Wall clock time and date at job start Tue Mar 31 2020 06:39:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.47090 * 2 1 4 4 C 1.50699 * 109.46983 * 119.99426 * 2 1 3 5 5 O 1.33489 * 126.83258 * 299.98088 * 4 2 1 6 6 N 1.20659 * 113.15703 * 180.02562 * 5 4 2 7 7 C 1.30018 * 112.30200 * 359.71335 * 6 5 4 8 8 C 1.37362 * 126.82701 * 120.00587 * 4 2 1 9 9 C 1.47399 * 128.56287 * 359.95591 * 8 4 2 10 10 O 1.21607 * 120.00332 * 322.87240 * 9 8 4 11 11 N 1.34778 * 119.99934 * 142.87152 * 9 8 4 12 12 C 1.46921 * 120.63061 * 354.57187 * 11 9 8 13 13 C 1.53200 * 108.89385 * 233.51462 * 12 11 9 14 14 C 1.53076 * 109.28901 * 305.57555 * 13 12 11 15 15 C 1.50700 * 109.45110 * 181.24034 * 14 13 12 16 16 H 1.08004 * 120.00375 * 239.79007 * 15 14 13 17 17 C 1.37879 * 120.00103 * 59.78612 * 15 14 13 18 18 N 1.31517 * 119.99665 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00375 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47184 * 90.00238 * 19 17 15 21 21 H 1.48497 * 109.47234 * 210.00278 * 19 17 15 22 22 H 1.48500 * 109.47048 * 330.00509 * 19 17 15 23 23 C 1.53042 * 109.65971 * 61.15499 * 14 13 12 24 24 C 1.46927 * 120.63333 * 174.54151 * 11 9 8 25 25 H 1.08996 * 109.46963 * 179.97438 * 1 2 3 26 26 H 1.08992 * 109.47581 * 300.00333 * 1 2 3 27 27 H 1.09004 * 109.46625 * 60.00316 * 1 2 3 28 28 H 1.08995 * 109.47875 * 240.00100 * 2 1 3 29 29 H 1.09002 * 109.47470 * 179.97438 * 3 2 1 30 30 H 1.08998 * 109.47117 * 300.00100 * 3 2 1 31 31 H 1.09005 * 109.46835 * 59.99309 * 3 2 1 32 32 H 1.08001 * 127.33764 * 180.29552 * 7 6 5 33 33 H 1.09003 * 109.58608 * 353.36647 * 12 11 9 34 34 H 1.08996 * 109.59528 * 113.65466 * 12 11 9 35 35 H 1.08997 * 109.49562 * 65.37875 * 13 12 11 36 36 H 1.08999 * 109.49639 * 185.48347 * 13 12 11 37 37 H 1.08990 * 109.34967 * 301.12607 * 14 13 12 38 38 H 0.96997 * 120.00163 * 179.97438 * 18 17 15 39 39 H 1.09004 * 109.49573 * 178.74777 * 23 14 13 40 40 H 1.08992 * 109.52717 * 58.66452 * 23 14 13 41 41 H 1.08996 * 109.59164 * 246.20430 * 24 11 9 42 42 H 1.09005 * 109.58264 * 6.48535 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0322 -0.7103 1.2305 5 8 1.7956 -0.3749 2.5007 6 7 2.3212 -1.1174 3.2934 7 6 2.9872 -2.0699 2.7106 8 6 2.8251 -1.8314 1.2681 9 6 3.3729 -2.6075 0.1411 10 8 2.7090 -2.7708 -0.8645 11 7 4.6098 -3.1362 0.2252 12 6 5.4694 -2.8496 1.3817 13 6 6.8150 -2.3164 0.8796 14 6 7.4117 -3.3105 -0.1199 15 6 8.7499 -2.8041 -0.5932 16 1 8.9135 -2.6106 -1.6430 17 6 9.7653 -2.5877 0.3141 18 7 9.5662 -2.8238 1.5925 19 14 11.4242 -1.9608 -0.2726 20 1 11.4271 -0.4759 -0.2536 21 1 12.4916 -2.4693 0.6259 22 1 11.6728 -2.4386 -1.6565 23 6 6.4717 -3.4631 -1.3178 24 6 5.1240 -4.0108 -0.8376 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.8934 -0.5138 -0.8899 29 1 3.1300 1.4426 0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6765 1.9564 0.8900 32 1 3.5430 -2.8654 3.1845 33 1 4.9929 -2.1009 2.0145 34 1 5.6291 -3.7635 1.9539 35 1 6.6649 -1.3552 0.3881 36 1 7.4946 -2.1923 1.7227 37 1 7.5408 -4.2775 0.3660 38 1 10.2806 -2.6720 2.2308 39 1 6.9095 -4.1544 -2.0380 40 1 6.3225 -2.4922 -1.7899 41 1 5.2575 -5.0199 -0.4479 42 1 4.4182 -4.0302 -1.6681 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347126915.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:02 Heat of formation + Delta-G solvation = -5.224765 kcal Electronic energy + Delta-G solvation = -24177.656094 eV Core-core repulsion = 20738.847660 eV Total energy + Delta-G solvation = -3438.808434 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -46.00840 -41.09404 -38.50049 -36.94947 -35.48677 -34.81427 -33.01028 -31.98984 -31.57824 -28.26329 -28.09762 -26.14181 -24.78858 -24.36162 -23.67901 -22.11483 -21.23438 -19.89768 -18.94129 -18.66858 -18.24097 -17.49745 -17.14479 -16.53568 -16.36992 -15.86501 -15.40489 -14.98299 -14.79466 -14.71042 -14.52278 -14.29123 -14.20625 -13.93485 -13.33722 -13.12772 -13.06924 -12.81921 -12.79079 -12.48064 -12.41813 -12.26497 -12.15953 -12.00440 -11.86345 -11.54156 -11.42101 -11.18957 -11.01998 -10.76818 -10.51576 -10.40129 -9.61501 -8.08605 -6.21310 0.06472 0.72021 1.40942 1.43551 1.51952 1.64881 1.76013 2.14350 2.43907 3.13601 3.18596 3.22866 3.50597 3.74727 3.96530 4.04858 4.06193 4.22223 4.26547 4.36377 4.42741 4.54165 4.56268 4.67551 4.74039 4.76592 4.85442 4.87693 4.90778 4.94685 5.08355 5.17921 5.21683 5.29782 5.30759 5.40490 5.50490 5.63515 5.97790 6.10196 6.34898 6.39288 6.88238 6.98578 7.09093 7.46595 8.94862 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.020850 B = 0.004157 C = 0.004052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.605962 B = 6733.678540 C = 6909.143801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.022 4.022 3 C -0.147 4.147 4 C 0.055 3.945 5 O 0.095 5.905 6 N -0.370 5.370 7 C 0.032 3.968 8 C -0.276 4.276 9 C 0.596 3.404 10 O -0.569 6.569 11 N -0.591 5.591 12 C 0.110 3.890 13 C -0.114 4.114 14 C 0.045 3.955 15 C -0.534 4.534 16 H 0.048 0.952 17 C 0.019 3.981 18 N -0.912 5.912 19 Si 0.946 3.054 20 H -0.279 1.279 21 H -0.283 1.283 22 H -0.271 1.271 23 C -0.113 4.113 24 C 0.118 3.882 25 H 0.051 0.949 26 H 0.073 0.927 27 H 0.091 0.909 28 H 0.098 0.902 29 H 0.046 0.954 30 H 0.092 0.908 31 H 0.074 0.926 32 H 0.222 0.778 33 H 0.087 0.913 34 H 0.077 0.923 35 H 0.023 0.977 36 H 0.080 0.920 37 H 0.008 0.992 38 H 0.261 0.739 39 H 0.068 0.932 40 H 0.041 0.959 41 H 0.078 0.922 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.719 4.578 0.078 16.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.042 4.042 3 C -0.204 4.204 4 C -0.010 4.010 5 O 0.036 5.964 6 N -0.076 5.076 7 C -0.151 4.151 8 C -0.284 4.284 9 C 0.385 3.615 10 O -0.450 6.450 11 N -0.322 5.322 12 C -0.012 4.012 13 C -0.152 4.152 14 C 0.027 3.973 15 C -0.572 4.572 16 H 0.066 0.934 17 C -0.180 4.180 18 N -0.551 5.551 19 Si 0.773 3.227 20 H -0.205 1.205 21 H -0.209 1.209 22 H -0.196 1.196 23 C -0.151 4.151 24 C -0.004 4.004 25 H 0.070 0.930 26 H 0.092 0.908 27 H 0.110 0.890 28 H 0.116 0.884 29 H 0.066 0.934 30 H 0.111 0.889 31 H 0.093 0.907 32 H 0.238 0.762 33 H 0.105 0.895 34 H 0.095 0.905 35 H 0.042 0.958 36 H 0.098 0.902 37 H 0.026 0.974 38 H 0.070 0.930 39 H 0.087 0.913 40 H 0.060 0.940 41 H 0.096 0.904 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -16.190 4.837 0.998 16.927 hybrid contribution 1.790 -0.322 -0.687 1.944 sum -14.400 4.515 0.311 15.095 Atomic orbital electron populations 1.21833 0.90814 1.02704 1.04420 1.20159 0.98572 0.96647 0.88807 1.21908 1.00969 0.92919 1.04601 1.25189 0.93685 0.94081 0.87995 1.84511 1.55637 1.43822 1.12390 1.73638 1.12619 1.04921 1.16416 1.26750 0.99471 0.99452 0.89395 1.22035 1.09227 1.02402 0.94686 1.17042 0.81053 0.78272 0.85157 1.90723 1.60293 1.61746 1.32273 1.48061 1.13542 1.47646 1.22964 1.22084 0.90958 1.01172 0.86955 1.21793 0.94258 0.97705 1.01479 1.18623 0.92312 0.94424 0.91988 1.21552 0.97901 1.44250 0.93540 0.93384 1.25609 1.01610 0.95659 0.95122 1.69936 1.33659 1.49628 1.01901 0.85733 0.80207 0.78464 0.78303 1.20488 1.20886 1.19606 1.21850 0.94345 0.99957 0.98991 1.21704 0.95456 0.92900 0.90323 0.92953 0.90821 0.88999 0.88436 0.93438 0.88875 0.90706 0.76175 0.89459 0.90470 0.95841 0.90165 0.97400 0.92960 0.91334 0.94001 0.90358 0.89449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 9.17 71.98 0.66 -1.59 16 2 C -0.02 -0.47 3.29 -11.54 -0.04 -0.51 16 3 C -0.15 -2.51 9.18 71.98 0.66 -1.85 16 4 C 0.05 1.42 6.06 25.48 0.15 1.58 16 5 O 0.09 2.45 11.06 77.02 0.85 3.30 16 6 N -0.37 -10.14 12.01 -54.19 -0.65 -10.79 16 7 C 0.03 0.83 10.07 87.29 0.88 1.71 16 8 C -0.28 -8.13 5.52 -18.74 -0.10 -8.23 16 9 C 0.60 20.21 7.48 86.66 0.65 20.86 16 10 O -0.57 -21.42 15.27 -4.05 -0.06 -21.48 16 11 N -0.59 -20.20 2.97 -822.81 -2.45 -22.65 16 12 C 0.11 3.78 5.63 86.37 0.49 4.26 16 13 C -0.11 -4.98 5.16 30.69 0.16 -4.82 16 14 C 0.05 2.11 2.06 -11.50 -0.02 2.09 16 15 C -0.53 -28.31 8.56 25.60 0.22 -28.09 16 16 H 0.05 2.54 7.74 -2.91 -0.02 2.52 16 17 C 0.02 1.01 5.30 84.65 0.45 1.46 16 18 N -0.91 -49.73 11.30 21.45 0.24 -49.49 16 19 Si 0.95 42.36 29.54 68.60 2.03 44.39 16 20 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 21 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 22 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 23 C -0.11 -4.47 5.30 30.67 0.16 -4.31 16 24 C 0.12 4.01 6.44 86.36 0.56 4.57 16 25 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.10 2.46 6.73 -2.39 -0.02 2.44 16 29 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.09 1.19 8.14 -2.39 -0.02 1.18 16 31 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 32 H 0.22 4.68 7.45 -2.91 -0.02 4.65 16 33 H 0.09 2.69 4.64 -2.39 -0.01 2.68 16 34 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 35 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.08 3.95 6.03 -2.39 -0.01 3.94 16 37 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 38 H 0.26 13.65 8.31 -92.71 -0.77 12.88 16 39 H 0.07 2.59 8.14 -2.38 -0.02 2.57 16 40 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 41 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 42 H 0.09 2.90 6.99 -2.38 -0.02 2.88 16 Total: -1.00 -61.21 338.30 5.84 -55.37 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: 1.01 Total: 14.24 kcal Atomic # 6 Polarization: -17.76 SS G_CDS: 4.87 Total: -12.89 kcal Atomic # 7 Polarization: -80.07 SS G_CDS: -2.86 Total: -82.93 kcal Atomic # 8 Polarization: -18.97 SS G_CDS: 0.79 Total: -18.18 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.39 kcal Total: -61.21 5.84 -55.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347126915.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.143 kcal (2) G-P(sol) polarization free energy of solvation -61.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds