Wall clock time and date at job start Tue Mar 31 2020 07:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35680 * 117.00311 * 2 1 4 4 C 1.38894 * 119.62510 * 180.02562 * 3 2 1 5 5 C 1.39566 * 118.94658 * 180.30232 * 4 3 2 6 6 C 1.48168 * 120.89391 * 179.70108 * 5 4 3 7 7 O 1.21510 * 119.99295 * 359.97438 * 6 5 4 8 8 N 1.34772 * 119.99943 * 180.02562 * 6 5 4 9 9 C 1.46507 * 119.99752 * 180.02562 * 8 6 5 10 10 C 1.52996 * 109.47274 * 179.97438 * 9 8 6 11 11 C 1.53001 * 109.47012 * 299.99869 * 10 9 8 12 12 C 1.52999 * 109.47080 * 59.99697 * 10 9 8 13 13 C 1.52999 * 109.47401 * 179.97438 * 10 9 8 14 14 C 1.50700 * 109.47321 * 180.02562 * 13 10 9 15 15 H 1.07999 * 119.99516 * 359.97438 * 14 13 10 16 16 C 1.37873 * 119.99698 * 180.02562 * 14 13 10 17 17 N 1.31513 * 120.00471 * 359.97438 * 16 14 13 18 18 Si 1.86808 * 119.99655 * 179.97438 * 16 14 13 19 19 H 1.48492 * 109.47180 * 89.99433 * 18 16 14 20 20 H 1.48500 * 109.46745 * 209.99929 * 18 16 14 21 21 H 1.48500 * 109.47070 * 329.99712 * 18 16 14 22 22 C 1.39977 * 118.21532 * 359.43981 * 5 4 3 23 23 C 1.37968 * 119.13433 * 0.57547 * 22 5 4 24 24 N 1.31908 * 120.97699 * 359.68848 * 23 22 5 25 25 H 1.08999 * 109.47068 * 59.99938 * 1 2 3 26 26 H 1.09002 * 109.47092 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47039 * 299.99883 * 1 2 3 28 28 H 1.08002 * 120.52328 * 0.02562 * 4 3 2 29 29 H 0.96998 * 120.00625 * 359.97438 * 8 6 5 30 30 H 1.09000 * 109.46765 * 299.99570 * 9 8 6 31 31 H 1.08997 * 109.46939 * 59.99374 * 9 8 6 32 32 H 1.08999 * 109.47390 * 59.99679 * 11 10 9 33 33 H 1.08999 * 109.46877 * 179.97438 * 11 10 9 34 34 H 1.08997 * 109.47164 * 299.99654 * 11 10 9 35 35 H 1.08994 * 109.47509 * 59.99990 * 12 10 9 36 36 H 1.09006 * 109.47481 * 180.02562 * 12 10 9 37 37 H 1.09004 * 109.47572 * 299.99917 * 12 10 9 38 38 H 1.09000 * 109.46932 * 300.00173 * 13 10 9 39 39 H 1.09003 * 109.46811 * 59.99480 * 13 10 9 40 40 H 0.97002 * 120.00120 * 180.02562 * 17 16 14 41 41 H 1.08001 * 120.43210 * 180.29075 * 22 5 4 42 42 H 1.08001 * 119.51228 * 179.69963 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2089 0.0000 4 6 3.4325 1.2724 -0.0005 5 6 4.0515 2.5233 0.0059 6 6 5.5284 2.6413 0.0122 7 8 6.2177 1.6407 0.0123 8 7 6.1071 3.8585 0.0190 9 6 7.5676 3.9751 0.0246 10 6 7.9611 5.4536 0.0310 11 6 7.3999 6.1361 -1.2180 12 6 7.3907 6.1277 1.2804 13 6 9.4862 5.5754 0.0376 14 6 9.8738 7.0317 0.0446 15 1 9.1088 7.7940 0.0439 16 6 11.2050 7.3906 0.0507 17 7 12.1365 6.4623 0.0510 18 14 11.6855 9.1959 0.0586 19 1 11.8075 9.6695 1.4606 20 1 12.9871 9.3646 -0.6361 21 1 10.6437 9.9884 -0.6427 22 6 3.2395 3.6635 0.0006 23 6 1.8682 3.5115 0.0014 24 7 1.3179 2.3127 0.0009 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 4.0231 0.3681 -0.0014 29 1 5.5569 4.6572 0.0193 30 1 7.9674 3.4885 0.9143 31 1 7.9738 3.4951 -0.8656 32 1 6.3133 6.0493 -1.2223 33 1 7.6799 7.1895 -1.2132 34 1 7.8062 5.6558 -2.1081 35 1 7.7905 5.6416 2.1703 36 1 7.6707 7.1812 1.2848 37 1 6.3041 6.0410 1.2762 38 1 9.8857 5.0892 0.9277 39 1 9.8929 5.0949 -0.8523 40 1 13.0731 6.7149 0.0557 41 1 3.6806 4.6493 0.0006 42 1 1.2359 4.3871 0.0023 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001342782303.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:31 Heat of formation + Delta-G solvation = -73.438636 kcal Electronic energy + Delta-G solvation = -22826.397129 eV Core-core repulsion = 19384.630719 eV Total energy + Delta-G solvation = -3441.766410 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.94576 -40.76134 -38.94231 -38.51019 -35.38584 -34.20448 -33.48469 -31.77908 -29.14772 -28.33416 -27.93583 -27.85941 -25.63949 -24.40559 -24.29531 -21.79805 -20.36065 -19.29491 -18.40192 -18.34573 -17.45134 -17.08622 -17.04319 -16.56859 -16.48092 -16.39795 -15.31049 -15.21709 -15.20846 -14.86593 -14.72922 -14.37091 -14.33497 -13.91950 -13.77318 -13.20063 -12.86628 -12.71032 -12.67713 -12.57772 -12.31389 -12.21609 -12.20716 -11.96944 -11.54559 -11.52663 -11.09813 -11.00450 -10.86921 -10.71327 -10.49800 -10.17354 -9.62059 -8.12467 -6.20067 -0.43625 0.06422 1.44262 1.44547 1.54701 1.74795 1.78077 2.23279 2.46128 2.73976 3.22344 3.26855 3.47244 3.87345 3.91302 3.94815 4.08632 4.10164 4.23751 4.43664 4.45555 4.61982 4.69317 4.69940 4.72107 4.77527 4.80460 4.97471 4.98152 5.08791 5.15358 5.25484 5.33326 5.45806 5.53516 5.55430 5.58685 5.82312 5.91802 6.14960 6.30937 6.42337 6.69897 6.95453 7.04833 7.47778 8.99992 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.043298 B = 0.002708 C = 0.002596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.520049 B =10337.494322 C =10782.337684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.323 6.323 3 C 0.308 3.692 4 C -0.153 4.153 5 C -0.058 4.058 6 C 0.552 3.448 7 O -0.575 6.575 8 N -0.693 5.693 9 C 0.139 3.861 10 C -0.064 4.064 11 C -0.124 4.124 12 C -0.124 4.124 13 C 0.038 3.962 14 C -0.511 4.511 15 H 0.075 0.925 16 C -0.007 4.007 17 N -0.939 5.939 18 Si 0.958 3.042 19 H -0.277 1.277 20 H -0.292 1.292 21 H -0.258 1.258 22 C -0.168 4.168 23 C 0.146 3.854 24 N -0.533 5.533 25 H 0.061 0.939 26 H 0.120 0.880 27 H 0.061 0.939 28 H 0.138 0.862 29 H 0.416 0.584 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.073 0.927 33 H 0.057 0.943 34 H 0.037 0.963 35 H 0.036 0.964 36 H 0.058 0.942 37 H 0.073 0.927 38 H -0.014 1.014 39 H -0.014 1.014 40 H 0.259 0.741 41 H 0.175 0.825 42 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.992 -4.143 -0.124 26.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.230 6.230 3 C 0.130 3.870 4 C -0.175 4.175 5 C -0.069 4.069 6 C 0.339 3.661 7 O -0.455 6.455 8 N -0.346 5.346 9 C 0.015 3.985 10 C -0.064 4.064 11 C -0.181 4.181 12 C -0.181 4.181 13 C 0.000 4.000 14 C -0.549 4.549 15 H 0.093 0.907 16 C -0.204 4.204 17 N -0.581 5.581 18 Si 0.784 3.216 19 H -0.202 1.202 20 H -0.218 1.218 21 H -0.182 1.182 22 C -0.189 4.189 23 C -0.010 4.010 24 N -0.258 5.258 25 H 0.080 0.920 26 H 0.139 0.861 27 H 0.080 0.920 28 H 0.156 0.844 29 H 0.256 0.744 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.092 0.908 33 H 0.076 0.924 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.077 0.923 37 H 0.092 0.908 38 H 0.004 0.996 39 H 0.005 0.995 40 H 0.067 0.933 41 H 0.192 0.808 42 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -26.111 -5.208 -0.128 26.626 hybrid contribution 1.740 0.801 0.019 1.916 sum -24.371 -4.408 -0.109 24.766 Atomic orbital electron populations 1.23117 0.75258 1.04809 1.02654 1.86244 1.24857 1.24208 1.87673 1.19695 0.88748 0.85497 0.93057 1.21093 0.92491 0.99095 1.04856 1.20029 0.92403 0.94435 1.00030 1.18493 0.87721 0.83492 0.76414 1.90774 1.65458 1.37973 1.51340 1.45814 1.07909 1.07871 1.72965 1.21340 0.78984 0.97447 1.00722 1.20710 0.96659 0.91687 0.97363 1.21726 0.99888 1.00940 0.95576 1.21729 0.99850 1.00995 0.95572 1.18990 0.90442 0.96102 0.94430 1.21593 0.91753 0.93021 1.48524 0.90707 1.25958 0.97192 1.01620 0.95593 1.70123 1.00484 1.34757 1.52687 0.85545 0.77586 0.80320 0.78180 1.20236 1.21816 1.18184 1.22532 0.95031 0.99242 1.02073 1.23108 0.92812 0.94087 0.90961 1.67300 1.41270 0.99340 1.17858 0.91994 0.86143 0.91989 0.84377 0.74438 0.93087 0.93087 0.90830 0.92368 0.94428 0.94439 0.92329 0.90837 0.99554 0.99538 0.93251 0.80795 0.77399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.47 10.38 113.37 1.18 1.65 16 2 O -0.32 -6.81 10.47 -89.98 -0.94 -7.75 16 3 C 0.31 6.86 7.49 84.80 0.63 7.49 16 4 C -0.15 -3.79 9.61 22.75 0.22 -3.57 16 5 C -0.06 -1.33 5.91 -19.90 -0.12 -1.44 16 6 C 0.55 16.08 7.80 86.88 0.68 16.76 16 7 O -0.58 -22.07 16.44 -3.75 -0.06 -22.13 16 8 N -0.69 -17.91 4.92 -465.67 -2.29 -20.20 16 9 C 0.14 4.72 4.56 86.38 0.39 5.11 16 10 C -0.06 -2.27 0.54 -52.18 -0.03 -2.29 16 11 C -0.12 -3.84 8.05 71.98 0.58 -3.27 16 12 C -0.12 -3.85 8.05 71.98 0.58 -3.27 16 13 C 0.04 1.88 4.04 29.85 0.12 2.00 16 14 C -0.51 -26.61 7.65 25.60 0.20 -26.41 16 15 H 0.07 3.61 5.68 -2.91 -0.02 3.59 16 16 C -0.01 -0.38 5.46 84.65 0.46 0.08 16 17 N -0.94 -56.56 13.29 21.45 0.28 -56.28 16 18 Si 0.96 42.82 29.54 68.60 2.03 44.85 16 19 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 20 H -0.29 -13.17 7.11 99.48 0.71 -12.47 16 21 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 22 C -0.17 -2.43 9.61 22.63 0.22 -2.21 16 23 C 0.15 1.88 11.17 84.62 0.94 2.82 16 24 N -0.53 -9.87 9.18 -309.15 -2.84 -12.71 16 25 H 0.06 0.77 8.10 -2.39 -0.02 0.75 16 26 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.06 0.77 8.10 -2.39 -0.02 0.75 16 28 H 0.14 3.73 7.74 -2.91 -0.02 3.71 16 29 H 0.42 7.67 4.30 -92.71 -0.40 7.27 16 30 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.07 1.61 6.86 -2.39 -0.02 1.59 16 33 H 0.06 1.95 6.62 -2.39 -0.02 1.93 16 34 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.06 1.95 6.62 -2.38 -0.02 1.94 16 37 H 0.07 1.60 6.86 -2.38 -0.02 1.59 16 38 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 39 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 40 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 41 H 0.17 1.34 6.53 -2.91 -0.02 1.32 16 42 H 0.21 0.88 8.06 -2.91 -0.02 0.86 16 Total: -1.00 -72.56 346.24 2.87 -69.69 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: 0.63 Total: 11.08 kcal Atomic # 6 Polarization: -12.61 SS G_CDS: 6.06 Total: -6.55 kcal Atomic # 7 Polarization: -84.34 SS G_CDS: -4.84 Total: -89.19 kcal Atomic # 8 Polarization: -28.88 SS G_CDS: -1.00 Total: -29.88 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Total: -72.56 2.87 -69.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342782303.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.746 kcal (2) G-P(sol) polarization free energy of solvation -72.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds