Wall clock time and date at job start Tue Mar 31 2020 06:39:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47333 * 2 1 4 4 C 1.50705 * 109.47291 * 119.99936 * 2 1 3 5 5 O 1.33493 * 126.83062 * 300.02675 * 4 2 1 6 6 N 1.20655 * 113.15953 * 179.97438 * 5 4 2 7 7 C 1.30016 * 112.29747 * 0.02562 * 6 5 4 8 8 C 1.37358 * 126.82939 * 119.71085 * 4 2 1 9 9 C 1.47407 * 128.56405 * 359.96457 * 8 4 2 10 10 O 1.21608 * 119.99943 * 36.52662 * 9 8 4 11 11 N 1.34774 * 119.99752 * 216.51938 * 9 8 4 12 12 C 1.46922 * 120.63228 * 5.42256 * 11 9 8 13 13 C 1.53624 * 108.54445 * 126.36352 * 12 11 9 14 14 C 1.53037 * 109.24147 * 54.85551 * 13 12 11 15 15 C 1.53045 * 109.54046 * 298.50729 * 14 13 12 16 16 H 1.08993 * 109.50070 * 301.42031 * 15 14 13 17 17 C 1.50701 * 109.50050 * 181.31605 * 15 14 13 18 18 H 1.08001 * 119.99456 * 0.16831 * 17 15 14 19 19 C 1.37876 * 119.99928 * 180.16800 * 17 15 14 20 20 N 1.31510 * 120.00053 * 359.97438 * 19 17 15 21 21 Si 1.86792 * 119.99831 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47466 * 89.99552 * 21 19 17 23 23 H 1.48504 * 109.47002 * 209.99589 * 21 19 17 24 24 H 1.48503 * 109.47048 * 329.99414 * 21 19 17 25 25 C 1.46926 * 120.62608 * 185.69334 * 11 9 8 26 26 H 1.08994 * 109.46907 * 60.00172 * 1 2 3 27 27 H 1.08998 * 109.47028 * 299.99523 * 1 2 3 28 28 H 1.08998 * 109.46771 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47419 * 239.99661 * 2 1 3 30 30 H 1.09004 * 109.47145 * 59.99493 * 3 2 1 31 31 H 1.08994 * 109.47312 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.47030 * 300.00492 * 3 2 1 33 33 H 1.08006 * 127.32838 * 180.02562 * 7 6 5 34 34 H 1.08999 * 109.58756 * 246.19425 * 12 11 9 35 35 H 1.08994 * 109.58789 * 6.61922 * 12 11 9 36 36 H 1.08998 * 109.63570 * 294.86480 * 13 12 11 37 37 H 1.08999 * 109.45695 * 174.73843 * 13 12 11 38 38 H 1.09007 * 109.46298 * 178.49010 * 14 13 12 39 39 H 1.09003 * 109.45109 * 58.52663 * 14 13 12 40 40 H 0.96996 * 120.00368 * 180.02562 * 20 19 17 41 41 H 1.09000 * 109.59142 * 353.37713 * 25 11 9 42 42 H 1.08997 * 109.58284 * 113.80659 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 1.7950 -0.3756 2.5008 6 7 2.3200 -1.1185 3.2934 7 6 2.9916 -2.0670 2.7104 8 6 2.8206 -1.8347 1.2680 9 6 3.3626 -2.6150 0.1410 10 8 3.7265 -2.0483 -0.8716 11 7 3.4550 -3.9564 0.2328 12 6 2.9119 -4.6661 1.3990 13 6 1.9572 -5.7625 0.9026 14 6 2.6951 -6.6614 -0.0922 15 6 3.1429 -5.8314 -1.2975 16 1 2.2727 -5.3735 -1.7675 17 6 3.8411 -6.7236 -2.2912 18 1 3.9519 -7.7781 -2.0854 19 6 4.3383 -6.1938 -3.4630 20 7 4.2028 -4.9100 -3.7137 21 14 5.2030 -7.2999 -4.6951 22 1 4.2089 -7.8447 -5.6544 23 1 6.2246 -6.5147 -5.4335 24 1 5.8632 -8.4197 -3.9770 25 6 4.1062 -4.7362 -0.8286 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8899 33 1 3.5515 -2.8597 3.1845 34 1 3.7272 -5.1166 1.9649 35 1 2.3681 -3.9654 2.0324 36 1 1.0980 -5.3054 0.4118 37 1 1.6176 -6.3590 1.7494 38 1 2.0289 -7.4568 -0.4264 39 1 3.5682 -7.0987 0.3923 40 1 4.5522 -4.5373 -4.5383 41 1 4.3505 -4.0819 -1.6654 42 1 5.0169 -5.1923 -0.4406 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001521731940.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:27 Heat of formation + Delta-G solvation = 11.045046 kcal Electronic energy + Delta-G solvation = -24367.241462 eV Core-core repulsion = 20929.138539 eV Total energy + Delta-G solvation = -3438.102922 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -44.84847 -39.39554 -36.85071 -35.86525 -33.96736 -33.08280 -31.77231 -30.78002 -29.76306 -27.27522 -25.73941 -25.12444 -23.70945 -23.07843 -21.90321 -20.86499 -19.67854 -18.43462 -17.64776 -17.26769 -16.43712 -16.11485 -15.40072 -15.10887 -14.59326 -14.28701 -14.23329 -13.85561 -13.52142 -13.33083 -13.21312 -12.83080 -12.62962 -12.31739 -12.24109 -11.89731 -11.68068 -11.48822 -11.37058 -11.05764 -10.99596 -10.85487 -10.57441 -10.52961 -10.27658 -10.12956 -9.91167 -9.55625 -9.28033 -9.13866 -8.97933 -8.46329 -7.81530 -6.02563 -4.11505 1.29503 1.88611 2.88378 3.27702 3.33504 3.36861 3.38818 3.70743 4.29055 4.35108 4.41064 4.77087 4.80561 4.97314 5.12164 5.23947 5.27600 5.31469 5.45462 5.51775 5.55269 5.63027 5.69488 5.78302 5.82134 5.94101 5.95995 6.12667 6.13412 6.20641 6.26739 6.56206 6.62158 6.80941 6.93304 7.08707 7.20520 7.59638 7.82733 7.95244 8.15377 8.21651 8.34790 8.74012 8.92668 9.54383 11.02697 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.020316 B = 0.004702 C = 0.004151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.869615 B = 5953.300968 C = 6743.424641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.021 4.021 3 C -0.145 4.145 4 C 0.039 3.961 5 O 0.090 5.910 6 N -0.361 5.361 7 C 0.018 3.982 8 C -0.243 4.243 9 C 0.584 3.416 10 O -0.526 6.526 11 N -0.595 5.595 12 C 0.102 3.898 13 C -0.133 4.133 14 C -0.111 4.111 15 C 0.041 3.959 16 H 0.029 0.971 17 C -0.521 4.521 18 H 0.058 0.942 19 C 0.063 3.937 20 N -0.880 5.880 21 Si 0.892 3.108 22 H -0.281 1.281 23 H -0.286 1.286 24 H -0.274 1.274 25 C 0.113 3.887 26 H 0.071 0.929 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.120 0.880 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.199 0.801 34 H 0.064 0.936 35 H 0.073 0.927 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.052 0.948 39 H 0.050 0.950 40 H 0.264 0.736 41 H 0.125 0.875 42 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.712 7.741 10.921 14.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.041 4.041 3 C -0.202 4.202 4 C -0.025 4.025 5 O 0.030 5.970 6 N -0.066 5.066 7 C -0.164 4.164 8 C -0.251 4.251 9 C 0.370 3.630 10 O -0.403 6.403 11 N -0.326 5.326 12 C -0.022 4.022 13 C -0.171 4.171 14 C -0.149 4.149 15 C 0.021 3.979 16 H 0.047 0.953 17 C -0.560 4.560 18 H 0.077 0.923 19 C -0.140 4.140 20 N -0.517 5.517 21 Si 0.720 3.280 22 H -0.207 1.207 23 H -0.212 1.212 24 H -0.199 1.199 25 C -0.007 4.007 26 H 0.090 0.910 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.138 0.862 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.216 0.784 34 H 0.082 0.918 35 H 0.092 0.908 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.071 0.929 39 H 0.069 0.931 40 H 0.074 0.926 41 H 0.143 0.857 42 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -5.701 8.511 11.500 15.401 hybrid contribution 0.852 -1.210 -1.131 1.862 sum -4.849 7.301 10.369 13.577 Atomic orbital electron populations 1.21885 0.93049 1.02806 1.02831 1.20054 0.96559 0.96511 0.90958 1.21830 1.01986 0.93759 1.02639 1.24748 0.96356 0.94221 0.87192 1.84490 1.55912 1.43942 1.12670 1.73628 1.12063 1.04642 1.16287 1.26408 1.00547 0.99130 0.90291 1.22411 1.07720 1.00239 0.94701 1.16898 0.79010 0.82122 0.84995 1.90820 1.49404 1.69949 1.30154 1.48355 1.56822 1.05023 1.22439 1.21954 0.97027 0.94970 0.88237 1.22010 0.98417 0.97208 0.99447 1.21639 0.98659 0.97784 0.96790 1.18966 0.95226 0.92289 0.91383 0.95257 1.21072 1.37752 0.94604 1.02575 0.92338 1.25046 0.95902 0.95047 0.97980 1.69877 1.45361 1.11144 1.25362 0.86595 0.79453 0.80579 0.81398 1.20668 1.21169 1.19905 1.22371 0.94562 0.95056 0.88697 0.91013 0.91963 0.92057 0.86226 0.92101 0.91858 0.91094 0.78375 0.91817 0.90837 0.92148 0.92178 0.92937 0.93117 0.92620 0.85726 0.93699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.18 37.16 0.34 -1.19 16 2 C -0.02 -0.27 3.29 -91.77 -0.30 -0.57 16 3 C -0.14 -1.52 9.18 37.16 0.34 -1.18 16 4 C 0.04 0.56 6.06 -34.63 -0.21 0.35 16 5 O 0.09 1.26 11.06 18.65 0.21 1.46 16 6 N -0.36 -5.13 12.01 31.80 0.38 -4.75 16 7 C 0.02 0.25 10.06 -14.73 -0.15 0.10 16 8 C -0.24 -3.93 5.55 -102.89 -0.57 -4.50 16 9 C 0.58 11.65 7.49 -12.53 -0.09 11.55 16 10 O -0.53 -12.39 15.24 5.27 0.08 -12.31 16 11 N -0.59 -11.69 2.97 -173.78 -0.52 -12.20 16 12 C 0.10 1.57 5.64 -3.49 -0.02 1.55 16 13 C -0.13 -2.12 6.10 -26.39 -0.16 -2.28 16 14 C -0.11 -2.15 5.10 -26.69 -0.14 -2.29 16 15 C 0.04 0.98 2.25 -91.65 -0.21 0.77 16 16 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 17 C -0.52 -13.83 8.56 -34.44 -0.29 -14.13 16 18 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 19 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 20 N -0.88 -25.11 11.39 55.43 0.63 -24.48 16 21 Si 0.89 20.90 29.54 -169.99 -5.02 15.88 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 23 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 24 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 25 C 0.11 2.65 5.41 -3.71 -0.02 2.63 16 26 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.12 1.83 6.70 -51.93 -0.35 1.49 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.20 2.16 7.38 -52.48 -0.39 1.77 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.07 1.00 4.59 -51.93 -0.24 0.76 16 36 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 41 H 0.12 3.43 5.11 -51.93 -0.27 3.16 16 42 H 0.04 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 338.36 15.07 5.10 5.10 Total: -1.00 -30.26 338.36 -6.99 -37.24 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -6.28 Total: 1.61 kcal Atomic # 6 Polarization: -5.99 SS G_CDS: -1.57 Total: -7.56 kcal Atomic # 7 Polarization: -41.93 SS G_CDS: 0.50 Total: -41.43 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: 0.29 Total: -10.84 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.26 -6.99 -37.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001521731940.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.290 kcal (2) G-P(sol) polarization free energy of solvation -30.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.245 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds