Wall clock time and date at job start Tue Mar 31 2020 07:03:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.35869 * 126.16923 * 2 1 4 4 N 1.30167 * 109.11813 * 180.02562 * 3 2 1 5 5 C 1.35825 * 109.00670 * 0.02562 * 4 3 2 6 6 C 1.46725 * 126.24590 * 179.97438 * 5 4 3 7 7 C 1.35300 * 120.00362 * 0.02562 * 6 5 4 8 8 C 1.41504 * 120.00350 * 180.02562 * 7 6 5 9 9 O 1.21679 * 119.99599 * 0.02562 * 8 7 6 10 10 O 1.34956 * 120.00007 * 180.02562 * 8 7 6 11 11 C 1.42905 * 116.99977 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47264 * 179.97438 * 11 10 8 13 13 C 1.53002 * 109.46817 * 299.99852 * 12 11 10 14 14 C 1.52997 * 109.47232 * 60.00091 * 12 11 10 15 15 C 1.52996 * 109.47131 * 180.02562 * 12 11 10 16 16 C 1.50703 * 109.47130 * 179.97438 * 15 12 11 17 17 H 1.07994 * 120.00100 * 0.02562 * 16 15 12 18 18 C 1.37884 * 119.99709 * 179.97438 * 16 15 12 19 19 N 1.31511 * 119.99896 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99653 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.46942 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.46979 * 120.00266 * 20 18 16 23 23 H 1.48500 * 109.46999 * 240.00165 * 20 18 16 24 24 C 1.36016 * 126.17934 * 180.29193 * 2 1 3 25 25 H 1.09003 * 109.47565 * 89.97512 * 1 2 3 26 26 H 1.09003 * 109.46632 * 209.97364 * 1 2 3 27 27 H 1.08995 * 109.47418 * 329.96561 * 1 2 3 28 28 H 1.08002 * 125.44116 * 359.96942 * 3 2 1 29 29 H 1.08002 * 119.99551 * 180.02562 * 6 5 4 30 30 H 1.08006 * 120.00235 * 0.02562 * 7 6 5 31 31 H 1.09001 * 109.47103 * 300.00271 * 11 10 8 32 32 H 1.09004 * 109.47054 * 59.99775 * 11 10 8 33 33 H 1.09002 * 109.47070 * 60.00180 * 13 12 11 34 34 H 1.09000 * 109.46986 * 180.02562 * 13 12 11 35 35 H 1.08996 * 109.47407 * 299.99780 * 13 12 11 36 36 H 1.08988 * 109.47529 * 59.99846 * 14 12 11 37 37 H 1.09000 * 109.47140 * 180.02562 * 14 12 11 38 38 H 1.09002 * 109.46777 * 299.99578 * 14 12 11 39 39 H 1.09001 * 109.46997 * 299.99574 * 15 12 11 40 40 H 1.09004 * 109.47298 * 59.99717 * 15 12 11 41 41 H 0.97007 * 119.99539 * 179.97438 * 19 18 16 42 42 H 1.08001 * 126.64028 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2669 1.0968 0.0000 4 7 3.5113 0.7152 -0.0006 5 6 3.5577 -0.6423 -0.0015 6 6 4.7699 -1.4689 -0.0029 7 6 5.9890 -0.8821 -0.0028 8 6 7.1581 -1.6793 -0.0047 9 8 7.0670 -2.8926 -0.0068 10 8 8.3741 -1.0938 -0.0040 11 6 9.5110 -1.9596 -0.0055 12 6 10.7907 -1.1211 -0.0051 13 6 10.8213 -0.2370 -1.2535 14 6 10.8225 -0.2396 1.2450 15 6 12.0078 -2.0480 -0.0073 16 6 13.2683 -1.2220 -0.0076 17 1 13.2074 -0.1438 -0.0060 18 6 14.4994 -1.8430 -0.0089 19 7 14.5736 -3.1560 -0.0104 20 14 16.0619 -0.8191 -0.0101 21 1 15.7085 0.6232 -0.0087 22 1 16.8607 -1.1338 1.2016 23 1 16.8584 -1.1329 -1.2234 24 6 2.2679 -1.0979 -0.0056 25 1 -0.3634 0.0004 -1.0277 26 1 -0.3633 -0.8903 0.5135 27 1 -0.3634 0.8896 0.5143 28 1 1.9262 2.1217 -0.0005 29 1 4.6890 -2.5459 -0.0040 30 1 6.0699 0.1950 -0.0013 31 1 9.4889 -2.5898 0.8836 32 1 9.4885 -2.5873 -0.8964 33 1 9.9541 0.4234 -1.2524 34 1 11.7332 0.3601 -1.2536 35 1 10.7987 -0.8649 -2.1441 36 1 10.8006 -0.8693 2.1343 37 1 11.7340 0.3581 1.2450 38 1 9.9554 0.4208 1.2460 39 1 11.9862 -2.6782 0.8818 40 1 11.9850 -2.6757 -0.8982 41 1 15.4398 -3.5928 -0.0117 42 1 1.9489 -2.1297 -0.0112 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001343475271.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:31 Heat of formation + Delta-G solvation = -24.716266 kcal Electronic energy + Delta-G solvation = -22184.551665 eV Core-core repulsion = 18744.898016 eV Total energy + Delta-G solvation = -3439.653649 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.34744 -40.17983 -37.27290 -35.37625 -34.97985 -33.04126 -32.24863 -29.92473 -27.79435 -27.10893 -26.32485 -26.28840 -24.37897 -22.76062 -21.73476 -20.92718 -19.20014 -18.09354 -17.82383 -17.09852 -16.26584 -16.18698 -15.95676 -15.83448 -14.84513 -14.48981 -14.33430 -13.75861 -13.66166 -13.48640 -13.39029 -13.27035 -12.99413 -12.41772 -12.28298 -11.98628 -11.87969 -11.16904 -10.90479 -10.74621 -10.70105 -10.50208 -10.45271 -10.39293 -10.19572 -10.09422 -10.05906 -9.87928 -9.59359 -9.11480 -8.84198 -8.35142 -8.30400 -5.94425 -3.94899 0.63480 1.76483 2.25114 2.79818 3.30404 3.35391 3.43103 3.47207 3.47357 4.10096 4.11492 4.37378 4.49385 4.51075 4.76354 4.83047 4.93801 5.21256 5.41230 5.41376 5.65851 5.65935 5.66758 5.95992 6.04582 6.13790 6.21838 6.32918 6.39840 6.51675 6.64838 6.67123 6.77951 6.82715 6.99625 7.22030 7.23533 7.25811 7.58455 7.70053 7.82497 8.04835 8.17634 8.48082 9.09902 9.67730 11.17317 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.049552 B = 0.002277 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.924894 B =12296.432918 C =12659.688094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.465 5.465 3 C 0.186 3.814 4 N -0.468 5.468 5 C 0.001 3.999 6 C 0.027 3.973 7 C -0.181 4.181 8 C 0.494 3.506 9 O -0.524 6.524 10 O -0.341 6.341 11 C 0.077 3.923 12 C -0.058 4.058 13 C -0.126 4.126 14 C -0.126 4.126 15 C 0.034 3.966 16 C -0.507 4.507 17 H 0.062 0.938 18 C 0.054 3.946 19 N -0.896 5.896 20 Si 0.890 3.110 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.285 1.285 24 C -0.011 4.011 25 H 0.079 0.921 26 H 0.087 0.913 27 H 0.090 0.910 28 H 0.210 0.790 29 H 0.143 0.857 30 H 0.144 0.856 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.040 0.960 34 H 0.065 0.935 35 H 0.043 0.957 36 H 0.043 0.957 37 H 0.064 0.936 38 H 0.040 0.960 39 H 0.018 0.982 40 H 0.018 0.982 41 H 0.259 0.741 42 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.858 6.748 0.061 31.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.148 5.148 3 C -0.097 4.097 4 N -0.185 5.185 5 C -0.125 4.125 6 C 0.007 3.993 7 C -0.202 4.202 8 C 0.342 3.658 9 O -0.417 6.417 10 O -0.257 6.257 11 C 0.003 3.997 12 C -0.058 4.058 13 C -0.183 4.183 14 C -0.183 4.183 15 C -0.003 4.003 16 C -0.545 4.545 17 H 0.080 0.920 18 C -0.147 4.147 19 N -0.536 5.536 20 Si 0.719 3.281 21 H -0.197 1.197 22 H -0.212 1.212 23 H -0.212 1.212 24 C -0.147 4.147 25 H 0.098 0.902 26 H 0.106 0.894 27 H 0.109 0.891 28 H 0.226 0.774 29 H 0.161 0.839 30 H 0.162 0.838 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.059 0.941 34 H 0.084 0.916 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.083 0.917 38 H 0.059 0.941 39 H 0.036 0.964 40 H 0.036 0.964 41 H 0.068 0.932 42 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -30.183 6.801 0.063 30.940 hybrid contribution 0.186 -0.239 -0.010 0.303 sum -29.997 6.563 0.053 30.706 Atomic orbital electron populations 1.22118 0.76045 1.05045 1.03933 1.45478 1.08050 1.07016 1.54213 1.25229 0.85218 0.93561 1.05703 1.70672 1.19041 1.10938 1.17866 1.19502 0.92023 0.90071 1.10892 1.21547 0.88906 0.98435 0.90422 1.21279 0.89957 1.01738 1.07218 1.19952 0.85044 0.87027 0.73779 1.90858 1.88273 1.15763 1.46822 1.86217 1.14636 1.41725 1.83083 1.23057 0.82581 0.92392 1.01657 1.20796 0.92408 0.96588 0.96039 1.21716 1.00952 0.99127 0.96540 1.21712 1.00954 0.99131 0.96530 1.19133 0.89906 0.93834 0.97431 1.21221 0.90322 0.93123 1.49836 0.92007 1.25029 0.99160 0.94859 0.95628 1.69985 1.24500 1.07896 1.51185 0.86557 0.83575 0.80550 0.77454 1.19710 1.21166 1.21160 1.22923 0.90534 0.93007 1.08206 0.90199 0.89383 0.89103 0.77397 0.83892 0.83795 0.91976 0.91980 0.94103 0.91648 0.93819 0.93813 0.91655 0.94105 0.96360 0.96358 0.93150 0.79895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.08 11.16 59.85 0.67 0.75 16 2 N -0.47 -2.66 3.14 -125.48 -0.39 -3.05 16 3 C 0.19 1.37 12.55 -89.89 -1.13 0.25 16 4 N -0.47 -5.34 10.87 -11.10 -0.12 -5.46 16 5 C 0.00 0.01 6.85 -83.20 -0.57 -0.56 16 6 C 0.03 0.32 9.62 -37.20 -0.36 -0.04 16 7 C -0.18 -2.57 9.57 -39.39 -0.38 -2.95 16 8 C 0.49 8.55 7.69 31.98 0.25 8.80 16 9 O -0.52 -10.13 15.88 -19.40 -0.31 -10.44 16 10 O -0.34 -6.35 8.76 -41.19 -0.36 -6.72 16 11 C 0.08 1.55 4.24 37.16 0.16 1.71 16 12 C -0.06 -1.25 0.61 -154.51 -0.09 -1.35 16 13 C -0.13 -2.56 8.07 37.16 0.30 -2.26 16 14 C -0.13 -2.56 8.08 37.16 0.30 -2.26 16 15 C 0.03 0.89 4.04 -27.88 -0.11 0.77 16 16 C -0.51 -14.09 7.65 -34.44 -0.26 -14.36 16 17 H 0.06 1.67 5.68 -52.49 -0.30 1.37 16 18 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 19 N -0.90 -27.14 13.29 55.43 0.74 -26.41 16 20 Si 0.89 21.85 29.54 -169.99 -5.02 16.82 16 21 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 C -0.01 -0.08 11.53 -16.22 -0.19 -0.27 16 25 H 0.08 0.02 8.14 -51.93 -0.42 -0.40 16 26 H 0.09 0.00 8.14 -51.93 -0.42 -0.42 16 27 H 0.09 -0.04 8.14 -51.93 -0.42 -0.47 16 28 H 0.21 0.73 8.06 -52.49 -0.42 0.31 16 29 H 0.14 1.54 7.45 -52.49 -0.39 1.15 16 30 H 0.14 2.02 7.75 -52.48 -0.41 1.61 16 31 H 0.06 1.27 8.13 -51.93 -0.42 0.85 16 32 H 0.06 1.27 8.13 -51.93 -0.42 0.85 16 33 H 0.04 0.75 7.68 -51.93 -0.40 0.35 16 34 H 0.06 1.38 6.62 -51.93 -0.34 1.03 16 35 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.04 0.87 8.14 -51.94 -0.42 0.45 16 37 H 0.06 1.37 6.62 -51.93 -0.34 1.03 16 38 H 0.04 0.75 7.68 -51.93 -0.40 0.35 16 39 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 42 H 0.18 0.76 8.06 -52.49 -0.42 0.34 16 LS Contribution 357.07 15.07 5.38 5.38 Total: -1.00 -35.37 357.07 -7.97 -43.34 By element: Atomic # 1 Polarization: 3.21 SS G_CDS: -6.36 Total: -3.16 kcal Atomic # 6 Polarization: -8.80 SS G_CDS: -1.52 Total: -10.32 kcal Atomic # 7 Polarization: -35.14 SS G_CDS: 0.22 Total: -34.92 kcal Atomic # 8 Polarization: -16.48 SS G_CDS: -0.67 Total: -17.15 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -35.37 -7.97 -43.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343475271.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.626 kcal (2) G-P(sol) polarization free energy of solvation -35.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds