16 37 H 0.06 2.38 8.05 -2.39 -0.02 2.36 16 38 H 0.26 13.99 8.32 -92.70 -0.77 13.21 16 39 H 0.08 3.26 8.14 -2.39 -0.02 3.24 16 40 H 0.09 3.18 8.14 -2.38 -0.02 3.16 16 41 H 0.08 3.18 8.14 -2.39 -0.02 3.16 16 42 H 0.07 3.22 8.14 -2.39 -0.02 3.20 16 Total: -1.00 -62.44 370.76 1.97 -60.47 By element: Atomic # 1 Polarization: 31.81 SS G_CDS: -0.45 Total: 31.36 kcal Atomic # 6 Polarization: -2.94 SS G_CDS: 5.34 Total: 2.40 kcal Atomic # 7 Polarization: -92.70 SS G_CDS: -4.84 Total: -97.54 kcal Atomic # 8 Polarization: -41.57 SS G_CDS: -0.11 Total: -41.67 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Total: -62.44 1.97 -60.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334593119.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.242 kcal (2) G-P(sol) polarization free energy of solvation -62.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.10 seconds