Wall clock time and date at job start Tue Mar 31 2020 07:29:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47318 * 2 1 4 4 C 1.50699 * 109.46671 * 240.00049 * 2 1 3 5 5 H 1.08002 * 120.00169 * 239.99716 * 4 2 1 6 6 C 1.37875 * 120.00068 * 60.00713 * 4 2 1 7 7 N 1.31517 * 120.00219 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99985 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47235 * 359.97438 * 8 6 4 10 10 H 1.48506 * 109.47604 * 119.99771 * 8 6 4 11 11 H 1.48499 * 109.47098 * 239.99642 * 8 6 4 12 12 C 1.53003 * 109.47245 * 120.00568 * 2 1 3 13 13 N 1.46501 * 109.46777 * 299.99694 * 12 2 1 14 14 C 1.34775 * 120.00307 * 179.97438 * 13 12 2 15 15 O 1.21587 * 119.99347 * 0.02562 * 14 13 12 16 16 N 1.34770 * 120.00125 * 179.97438 * 14 13 12 17 17 C 1.39952 * 119.99680 * 185.32100 * 16 14 13 18 18 C 1.38861 * 120.07220 * 33.26889 * 17 16 14 19 19 C 1.38119 * 119.93149 * 180.02562 * 18 17 16 20 20 C 1.38281 * 120.06746 * 0.02562 * 19 18 17 21 21 C 1.50701 * 119.92987 * 179.97438 * 20 19 18 22 22 O 1.42900 * 109.47032 * 89.99556 * 21 20 19 23 23 C 1.38278 * 120.14080 * 0.23284 * 20 19 18 24 24 C 1.38122 * 120.07110 * 359.48917 * 23 20 19 25 25 H 1.08998 * 109.47059 * 300.00196 * 1 2 3 26 26 H 1.09005 * 109.47173 * 59.99466 * 1 2 3 27 27 H 1.08997 * 109.47487 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47159 * 180.02562 * 3 2 1 29 29 H 1.09003 * 109.47161 * 299.99910 * 3 2 1 30 30 H 1.09003 * 109.46982 * 60.00310 * 3 2 1 31 31 H 0.96998 * 120.00054 * 180.02562 * 7 6 4 32 32 H 1.08997 * 109.47107 * 179.97438 * 12 2 1 33 33 H 1.08997 * 109.47007 * 59.99548 * 12 2 1 34 34 H 0.97002 * 119.99991 * 0.02562 * 13 12 2 35 35 H 0.96996 * 120.00387 * 5.31986 * 16 14 13 36 36 H 1.08003 * 120.03666 * 359.97438 * 18 17 16 37 37 H 1.08001 * 119.96699 * 180.02562 * 19 18 17 38 38 H 1.09000 * 109.46890 * 330.00112 * 21 20 19 39 39 H 1.08998 * 109.47110 * 210.00329 * 21 20 19 40 40 H 0.96697 * 113.99528 * 179.97438 * 22 21 20 41 41 H 1.08003 * 119.96396 * 179.72894 * 23 20 19 42 42 H 1.07997 * 120.03551 * 180.25448 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.6531 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4827 7 7 0.9428 0.8299 -2.6034 8 14 2.3223 -1.1195 -4.0080 9 1 3.1481 -2.2857 -3.6039 10 1 1.1676 -1.5865 -4.8167 11 1 3.1471 -0.1857 -4.8161 12 6 2.0400 -0.7214 1.2492 13 7 1.5517 -0.0308 2.4454 14 6 1.8768 -0.4915 3.6695 15 8 2.5758 -1.4801 3.7809 16 7 1.4280 0.1441 4.7699 17 6 1.8551 -0.2661 6.0380 18 6 3.1381 -0.7680 6.2115 19 6 3.5564 -1.1725 7.4641 20 6 2.6987 -1.0786 8.5447 21 6 3.1580 -1.5214 9.9100 22 8 3.7559 -0.4175 10.5926 23 6 1.4186 -0.5843 8.3742 24 6 0.9962 -0.1728 7.1252 25 1 -0.3633 0.5139 0.8899 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1300 1.4424 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 0.7082 1.1611 -3.4844 32 1 3.1300 -0.7218 1.2489 33 1 1.6766 -1.7490 1.2491 34 1 0.9937 0.7577 2.3564 35 1 0.8091 0.8858 4.6830 36 1 3.8081 -0.8427 5.3676 37 1 4.5543 -1.5625 7.5998 38 1 3.8894 -2.3228 9.8050 39 1 2.3031 -1.8824 10.4816 40 1 4.0750 -0.6302 11.4803 41 1 0.7496 -0.5164 9.2194 42 1 -0.0023 0.2170 6.9935 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347816560.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:29:34 Heat of formation + Delta-G solvation = -57.005206 kcal Electronic energy + Delta-G solvation = -22768.097313 eV Core-core repulsion = 19327.043510 eV Total energy + Delta-G solvation = -3441.053803 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.48498 -38.94094 -37.03265 -36.36379 -34.52507 -33.37290 -31.13454 -30.97390 -30.12730 -26.15057 -25.75670 -25.42033 -24.52588 -23.01476 -21.61935 -20.49933 -18.86260 -18.35777 -17.69761 -17.47851 -15.94817 -15.84248 -15.68889 -14.99103 -14.79331 -14.65220 -14.06138 -13.90408 -13.72559 -13.38907 -13.14479 -12.91770 -12.89381 -12.56473 -12.22217 -11.48381 -11.36907 -11.29992 -11.22566 -10.91162 -10.67715 -10.44423 -10.34341 -10.25391 -10.20808 -9.84180 -9.66630 -9.36048 -8.92993 -8.81461 -8.55056 -8.38552 -7.95776 -6.04553 -4.14526 1.20461 1.40705 2.87955 3.26049 3.33008 3.34842 3.39753 3.76058 4.30148 4.35752 4.53746 4.70695 4.81746 4.99961 5.05700 5.15891 5.22511 5.36593 5.57759 5.66582 5.95742 6.12321 6.21259 6.30554 6.33966 6.46920 6.53207 6.57685 6.73768 6.79078 6.85468 6.98388 6.99239 7.06018 7.19625 7.33420 7.34266 7.52706 7.67673 7.98162 8.08605 8.27056 8.36888 8.81639 8.87808 9.51503 10.96978 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.044552 B = 0.002629 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.331650 B =10649.535170 C =10954.355026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.056 3.944 3 C -0.131 4.131 4 C -0.505 4.505 5 H 0.059 0.941 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.894 3.106 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.284 1.284 12 C 0.149 3.851 13 N -0.726 5.726 14 C 0.696 3.304 15 O -0.580 6.580 16 N -0.693 5.693 17 C 0.187 3.813 18 C -0.125 4.125 19 C -0.078 4.078 20 C -0.124 4.124 21 C 0.122 3.878 22 O -0.569 6.569 23 C -0.079 4.079 24 C -0.158 4.158 25 H 0.005 0.995 26 H 0.086 0.914 27 H 0.027 0.973 28 H 0.027 0.973 29 H 0.086 0.914 30 H 0.006 0.994 31 H 0.259 0.741 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.396 0.604 35 H 0.405 0.595 36 H 0.140 0.860 37 H 0.123 0.877 38 H 0.053 0.947 39 H 0.052 0.948 40 H 0.377 0.623 41 H 0.123 0.877 42 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.009 -0.056 21.505 21.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.055 3.945 3 C -0.189 4.189 4 C -0.543 4.543 5 H 0.077 0.923 6 C -0.136 4.136 7 N -0.525 5.525 8 Si 0.722 3.278 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.211 1.211 12 C 0.026 3.974 13 N -0.380 5.380 14 C 0.396 3.604 15 O -0.458 6.458 16 N -0.341 5.341 17 C 0.091 3.909 18 C -0.145 4.145 19 C -0.097 4.097 20 C -0.125 4.125 21 C 0.044 3.956 22 O -0.374 6.374 23 C -0.098 4.098 24 C -0.179 4.179 25 H 0.024 0.976 26 H 0.104 0.896 27 H 0.046 0.954 28 H 0.046 0.954 29 H 0.104 0.896 30 H 0.024 0.976 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.231 0.769 35 H 0.240 0.760 36 H 0.157 0.843 37 H 0.141 0.859 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.224 0.776 41 H 0.141 0.859 42 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 0.406 -0.545 20.737 20.748 hybrid contribution -0.225 -0.016 -0.506 0.554 sum 0.181 -0.561 20.231 20.239 Atomic orbital electron populations 1.21831 0.97744 0.99223 1.00050 1.18377 0.92829 0.92808 0.90491 1.21831 0.98651 0.98313 1.00058 1.21009 1.31430 1.12097 0.89790 0.92315 1.24885 0.94860 0.94930 0.98895 1.69811 1.36707 1.22795 1.23154 0.86507 0.78642 0.79752 0.82932 1.19733 1.21061 1.21059 1.21668 0.98062 0.95530 0.82132 1.45566 1.55199 1.32788 1.04410 1.16071 0.80842 0.82889 0.80604 1.90908 1.42380 1.26852 1.85636 1.42789 1.50454 1.37102 1.03737 1.17583 0.92615 0.97014 0.83712 1.21243 0.94823 1.00552 0.97906 1.20901 0.98982 0.98113 0.91660 1.19493 0.94830 1.04044 0.94136 1.20928 0.96351 0.88104 0.90180 1.86595 1.80770 1.37179 1.32891 1.20721 0.95453 0.97174 0.96416 1.20822 0.99122 1.05499 0.92467 0.97578 0.89568 0.95387 0.95374 0.89575 0.97553 0.93044 0.92661 0.92694 0.76934 0.75952 0.84253 0.85878 0.92896 0.92985 0.77640 0.85909 0.85649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.90 8.08 37.16 0.30 -2.60 16 2 C 0.06 1.27 0.50 -155.66 -0.08 1.19 16 3 C -0.13 -2.90 8.08 37.15 0.30 -2.60 16 4 C -0.50 -13.07 8.01 -34.44 -0.28 -13.35 16 5 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 6 C 0.07 1.71 5.15 -17.82 -0.09 1.62 16 7 N -0.89 -23.39 9.35 55.43 0.52 -22.87 16 8 Si 0.89 20.60 29.54 -169.99 -5.02 15.58 16 9 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 C 0.15 3.12 4.50 -4.04 -0.02 3.10 16 13 N -0.73 -12.68 4.96 -65.23 -0.32 -13.01 16 14 C 0.70 12.22 8.30 -86.93 -0.72 11.50 16 15 O -0.58 -12.22 14.02 5.29 0.07 -12.15 16 16 N -0.69 -9.49 5.35 -14.23 -0.08 -9.57 16 17 C 0.19 2.60 6.28 -83.69 -0.53 2.07 16 18 C -0.12 -1.84 8.66 -39.39 -0.34 -2.18 16 19 C -0.08 -0.98 9.69 -39.61 -0.38 -1.37 16 20 C -0.12 -1.41 5.51 -104.59 -0.58 -1.99 16 21 C 0.12 1.03 7.17 36.01 0.26 1.29 16 22 O -0.57 -5.12 13.64 -35.23 -0.48 -5.60 16 23 C -0.08 -0.85 9.69 -39.61 -0.38 -1.24 16 24 C -0.16 -1.81 9.96 -39.39 -0.39 -2.21 16 25 H 0.01 0.10 6.86 -51.93 -0.36 -0.25 16 26 H 0.09 2.12 6.07 -51.93 -0.32 1.80 16 27 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.09 2.12 6.07 -51.93 -0.32 1.80 16 30 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 31 H 0.26 6.61 8.31 -40.82 -0.34 6.27 16 32 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 34 H 0.40 6.12 6.18 -40.82 -0.25 5.87 16 35 H 0.41 4.20 8.83 -40.82 -0.36 3.84 16 36 H 0.14 2.32 6.41 -52.48 -0.34 1.98 16 37 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 38 H 0.05 0.38 8.08 -51.93 -0.42 -0.04 16 39 H 0.05 0.35 8.08 -51.93 -0.42 -0.07 16 40 H 0.38 1.44 9.12 45.56 0.42 1.86 16 41 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 42 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 LS Contribution 343.14 15.07 5.17 5.17 Total: -1.00 -30.96 343.14 -8.29 -39.25 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: -5.22 Total: 9.96 kcal Atomic # 6 Polarization: -3.83 SS G_CDS: -2.93 Total: -6.76 kcal Atomic # 7 Polarization: -45.57 SS G_CDS: 0.12 Total: -45.45 kcal Atomic # 8 Polarization: -17.34 SS G_CDS: -0.41 Total: -17.75 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.96 -8.29 -39.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347816560.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.755 kcal (2) G-P(sol) polarization free energy of solvation -30.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds