Wall clock time and date at job start Tue Mar 31 2020 07:03:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.35869 * 126.16923 * 2 1 4 4 N 1.30167 * 109.11813 * 180.02562 * 3 2 1 5 5 C 1.35825 * 109.00670 * 0.02562 * 4 3 2 6 6 C 1.46725 * 126.24590 * 179.97438 * 5 4 3 7 7 C 1.35300 * 120.00362 * 0.02562 * 6 5 4 8 8 C 1.41504 * 120.00350 * 180.02562 * 7 6 5 9 9 O 1.21679 * 119.99599 * 0.02562 * 8 7 6 10 10 O 1.34956 * 120.00007 * 180.02562 * 8 7 6 11 11 C 1.42905 * 116.99977 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47264 * 179.97438 * 11 10 8 13 13 C 1.53002 * 109.46817 * 299.99852 * 12 11 10 14 14 C 1.52997 * 109.47232 * 60.00091 * 12 11 10 15 15 C 1.52996 * 109.47131 * 180.02562 * 12 11 10 16 16 C 1.50703 * 109.47130 * 179.97438 * 15 12 11 17 17 H 1.07994 * 120.00100 * 0.02562 * 16 15 12 18 18 C 1.37884 * 119.99709 * 179.97438 * 16 15 12 19 19 N 1.31511 * 119.99896 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99653 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.46942 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.46979 * 120.00266 * 20 18 16 23 23 H 1.48500 * 109.46999 * 240.00165 * 20 18 16 24 24 C 1.36016 * 126.17934 * 180.29193 * 2 1 3 25 25 H 1.09003 * 109.47565 * 89.97512 * 1 2 3 26 26 H 1.09003 * 109.46632 * 209.97364 * 1 2 3 27 27 H 1.08995 * 109.47418 * 329.96561 * 1 2 3 28 28 H 1.08002 * 125.44116 * 359.96942 * 3 2 1 29 29 H 1.08002 * 119.99551 * 180.02562 * 6 5 4 30 30 H 1.08006 * 120.00235 * 0.02562 * 7 6 5 31 31 H 1.09001 * 109.47103 * 300.00271 * 11 10 8 32 32 H 1.09004 * 109.47054 * 59.99775 * 11 10 8 33 33 H 1.09002 * 109.47070 * 60.00180 * 13 12 11 34 34 H 1.09000 * 109.46986 * 180.02562 * 13 12 11 35 35 H 1.08996 * 109.47407 * 299.99780 * 13 12 11 36 36 H 1.08988 * 109.47529 * 59.99846 * 14 12 11 37 37 H 1.09000 * 109.47140 * 180.02562 * 14 12 11 38 38 H 1.09002 * 109.46777 * 299.99578 * 14 12 11 39 39 H 1.09001 * 109.46997 * 299.99574 * 15 12 11 40 40 H 1.09004 * 109.47298 * 59.99717 * 15 12 11 41 41 H 0.97007 * 119.99539 * 179.97438 * 19 18 16 42 42 H 1.08001 * 126.64028 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2669 1.0968 0.0000 4 7 3.5113 0.7152 -0.0006 5 6 3.5577 -0.6423 -0.0015 6 6 4.7699 -1.4689 -0.0029 7 6 5.9890 -0.8821 -0.0028 8 6 7.1581 -1.6793 -0.0047 9 8 7.0670 -2.8926 -0.0068 10 8 8.3741 -1.0938 -0.0040 11 6 9.5110 -1.9596 -0.0055 12 6 10.7907 -1.1211 -0.0051 13 6 10.8213 -0.2370 -1.2535 14 6 10.8225 -0.2396 1.2450 15 6 12.0078 -2.0480 -0.0073 16 6 13.2683 -1.2220 -0.0076 17 1 13.2074 -0.1438 -0.0060 18 6 14.4994 -1.8430 -0.0089 19 7 14.5736 -3.1560 -0.0104 20 14 16.0619 -0.8191 -0.0101 21 1 15.7085 0.6232 -0.0087 22 1 16.8607 -1.1338 1.2016 23 1 16.8584 -1.1329 -1.2234 24 6 2.2679 -1.0979 -0.0056 25 1 -0.3634 0.0004 -1.0277 26 1 -0.3633 -0.8903 0.5135 27 1 -0.3634 0.8896 0.5143 28 1 1.9262 2.1217 -0.0005 29 1 4.6890 -2.5459 -0.0040 30 1 6.0699 0.1950 -0.0013 31 1 9.4889 -2.5898 0.8836 32 1 9.4885 -2.5873 -0.8964 33 1 9.9541 0.4234 -1.2524 34 1 11.7332 0.3601 -1.2536 35 1 10.7987 -0.8649 -2.1441 36 1 10.8006 -0.8693 2.1343 37 1 11.7340 0.3581 1.2450 38 1 9.9554 0.4208 1.2460 39 1 11.9862 -2.6782 0.8818 40 1 11.9850 -2.6757 -0.8982 41 1 15.4398 -3.5928 -0.0117 42 1 1.9489 -2.1297 -0.0112 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001343475271.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:30 Heat of formation + Delta-G solvation = -44.236657 kcal Electronic energy + Delta-G solvation = -22185.398133 eV Core-core repulsion = 18744.898016 eV Total energy + Delta-G solvation = -3440.500117 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.91903 -41.60276 -38.88426 -36.94931 -35.72659 -34.39961 -33.83342 -30.65158 -29.31785 -28.34393 -27.96324 -27.54841 -25.65852 -24.53803 -22.37034 -21.87162 -20.27922 -19.74953 -18.96207 -18.34565 -17.78395 -17.46873 -17.21682 -16.58864 -16.49927 -15.50531 -15.25918 -15.18346 -15.02856 -14.65998 -14.25670 -14.06453 -14.04234 -13.83122 -13.82298 -13.41103 -13.02388 -12.98260 -12.70597 -12.68802 -12.32781 -12.23349 -11.93932 -11.79847 -11.66448 -11.46347 -11.30854 -11.09270 -11.02383 -10.87278 -10.52609 -10.52154 -9.08964 -8.14813 -6.22583 -0.34697 1.15092 1.42681 1.43035 1.56111 1.82107 1.82937 1.98717 2.45392 2.49723 3.19326 3.47588 3.77748 3.95389 3.95478 4.04114 4.09231 4.21814 4.23601 4.35241 4.43410 4.50781 4.55209 4.60922 4.75853 4.79783 5.01915 5.05410 5.11683 5.13149 5.17974 5.33681 5.42999 5.45030 5.47497 5.53273 5.55812 5.62639 5.75049 5.88041 6.21006 6.29370 6.79697 6.91189 6.99606 7.44646 8.98124 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.049552 B = 0.002277 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.924894 B =12296.432918 C =12659.688094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.460 5.460 3 C 0.188 3.812 4 N -0.516 5.516 5 C -0.054 4.054 6 C 0.070 3.930 7 C -0.223 4.223 8 C 0.497 3.503 9 O -0.555 6.555 10 O -0.343 6.343 11 C 0.088 3.912 12 C -0.056 4.056 13 C -0.119 4.119 14 C -0.119 4.119 15 C 0.041 3.959 16 C -0.514 4.514 17 H 0.071 0.929 18 C -0.006 4.006 19 N -0.937 5.937 20 Si 0.963 3.037 21 H -0.259 1.259 22 H -0.282 1.282 23 H -0.282 1.282 24 C 0.020 3.980 25 H 0.092 0.908 26 H 0.103 0.897 27 H 0.110 0.890 28 H 0.242 0.758 29 H 0.153 0.847 30 H 0.141 0.859 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.062 0.938 34 H 0.057 0.943 35 H 0.039 0.961 36 H 0.039 0.961 37 H 0.057 0.943 38 H 0.062 0.938 39 H -0.010 1.010 40 H -0.010 1.010 41 H 0.261 0.739 42 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.770 8.490 0.087 34.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.140 5.140 3 C -0.096 4.096 4 N -0.234 5.234 5 C -0.178 4.178 6 C 0.050 3.950 7 C -0.243 4.243 8 C 0.348 3.652 9 O -0.450 6.450 10 O -0.259 6.259 11 C 0.013 3.987 12 C -0.056 4.056 13 C -0.176 4.176 14 C -0.176 4.176 15 C 0.004 3.996 16 C -0.552 4.552 17 H 0.089 0.911 18 C -0.203 4.203 19 N -0.578 5.578 20 Si 0.788 3.212 21 H -0.182 1.182 22 H -0.208 1.208 23 H -0.208 1.208 24 C -0.119 4.119 25 H 0.111 0.889 26 H 0.122 0.878 27 H 0.129 0.871 28 H 0.258 0.742 29 H 0.171 0.829 30 H 0.159 0.841 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.076 0.924 38 H 0.081 0.919 39 H 0.009 0.991 40 H 0.008 0.992 41 H 0.069 0.931 42 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -33.135 8.575 0.089 34.227 hybrid contribution 0.736 -0.789 -0.020 1.079 sum -32.400 7.786 0.069 33.322 Atomic orbital electron populations 1.22496 0.72924 1.06913 1.05361 1.45828 1.09832 1.06031 1.52303 1.25876 0.84487 0.95247 1.03947 1.70586 1.21629 1.11574 1.19594 1.19557 0.92770 0.90366 1.15138 1.21816 0.88878 0.99113 0.85180 1.21011 0.89387 1.01156 1.12757 1.20427 0.84995 0.87022 0.72741 1.90833 1.88332 1.16844 1.48991 1.86196 1.14796 1.41297 1.83606 1.22701 0.83057 0.92064 1.00858 1.20640 0.91133 0.96197 0.97612 1.21642 1.01542 0.98928 0.95536 1.21638 1.01547 0.98934 0.95523 1.18983 0.92077 0.93885 0.94696 1.21572 0.90965 0.93709 1.48989 0.91052 1.25976 1.02969 0.96005 0.95320 1.70129 1.25441 1.09825 1.52444 0.85420 0.78972 0.79385 0.77411 1.18225 1.20812 1.20805 1.23437 0.89517 0.94770 1.04135 0.88919 0.87807 0.87127 0.74184 0.82928 0.84132 0.92856 0.92868 0.91883 0.92354 0.94223 0.94211 0.92359 0.91885 0.99149 0.99150 0.93052 0.76593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 -0.14 11.16 127.77 1.43 1.29 16 2 N -0.46 -3.59 3.14 -550.90 -1.73 -5.33 16 3 C 0.19 2.29 12.55 180.09 2.26 4.55 16 4 N -0.52 -11.21 10.87 -189.04 -2.06 -13.27 16 5 C -0.05 -1.09 6.85 40.40 0.28 -0.81 16 6 C 0.07 1.64 9.62 23.81 0.23 1.87 16 7 C -0.22 -6.47 9.57 22.40 0.21 -6.25 16 8 C 0.50 17.74 7.69 68.63 0.53 18.27 16 9 O -0.56 -22.13 15.88 19.25 0.31 -21.83 16 10 O -0.34 -13.05 8.76 -58.72 -0.51 -13.57 16 11 C 0.09 3.67 4.24 71.98 0.31 3.97 16 12 C -0.06 -2.45 0.61 -52.18 -0.03 -2.49 16 13 C -0.12 -4.84 8.07 71.98 0.58 -4.26 16 14 C -0.12 -4.84 8.08 71.98 0.58 -4.26 16 15 C 0.04 2.21 4.04 29.85 0.12 2.33 16 16 C -0.51 -29.06 7.65 25.60 0.20 -28.86 16 17 H 0.07 3.83 5.68 -2.91 -0.02 3.81 16 18 C -0.01 -0.34 5.46 84.66 0.46 0.12 16 19 N -0.94 -58.29 13.29 21.45 0.28 -58.01 16 20 Si 0.96 45.09 29.54 68.60 2.03 47.12 16 21 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 22 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 23 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 24 C 0.02 0.24 11.53 83.70 0.97 1.20 16 25 H 0.09 -0.35 8.14 -2.39 -0.02 -0.37 16 26 H 0.10 -0.48 8.14 -2.39 -0.02 -0.50 16 27 H 0.11 -0.61 8.14 -2.39 -0.02 -0.63 16 28 H 0.24 0.91 8.06 -2.91 -0.02 0.88 16 29 H 0.15 3.17 7.45 -2.91 -0.02 3.15 16 30 H 0.14 4.11 7.75 -2.91 -0.02 4.09 16 31 H 0.05 2.29 8.13 -2.39 -0.02 2.27 16 32 H 0.05 2.29 8.13 -2.38 -0.02 2.27 16 33 H 0.06 2.26 7.68 -2.39 -0.02 2.25 16 34 H 0.06 2.43 6.62 -2.39 -0.02 2.41 16 35 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.04 1.60 8.14 -2.39 -0.02 1.59 16 37 H 0.06 2.42 6.62 -2.39 -0.02 2.41 16 38 H 0.06 2.26 7.68 -2.39 -0.02 2.24 16 39 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 40 H -0.01 -0.58 8.14 -2.38 -0.02 -0.60 16 41 H 0.26 15.27 8.31 -92.70 -0.77 14.50 16 42 H 0.22 0.86 8.06 -2.91 -0.02 0.83 16 Total: -1.00 -79.33 357.07 7.43 -71.90 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: 1.00 Total: 6.29 kcal Atomic # 6 Polarization: -21.44 SS G_CDS: 8.11 Total: -13.32 kcal Atomic # 7 Polarization: -73.10 SS G_CDS: -3.50 Total: -76.60 kcal Atomic # 8 Polarization: -35.19 SS G_CDS: -0.21 Total: -35.39 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -79.33 7.43 -71.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343475271.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.665 kcal (2) G-P(sol) polarization free energy of solvation -79.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds