Wall clock time and date at job start Tue Mar 31 2020 06:39:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.47090 * 2 1 4 4 C 1.50699 * 109.46983 * 119.99426 * 2 1 3 5 5 O 1.33489 * 126.83258 * 299.98088 * 4 2 1 6 6 N 1.20659 * 113.15703 * 180.02562 * 5 4 2 7 7 C 1.30018 * 112.30200 * 359.71335 * 6 5 4 8 8 C 1.37362 * 126.82701 * 120.00587 * 4 2 1 9 9 C 1.47399 * 128.56287 * 359.95591 * 8 4 2 10 10 O 1.21607 * 120.00332 * 322.87240 * 9 8 4 11 11 N 1.34778 * 119.99934 * 142.87152 * 9 8 4 12 12 C 1.46921 * 120.63061 * 354.57187 * 11 9 8 13 13 C 1.53200 * 108.89385 * 233.51462 * 12 11 9 14 14 C 1.53076 * 109.28901 * 305.57555 * 13 12 11 15 15 C 1.50700 * 109.45110 * 181.24034 * 14 13 12 16 16 H 1.08004 * 120.00375 * 239.79007 * 15 14 13 17 17 C 1.37879 * 120.00103 * 59.78612 * 15 14 13 18 18 N 1.31517 * 119.99665 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00375 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47184 * 90.00238 * 19 17 15 21 21 H 1.48497 * 109.47234 * 210.00278 * 19 17 15 22 22 H 1.48500 * 109.47048 * 330.00509 * 19 17 15 23 23 C 1.53042 * 109.65971 * 61.15499 * 14 13 12 24 24 C 1.46927 * 120.63333 * 174.54151 * 11 9 8 25 25 H 1.08996 * 109.46963 * 179.97438 * 1 2 3 26 26 H 1.08992 * 109.47581 * 300.00333 * 1 2 3 27 27 H 1.09004 * 109.46625 * 60.00316 * 1 2 3 28 28 H 1.08995 * 109.47875 * 240.00100 * 2 1 3 29 29 H 1.09002 * 109.47470 * 179.97438 * 3 2 1 30 30 H 1.08998 * 109.47117 * 300.00100 * 3 2 1 31 31 H 1.09005 * 109.46835 * 59.99309 * 3 2 1 32 32 H 1.08001 * 127.33764 * 180.29552 * 7 6 5 33 33 H 1.09003 * 109.58608 * 353.36647 * 12 11 9 34 34 H 1.08996 * 109.59528 * 113.65466 * 12 11 9 35 35 H 1.08997 * 109.49562 * 65.37875 * 13 12 11 36 36 H 1.08999 * 109.49639 * 185.48347 * 13 12 11 37 37 H 1.08990 * 109.34967 * 301.12607 * 14 13 12 38 38 H 0.96997 * 120.00163 * 179.97438 * 18 17 15 39 39 H 1.09004 * 109.49573 * 178.74777 * 23 14 13 40 40 H 1.08992 * 109.52717 * 58.66452 * 23 14 13 41 41 H 1.08996 * 109.59164 * 246.20430 * 24 11 9 42 42 H 1.09005 * 109.58264 * 6.48535 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0322 -0.7103 1.2305 5 8 1.7956 -0.3749 2.5007 6 7 2.3212 -1.1174 3.2934 7 6 2.9872 -2.0699 2.7106 8 6 2.8251 -1.8314 1.2681 9 6 3.3729 -2.6075 0.1411 10 8 2.7090 -2.7708 -0.8645 11 7 4.6098 -3.1362 0.2252 12 6 5.4694 -2.8496 1.3817 13 6 6.8150 -2.3164 0.8796 14 6 7.4117 -3.3105 -0.1199 15 6 8.7499 -2.8041 -0.5932 16 1 8.9135 -2.6106 -1.6430 17 6 9.7653 -2.5877 0.3141 18 7 9.5662 -2.8238 1.5925 19 14 11.4242 -1.9608 -0.2726 20 1 11.4271 -0.4759 -0.2536 21 1 12.4916 -2.4693 0.6259 22 1 11.6728 -2.4386 -1.6565 23 6 6.4717 -3.4631 -1.3178 24 6 5.1240 -4.0108 -0.8376 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.8934 -0.5138 -0.8899 29 1 3.1300 1.4426 0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6765 1.9564 0.8900 32 1 3.5430 -2.8654 3.1845 33 1 4.9929 -2.1009 2.0145 34 1 5.6291 -3.7635 1.9539 35 1 6.6649 -1.3552 0.3881 36 1 7.4946 -2.1923 1.7227 37 1 7.5408 -4.2775 0.3660 38 1 10.2806 -2.6720 2.2308 39 1 6.9095 -4.1544 -2.0380 40 1 6.3225 -2.4922 -1.7899 41 1 5.2575 -5.0199 -0.4479 42 1 4.4182 -4.0302 -1.6681 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347126915.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:04 Heat of formation + Delta-G solvation = 9.683090 kcal Electronic energy + Delta-G solvation = -24177.009641 eV Core-core repulsion = 20738.847660 eV Total energy + Delta-G solvation = -3438.161981 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -44.89894 -39.66677 -36.97892 -35.99722 -33.99168 -33.35039 -31.38343 -30.71590 -30.09542 -27.36880 -26.55716 -24.69036 -23.69037 -22.75510 -22.27957 -20.91826 -19.78160 -18.51479 -17.71128 -17.34416 -16.59300 -16.17115 -15.75813 -15.27435 -14.60319 -14.56693 -14.28914 -13.75761 -13.47291 -13.42510 -13.14136 -12.83948 -12.74070 -12.41062 -12.39416 -11.81874 -11.66887 -11.57296 -11.46697 -11.34274 -10.98329 -10.95930 -10.70504 -10.47181 -10.28565 -10.17477 -9.85136 -9.59832 -9.39536 -9.22785 -8.98467 -8.42955 -8.10442 -6.07548 -4.13705 1.19542 1.84843 2.80336 3.04968 3.25589 3.33018 3.36006 3.44861 4.24020 4.28148 4.37514 4.66159 4.70388 4.86805 5.00482 5.17451 5.22374 5.42604 5.46506 5.51692 5.60777 5.67950 5.73475 5.78767 5.83985 5.88690 5.99073 6.02983 6.06773 6.09357 6.23020 6.37371 6.57847 6.81057 6.96506 7.06561 7.21121 7.60524 7.77829 7.85733 7.98175 8.17720 8.35032 8.38006 8.89670 9.51776 10.98065 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.020850 B = 0.004157 C = 0.004052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.605962 B = 6733.678540 C = 6909.143801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.020 4.020 3 C -0.150 4.150 4 C 0.040 3.960 5 O 0.092 5.908 6 N -0.358 5.358 7 C 0.025 3.975 8 C -0.246 4.246 9 C 0.592 3.408 10 O -0.549 6.549 11 N -0.588 5.588 12 C 0.097 3.903 13 C -0.123 4.123 14 C 0.048 3.952 15 C -0.513 4.513 16 H 0.055 0.945 17 C 0.062 3.938 18 N -0.892 5.892 19 Si 0.891 3.109 20 H -0.281 1.281 21 H -0.286 1.286 22 H -0.274 1.274 23 C -0.123 4.123 24 C 0.113 3.887 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.070 0.930 28 H 0.116 0.884 29 H 0.062 0.938 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.202 0.798 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.038 0.962 36 H 0.106 0.894 37 H 0.028 0.972 38 H 0.261 0.739 39 H 0.062 0.938 40 H 0.053 0.947 41 H 0.063 0.937 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.698 3.979 0.045 15.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.039 4.039 3 C -0.208 4.208 4 C -0.024 4.024 5 O 0.032 5.968 6 N -0.063 5.063 7 C -0.157 4.157 8 C -0.253 4.253 9 C 0.380 3.620 10 O -0.429 6.429 11 N -0.319 5.319 12 C -0.025 4.025 13 C -0.161 4.161 14 C 0.030 3.970 15 C -0.551 4.551 16 H 0.073 0.927 17 C -0.139 4.139 18 N -0.531 5.531 19 Si 0.719 3.281 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.161 4.161 24 C -0.009 4.009 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.089 0.911 28 H 0.134 0.866 29 H 0.081 0.919 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.219 0.781 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.057 0.943 36 H 0.124 0.876 37 H 0.046 0.954 38 H 0.071 0.929 39 H 0.081 0.919 40 H 0.071 0.929 41 H 0.081 0.919 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -15.157 4.230 0.967 15.766 hybrid contribution 1.485 -0.156 -0.647 1.628 sum -13.672 4.074 0.320 14.270 Atomic orbital electron populations 1.21835 0.92783 1.02857 1.02778 1.20019 0.97007 0.96111 0.90753 1.21907 1.01980 0.93941 1.02951 1.24718 0.95330 0.94866 0.87445 1.84511 1.55791 1.43996 1.12502 1.73647 1.12027 1.04542 1.16081 1.26447 0.99880 0.99327 0.90037 1.22130 1.07372 1.01198 0.94619 1.16867 0.81447 0.78759 0.84969 1.90740 1.59851 1.61071 1.31242 1.48069 1.13330 1.47465 1.23040 1.22268 0.93079 1.00283 0.86889 1.22031 0.92447 0.98654 1.02976 1.18649 0.92417 0.95395 0.90584 1.21197 0.96148 1.43985 0.93739 0.92658 1.24955 0.98651 0.95373 0.94930 1.69826 1.32916 1.49097 1.01249 0.86613 0.83770 0.79049 0.78702 1.20733 1.21225 1.19922 1.22005 0.93611 1.00212 1.00282 1.21769 0.96881 0.92365 0.89902 0.91915 0.91935 0.91123 0.86634 0.91882 0.91041 0.91780 0.78149 0.91208 0.91708 0.94273 0.87631 0.95390 0.92941 0.91930 0.92860 0.91860 0.90068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.17 37.15 0.34 -0.98 16 2 C -0.02 -0.22 3.29 -91.77 -0.30 -0.52 16 3 C -0.15 -1.43 9.18 37.16 0.34 -1.09 16 4 C 0.04 0.55 6.06 -34.63 -0.21 0.34 16 5 O 0.09 1.27 11.06 18.66 0.21 1.48 16 6 N -0.36 -5.20 12.01 31.81 0.38 -4.82 16 7 C 0.03 0.35 10.07 -14.73 -0.15 0.21 16 8 C -0.25 -3.76 5.52 -102.89 -0.57 -4.33 16 9 C 0.59 10.31 7.48 -12.53 -0.09 10.22 16 10 O -0.55 -10.53 15.27 5.27 0.08 -10.45 16 11 N -0.59 -10.32 2.97 -174.04 -0.52 -10.84 16 12 C 0.10 1.70 5.63 -3.71 -0.02 1.68 16 13 C -0.12 -2.66 5.16 -26.59 -0.14 -2.80 16 14 C 0.05 1.11 2.06 -91.71 -0.19 0.92 16 15 C -0.51 -13.40 8.56 -34.44 -0.29 -13.70 16 16 H 0.06 1.45 7.74 -52.48 -0.41 1.04 16 17 C 0.06 1.64 5.30 -17.82 -0.09 1.54 16 18 N -0.89 -24.09 11.30 55.43 0.63 -23.47 16 19 Si 0.89 20.60 29.54 -169.99 -5.02 15.58 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 23 C -0.12 -2.43 5.30 -26.61 -0.14 -2.57 16 24 C 0.11 1.97 6.44 -3.71 -0.02 1.95 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.12 1.50 6.73 -51.93 -0.35 1.15 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.20 2.35 7.45 -52.49 -0.39 1.96 16 33 H 0.07 1.12 4.64 -51.93 -0.24 0.88 16 34 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 35 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.11 2.56 6.03 -51.93 -0.31 2.24 16 37 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 39 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 40 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 42 H 0.08 1.39 6.99 -51.93 -0.36 1.03 16 LS Contribution 338.30 15.07 5.10 5.10 Total: -1.00 -28.72 338.30 -6.96 -35.68 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -6.27 Total: 0.87 kcal Atomic # 6 Polarization: -7.59 SS G_CDS: -1.54 Total: -9.13 kcal Atomic # 7 Polarization: -39.62 SS G_CDS: 0.49 Total: -39.13 kcal Atomic # 8 Polarization: -9.26 SS G_CDS: 0.29 Total: -8.97 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -28.72 -6.96 -35.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347126915.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.363 kcal (2) G-P(sol) polarization free energy of solvation -28.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds