Wall clock time and date at job start Tue Mar 31 2020 07:02:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35680 * 117.00311 * 2 1 4 4 C 1.38894 * 119.62510 * 180.02562 * 3 2 1 5 5 C 1.39566 * 118.94658 * 180.30232 * 4 3 2 6 6 C 1.48168 * 120.89391 * 179.70108 * 5 4 3 7 7 O 1.21510 * 119.99295 * 359.97438 * 6 5 4 8 8 N 1.34772 * 119.99943 * 180.02562 * 6 5 4 9 9 C 1.46507 * 119.99752 * 180.02562 * 8 6 5 10 10 C 1.52996 * 109.47274 * 179.97438 * 9 8 6 11 11 C 1.53001 * 109.47012 * 299.99869 * 10 9 8 12 12 C 1.52999 * 109.47080 * 59.99697 * 10 9 8 13 13 C 1.52999 * 109.47401 * 179.97438 * 10 9 8 14 14 C 1.50700 * 109.47321 * 180.02562 * 13 10 9 15 15 H 1.07999 * 119.99516 * 359.97438 * 14 13 10 16 16 C 1.37873 * 119.99698 * 180.02562 * 14 13 10 17 17 N 1.31513 * 120.00471 * 359.97438 * 16 14 13 18 18 Si 1.86808 * 119.99655 * 179.97438 * 16 14 13 19 19 H 1.48492 * 109.47180 * 89.99433 * 18 16 14 20 20 H 1.48500 * 109.46745 * 209.99929 * 18 16 14 21 21 H 1.48500 * 109.47070 * 329.99712 * 18 16 14 22 22 C 1.39977 * 118.21532 * 359.43981 * 5 4 3 23 23 C 1.37968 * 119.13433 * 0.57547 * 22 5 4 24 24 N 1.31908 * 120.97699 * 359.68848 * 23 22 5 25 25 H 1.08999 * 109.47068 * 59.99938 * 1 2 3 26 26 H 1.09002 * 109.47092 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47039 * 299.99883 * 1 2 3 28 28 H 1.08002 * 120.52328 * 0.02562 * 4 3 2 29 29 H 0.96998 * 120.00625 * 359.97438 * 8 6 5 30 30 H 1.09000 * 109.46765 * 299.99570 * 9 8 6 31 31 H 1.08997 * 109.46939 * 59.99374 * 9 8 6 32 32 H 1.08999 * 109.47390 * 59.99679 * 11 10 9 33 33 H 1.08999 * 109.46877 * 179.97438 * 11 10 9 34 34 H 1.08997 * 109.47164 * 299.99654 * 11 10 9 35 35 H 1.08994 * 109.47509 * 59.99990 * 12 10 9 36 36 H 1.09006 * 109.47481 * 180.02562 * 12 10 9 37 37 H 1.09004 * 109.47572 * 299.99917 * 12 10 9 38 38 H 1.09000 * 109.46932 * 300.00173 * 13 10 9 39 39 H 1.09003 * 109.46811 * 59.99480 * 13 10 9 40 40 H 0.97002 * 120.00120 * 180.02562 * 17 16 14 41 41 H 1.08001 * 120.43210 * 180.29075 * 22 5 4 42 42 H 1.08001 * 119.51228 * 179.69963 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2089 0.0000 4 6 3.4325 1.2724 -0.0005 5 6 4.0515 2.5233 0.0059 6 6 5.5284 2.6413 0.0122 7 8 6.2177 1.6407 0.0123 8 7 6.1071 3.8585 0.0190 9 6 7.5676 3.9751 0.0246 10 6 7.9611 5.4536 0.0310 11 6 7.3999 6.1361 -1.2180 12 6 7.3907 6.1277 1.2804 13 6 9.4862 5.5754 0.0376 14 6 9.8738 7.0317 0.0446 15 1 9.1088 7.7940 0.0439 16 6 11.2050 7.3906 0.0507 17 7 12.1365 6.4623 0.0510 18 14 11.6855 9.1959 0.0586 19 1 11.8075 9.6695 1.4606 20 1 12.9871 9.3646 -0.6361 21 1 10.6437 9.9884 -0.6427 22 6 3.2395 3.6635 0.0006 23 6 1.8682 3.5115 0.0014 24 7 1.3179 2.3127 0.0009 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 4.0231 0.3681 -0.0014 29 1 5.5569 4.6572 0.0193 30 1 7.9674 3.4885 0.9143 31 1 7.9738 3.4951 -0.8656 32 1 6.3133 6.0493 -1.2223 33 1 7.6799 7.1895 -1.2132 34 1 7.8062 5.6558 -2.1081 35 1 7.7905 5.6416 2.1703 36 1 7.6707 7.1812 1.2848 37 1 6.3041 6.0410 1.2762 38 1 9.8857 5.0892 0.9277 39 1 9.8929 5.0949 -0.8523 40 1 13.0731 6.7149 0.0557 41 1 3.6806 4.6493 0.0006 42 1 1.2359 4.3871 0.0023 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001342782303.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:32 Heat of formation + Delta-G solvation = -51.221678 kcal Electronic energy + Delta-G solvation = -22825.433729 eV Core-core repulsion = 19384.630719 eV Total energy + Delta-G solvation = -3440.803010 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.07392 -39.62645 -38.02641 -37.13885 -33.87144 -32.85859 -32.07836 -30.98285 -27.68556 -27.23279 -26.58512 -26.57587 -24.33519 -23.61099 -22.69599 -20.67338 -19.20918 -17.96743 -17.54227 -16.66656 -16.33665 -16.26886 -15.98307 -15.46035 -15.22221 -14.59440 -14.39467 -14.37709 -13.90271 -13.76546 -13.44503 -13.19816 -12.83716 -12.46947 -12.24012 -12.09651 -12.02989 -11.54739 -11.22753 -11.05798 -10.89037 -10.68705 -10.47082 -10.38524 -10.30119 -10.18416 -9.93799 -9.87674 -9.24094 -8.97340 -8.88307 -8.85993 -8.38955 -6.02886 -4.04477 0.46527 0.82731 2.65165 2.81259 3.24800 3.28886 3.36229 3.37712 3.59914 3.96827 4.40450 4.43439 4.65948 4.74917 4.78718 4.96005 4.99537 5.28168 5.32549 5.38181 5.41786 5.51471 5.55121 5.67415 5.76903 5.96012 6.09095 6.14587 6.21038 6.31590 6.43064 6.57117 6.66275 6.87878 6.99324 7.01869 7.06091 7.45597 7.54405 7.60402 7.71691 7.95280 8.18674 8.36903 9.00167 9.58874 11.08487 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.043298 B = 0.002708 C = 0.002596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.520049 B =10337.494322 C =10782.337684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.306 6.306 3 C 0.317 3.683 4 C -0.133 4.133 5 C -0.047 4.047 6 C 0.550 3.450 7 O -0.530 6.530 8 N -0.709 5.709 9 C 0.126 3.874 10 C -0.073 4.073 11 C -0.128 4.128 12 C -0.128 4.128 13 C 0.036 3.964 14 C -0.512 4.512 15 H 0.060 0.940 16 C 0.056 3.944 17 N -0.894 5.894 18 Si 0.889 3.111 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.275 1.275 22 C -0.182 4.182 23 C 0.138 3.862 24 N -0.530 5.530 25 H 0.059 0.941 26 H 0.097 0.903 27 H 0.059 0.941 28 H 0.155 0.845 29 H 0.399 0.601 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.028 0.972 33 H 0.068 0.932 34 H 0.048 0.952 35 H 0.049 0.951 36 H 0.068 0.932 37 H 0.028 0.972 38 H 0.019 0.981 39 H 0.019 0.981 40 H 0.260 0.740 41 H 0.143 0.857 42 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.613 -6.559 -0.110 23.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.212 6.212 3 C 0.138 3.862 4 C -0.155 4.155 5 C -0.057 4.057 6 C 0.335 3.665 7 O -0.407 6.407 8 N -0.361 5.361 9 C 0.004 3.996 10 C -0.073 4.073 11 C -0.185 4.185 12 C -0.185 4.185 13 C -0.002 4.002 14 C -0.550 4.550 15 H 0.078 0.922 16 C -0.145 4.145 17 N -0.533 5.533 18 Si 0.717 3.283 19 H -0.208 1.208 20 H -0.213 1.213 21 H -0.199 1.199 22 C -0.203 4.203 23 C -0.018 4.018 24 N -0.254 5.254 25 H 0.078 0.922 26 H 0.115 0.885 27 H 0.078 0.922 28 H 0.173 0.827 29 H 0.236 0.764 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.047 0.953 33 H 0.087 0.913 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.087 0.913 37 H 0.047 0.953 38 H 0.037 0.963 39 H 0.037 0.963 40 H 0.070 0.930 41 H 0.161 0.839 42 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -22.680 -7.646 -0.114 23.935 hybrid contribution 0.766 1.599 0.014 1.773 sum -21.915 -6.047 -0.100 22.734 Atomic orbital electron populations 1.22881 0.77029 1.03084 1.02497 1.86265 1.23031 1.24186 1.87753 1.19682 0.89005 0.84836 0.92694 1.21148 0.91851 0.99267 1.03232 1.20266 0.94237 0.93240 0.97995 1.18073 0.86522 0.84164 0.77735 1.90793 1.64090 1.36445 1.49354 1.46121 1.09372 1.07255 1.73304 1.21743 0.77025 0.98586 1.02244 1.20921 1.00683 0.90543 0.95162 1.21776 0.97151 1.02297 0.97310 1.21778 0.97126 1.02316 0.97315 1.19096 0.86071 0.97418 0.97585 1.21162 0.91495 0.91920 1.50428 0.92240 1.25017 0.96852 0.97119 0.95524 1.69961 1.00237 1.32381 1.50730 0.86642 0.77951 0.85640 0.78035 1.20769 1.21337 1.19948 1.22204 0.94967 0.99140 1.03960 1.22359 0.92526 0.93625 0.93245 1.67186 1.41257 0.98939 1.18030 0.92221 0.88505 0.92211 0.82743 0.76398 0.91362 0.91371 0.95335 0.91270 0.93238 0.93236 0.91278 0.95336 0.96268 0.96260 0.93002 0.83950 0.81634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.29 10.38 101.05 1.05 1.34 16 2 O -0.31 -3.31 10.47 -18.74 -0.20 -3.51 16 3 C 0.32 3.69 7.49 -17.16 -0.13 3.56 16 4 C -0.13 -1.65 9.61 -38.84 -0.37 -2.02 16 5 C -0.05 -0.57 5.91 -104.67 -0.62 -1.19 16 6 C 0.55 8.19 7.80 -12.18 -0.10 8.10 16 7 O -0.53 -9.83 16.44 5.36 0.09 -9.74 16 8 N -0.71 -9.84 4.92 -61.15 -0.30 -10.14 16 9 C 0.13 2.14 4.56 -4.04 -0.02 2.12 16 10 C -0.07 -1.32 0.54 -154.51 -0.08 -1.40 16 11 C -0.13 -2.13 8.05 37.16 0.30 -1.83 16 12 C -0.13 -2.13 8.05 37.16 0.30 -1.83 16 13 C 0.04 0.85 4.04 -27.88 -0.11 0.74 16 14 C -0.51 -13.26 7.65 -34.44 -0.26 -13.52 16 15 H 0.06 1.48 5.68 -52.49 -0.30 1.18 16 16 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 17 N -0.89 -26.04 13.29 55.43 0.74 -25.30 16 18 Si 0.89 20.87 29.54 -169.99 -5.02 15.85 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 22 C -0.18 -1.69 9.61 -39.03 -0.38 -2.06 16 23 C 0.14 1.19 11.17 -17.62 -0.20 0.99 16 24 N -0.53 -5.63 9.18 -13.38 -0.12 -5.76 16 25 H 0.06 0.42 8.10 -51.93 -0.42 0.00 16 26 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.42 8.10 -51.93 -0.42 0.00 16 28 H 0.15 1.94 7.74 -52.49 -0.41 1.53 16 29 H 0.40 4.54 4.30 -40.82 -0.18 4.36 16 30 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.03 0.37 6.86 -51.93 -0.36 0.02 16 33 H 0.07 1.25 6.62 -51.93 -0.34 0.90 16 34 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.07 1.24 6.62 -51.93 -0.34 0.90 16 37 H 0.03 0.37 6.86 -51.93 -0.36 0.02 16 38 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 41 H 0.14 0.98 6.53 -52.49 -0.34 0.64 16 42 H 0.17 0.87 8.06 -52.49 -0.42 0.45 16 LS Contribution 346.24 15.07 5.22 5.22 Total: -1.00 -31.53 346.24 -6.29 -37.83 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -5.98 Total: 1.12 kcal Atomic # 6 Polarization: -4.85 SS G_CDS: -0.72 Total: -5.56 kcal Atomic # 7 Polarization: -41.52 SS G_CDS: 0.31 Total: -41.21 kcal Atomic # 8 Polarization: -13.14 SS G_CDS: -0.11 Total: -13.24 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.53 -6.29 -37.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342782303.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.393 kcal (2) G-P(sol) polarization free energy of solvation -31.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds