Wall clock time and date at job start Tue Mar 31 2020 07:29:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47318 * 2 1 4 4 C 1.50699 * 109.46671 * 240.00049 * 2 1 3 5 5 H 1.08002 * 120.00169 * 239.99716 * 4 2 1 6 6 C 1.37875 * 120.00068 * 60.00713 * 4 2 1 7 7 N 1.31517 * 120.00219 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99985 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47235 * 359.97438 * 8 6 4 10 10 H 1.48506 * 109.47604 * 119.99771 * 8 6 4 11 11 H 1.48499 * 109.47098 * 239.99642 * 8 6 4 12 12 C 1.53003 * 109.47245 * 120.00568 * 2 1 3 13 13 N 1.46501 * 109.46777 * 299.99694 * 12 2 1 14 14 C 1.34775 * 120.00307 * 179.97438 * 13 12 2 15 15 O 1.21587 * 119.99347 * 0.02562 * 14 13 12 16 16 N 1.34770 * 120.00125 * 179.97438 * 14 13 12 17 17 C 1.39952 * 119.99680 * 185.32100 * 16 14 13 18 18 C 1.38861 * 120.07220 * 33.26889 * 17 16 14 19 19 C 1.38119 * 119.93149 * 180.02562 * 18 17 16 20 20 C 1.38281 * 120.06746 * 0.02562 * 19 18 17 21 21 C 1.50701 * 119.92987 * 179.97438 * 20 19 18 22 22 O 1.42900 * 109.47032 * 89.99556 * 21 20 19 23 23 C 1.38278 * 120.14080 * 0.23284 * 20 19 18 24 24 C 1.38122 * 120.07110 * 359.48917 * 23 20 19 25 25 H 1.08998 * 109.47059 * 300.00196 * 1 2 3 26 26 H 1.09005 * 109.47173 * 59.99466 * 1 2 3 27 27 H 1.08997 * 109.47487 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47159 * 180.02562 * 3 2 1 29 29 H 1.09003 * 109.47161 * 299.99910 * 3 2 1 30 30 H 1.09003 * 109.46982 * 60.00310 * 3 2 1 31 31 H 0.96998 * 120.00054 * 180.02562 * 7 6 4 32 32 H 1.08997 * 109.47107 * 179.97438 * 12 2 1 33 33 H 1.08997 * 109.47007 * 59.99548 * 12 2 1 34 34 H 0.97002 * 119.99991 * 0.02562 * 13 12 2 35 35 H 0.96996 * 120.00387 * 5.31986 * 16 14 13 36 36 H 1.08003 * 120.03666 * 359.97438 * 18 17 16 37 37 H 1.08001 * 119.96699 * 180.02562 * 19 18 17 38 38 H 1.09000 * 109.46890 * 330.00112 * 21 20 19 39 39 H 1.08998 * 109.47110 * 210.00329 * 21 20 19 40 40 H 0.96697 * 113.99528 * 179.97438 * 22 21 20 41 41 H 1.08003 * 119.96396 * 179.72894 * 23 20 19 42 42 H 1.07997 * 120.03551 * 180.25448 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.6531 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4827 7 7 0.9428 0.8299 -2.6034 8 14 2.3223 -1.1195 -4.0080 9 1 3.1481 -2.2857 -3.6039 10 1 1.1676 -1.5865 -4.8167 11 1 3.1471 -0.1857 -4.8161 12 6 2.0400 -0.7214 1.2492 13 7 1.5517 -0.0308 2.4454 14 6 1.8768 -0.4915 3.6695 15 8 2.5758 -1.4801 3.7809 16 7 1.4280 0.1441 4.7699 17 6 1.8551 -0.2661 6.0380 18 6 3.1381 -0.7680 6.2115 19 6 3.5564 -1.1725 7.4641 20 6 2.6987 -1.0786 8.5447 21 6 3.1580 -1.5214 9.9100 22 8 3.7559 -0.4175 10.5926 23 6 1.4186 -0.5843 8.3742 24 6 0.9962 -0.1728 7.1252 25 1 -0.3633 0.5139 0.8899 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1300 1.4424 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 0.7082 1.1611 -3.4844 32 1 3.1300 -0.7218 1.2489 33 1 1.6766 -1.7490 1.2491 34 1 0.9937 0.7577 2.3564 35 1 0.8091 0.8858 4.6830 36 1 3.8081 -0.8427 5.3676 37 1 4.5543 -1.5625 7.5998 38 1 3.8894 -2.3228 9.8050 39 1 2.3031 -1.8824 10.4816 40 1 4.0750 -0.6302 11.4803 41 1 0.7496 -0.5164 9.2194 42 1 -0.0023 0.2170 6.9935 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347816560.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:29:33 Heat of formation + Delta-G solvation = -78.772786 kcal Electronic energy + Delta-G solvation = -22769.041226 eV Core-core repulsion = 19327.043510 eV Total energy + Delta-G solvation = -3441.997716 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.71436 -40.03062 -38.34053 -37.47850 -35.69589 -35.04876 -32.82655 -31.90036 -31.22324 -27.57363 -27.56471 -27.09592 -25.87771 -24.00079 -22.70648 -21.70613 -20.62440 -19.70043 -18.63545 -18.29263 -17.79420 -16.95506 -16.72313 -16.59844 -16.21054 -15.97450 -15.34204 -14.96535 -14.82247 -14.70117 -14.63573 -14.15337 -14.03163 -13.91948 -13.55456 -13.21287 -13.11601 -12.71237 -12.57355 -12.27750 -12.24838 -12.18674 -12.13036 -11.49792 -11.43188 -11.27932 -11.12106 -10.90688 -10.70528 -10.40632 -10.03044 -9.86868 -9.01714 -8.02914 -6.18262 0.24882 0.47029 1.41225 1.45431 1.54118 1.62980 2.03453 2.45771 2.79112 3.20978 3.25256 3.65759 3.89941 4.04579 4.22743 4.30746 4.39880 4.47068 4.51510 4.55646 4.66929 4.71633 4.77056 4.97039 5.05480 5.06612 5.10431 5.19588 5.27859 5.34517 5.34823 5.53781 5.58404 5.65994 5.67017 5.67604 5.99362 6.07569 6.15048 6.21322 6.43187 6.86062 6.97208 7.00145 7.47476 7.49668 8.96255 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.044552 B = 0.002629 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.331650 B =10649.535170 C =10954.355026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.052 3.948 3 C -0.121 4.121 4 C -0.526 4.526 5 H 0.045 0.955 6 C 0.028 3.972 7 N -0.899 5.899 8 Si 0.945 3.055 9 H -0.276 1.276 10 H -0.281 1.281 11 H -0.282 1.282 12 C 0.167 3.833 13 N -0.718 5.718 14 C 0.696 3.304 15 O -0.619 6.619 16 N -0.675 5.675 17 C 0.160 3.840 18 C -0.150 4.150 19 C -0.090 4.090 20 C -0.127 4.127 21 C 0.122 3.878 22 O -0.590 6.590 23 C -0.079 4.079 24 C -0.150 4.150 25 H 0.038 0.962 26 H 0.062 0.938 27 H 0.018 0.982 28 H 0.018 0.982 29 H 0.063 0.937 30 H 0.037 0.963 31 H 0.260 0.740 32 H 0.038 0.962 33 H 0.038 0.962 34 H 0.408 0.592 35 H 0.423 0.577 36 H 0.109 0.891 37 H 0.131 0.869 38 H 0.063 0.937 39 H 0.076 0.924 40 H 0.399 0.601 41 H 0.155 0.845 42 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.155 0.397 23.843 23.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.051 3.949 3 C -0.179 4.179 4 C -0.565 4.565 5 H 0.063 0.937 6 C -0.172 4.172 7 N -0.538 5.538 8 Si 0.772 3.228 9 H -0.200 1.200 10 H -0.207 1.207 11 H -0.208 1.208 12 C 0.043 3.957 13 N -0.373 5.373 14 C 0.397 3.603 15 O -0.499 6.499 16 N -0.324 5.324 17 C 0.065 3.935 18 C -0.171 4.171 19 C -0.108 4.108 20 C -0.128 4.128 21 C 0.045 3.955 22 O -0.400 6.400 23 C -0.097 4.097 24 C -0.170 4.170 25 H 0.057 0.943 26 H 0.081 0.919 27 H 0.037 0.963 28 H 0.037 0.963 29 H 0.081 0.919 30 H 0.056 0.944 31 H 0.070 0.930 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.245 0.755 35 H 0.261 0.739 36 H 0.127 0.873 37 H 0.149 0.851 38 H 0.081 0.919 39 H 0.095 0.905 40 H 0.249 0.751 41 H 0.172 0.828 42 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -0.762 -0.053 23.126 23.139 hybrid contribution 0.157 -0.162 -1.091 1.114 sum -0.605 -0.216 22.035 22.045 Atomic orbital electron populations 1.21673 0.97002 0.98744 1.00456 1.18365 0.93350 0.93029 0.90135 1.21678 0.97953 0.97844 1.00430 1.21284 1.31616 1.12121 0.91495 0.93713 1.25447 0.95177 0.95614 1.00963 1.69910 1.37017 1.23302 1.23550 0.85707 0.78121 0.78720 0.80251 1.20041 1.20716 1.20766 1.21189 0.96882 0.94782 0.82878 1.45222 1.55465 1.32991 1.03607 1.16147 0.80420 0.82581 0.81193 1.90889 1.44059 1.28749 1.86242 1.42481 1.50119 1.37051 1.02756 1.17807 0.92963 0.98578 0.84174 1.21165 0.95381 1.02555 0.97982 1.21068 0.99908 0.98375 0.91485 1.19940 0.94917 1.02762 0.95199 1.20976 0.97653 0.88027 0.88873 1.86522 1.81055 1.37725 1.34668 1.21161 0.95641 0.95866 0.97081 1.21136 0.99782 1.04337 0.91758 0.94333 0.91872 0.96255 0.96326 0.91853 0.94395 0.93028 0.94367 0.94332 0.75490 0.73878 0.87254 0.85085 0.91871 0.90549 0.75094 0.82761 0.82841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.28 8.08 71.98 0.58 -4.70 16 2 C 0.05 2.38 0.50 -52.93 -0.03 2.35 16 3 C -0.12 -5.33 8.08 71.98 0.58 -4.75 16 4 C -0.53 -27.74 8.01 25.60 0.21 -27.54 16 5 H 0.04 2.42 7.74 -2.91 -0.02 2.40 16 6 C 0.03 1.45 5.15 84.65 0.44 1.89 16 7 N -0.90 -47.64 9.35 21.45 0.20 -47.44 16 8 Si 0.95 42.59 29.54 68.60 2.03 44.62 16 9 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 10 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 11 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 12 C 0.17 7.09 4.50 86.38 0.39 7.48 16 13 N -0.72 -24.62 4.96 -478.54 -2.37 -26.99 16 14 C 0.70 24.39 8.30 179.06 1.49 25.87 16 15 O -0.62 -26.86 14.02 -3.99 -0.06 -26.91 16 16 N -0.68 -17.74 5.35 -317.18 -1.70 -19.43 16 17 C 0.16 4.30 6.28 38.14 0.24 4.54 16 18 C -0.15 -4.53 8.66 22.39 0.19 -4.34 16 19 C -0.09 -2.24 9.69 22.25 0.22 -2.03 16 20 C -0.13 -2.62 5.51 -19.84 -0.11 -2.73 16 21 C 0.12 1.71 7.17 71.24 0.51 2.22 16 22 O -0.59 -9.01 13.64 -148.98 -2.03 -11.05 16 23 C -0.08 -1.45 9.69 22.25 0.22 -1.24 16 24 C -0.15 -3.03 9.96 22.39 0.22 -2.80 16 25 H 0.04 1.39 6.86 -2.39 -0.02 1.37 16 26 H 0.06 3.08 6.07 -2.38 -0.01 3.06 16 27 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.06 3.10 6.07 -2.39 -0.01 3.09 16 30 H 0.04 1.38 6.86 -2.39 -0.02 1.36 16 31 H 0.26 13.25 8.31 -92.71 -0.77 12.48 16 32 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.41 11.81 6.18 -92.71 -0.57 11.24 16 35 H 0.42 7.82 8.83 -92.71 -0.82 7.00 16 36 H 0.11 3.90 6.41 -2.91 -0.02 3.88 16 37 H 0.13 2.88 8.06 -2.91 -0.02 2.85 16 38 H 0.06 0.75 8.08 -2.39 -0.02 0.73 16 39 H 0.08 0.71 8.08 -2.39 -0.02 0.69 16 40 H 0.40 1.93 9.12 -74.06 -0.68 1.25 16 41 H 0.15 1.86 8.06 -2.91 -0.02 1.83 16 42 H 0.15 2.17 8.06 -2.91 -0.02 2.15 16 Total: -1.00 -68.04 343.14 0.20 -67.84 By element: Atomic # 1 Polarization: 26.15 SS G_CDS: -1.01 Total: 25.15 kcal Atomic # 6 Polarization: -10.92 SS G_CDS: 5.14 Total: -5.77 kcal Atomic # 7 Polarization: -90.00 SS G_CDS: -3.87 Total: -93.87 kcal Atomic # 8 Polarization: -35.87 SS G_CDS: -2.09 Total: -37.96 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.62 kcal Total: -68.04 0.20 -67.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347816560.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.937 kcal (2) G-P(sol) polarization free energy of solvation -68.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds