Wall clock time and date at job start Tue Mar 31 2020 06:39:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47333 * 2 1 4 4 C 1.50705 * 109.47291 * 119.99936 * 2 1 3 5 5 O 1.33493 * 126.83062 * 300.02675 * 4 2 1 6 6 N 1.20655 * 113.15953 * 179.97438 * 5 4 2 7 7 C 1.30016 * 112.29747 * 0.02562 * 6 5 4 8 8 C 1.37358 * 126.82939 * 119.71085 * 4 2 1 9 9 C 1.47407 * 128.56405 * 359.96457 * 8 4 2 10 10 O 1.21608 * 119.99943 * 36.52662 * 9 8 4 11 11 N 1.34774 * 119.99752 * 216.51938 * 9 8 4 12 12 C 1.46922 * 120.63228 * 5.42256 * 11 9 8 13 13 C 1.53624 * 108.54445 * 126.36352 * 12 11 9 14 14 C 1.53037 * 109.24147 * 54.85551 * 13 12 11 15 15 C 1.53045 * 109.54046 * 298.50729 * 14 13 12 16 16 H 1.08993 * 109.50070 * 301.42031 * 15 14 13 17 17 C 1.50701 * 109.50050 * 181.31605 * 15 14 13 18 18 H 1.08001 * 119.99456 * 0.16831 * 17 15 14 19 19 C 1.37876 * 119.99928 * 180.16800 * 17 15 14 20 20 N 1.31510 * 120.00053 * 359.97438 * 19 17 15 21 21 Si 1.86792 * 119.99831 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47466 * 89.99552 * 21 19 17 23 23 H 1.48504 * 109.47002 * 209.99589 * 21 19 17 24 24 H 1.48503 * 109.47048 * 329.99414 * 21 19 17 25 25 C 1.46926 * 120.62608 * 185.69334 * 11 9 8 26 26 H 1.08994 * 109.46907 * 60.00172 * 1 2 3 27 27 H 1.08998 * 109.47028 * 299.99523 * 1 2 3 28 28 H 1.08998 * 109.46771 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47419 * 239.99661 * 2 1 3 30 30 H 1.09004 * 109.47145 * 59.99493 * 3 2 1 31 31 H 1.08994 * 109.47312 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.47030 * 300.00492 * 3 2 1 33 33 H 1.08006 * 127.32838 * 180.02562 * 7 6 5 34 34 H 1.08999 * 109.58756 * 246.19425 * 12 11 9 35 35 H 1.08994 * 109.58789 * 6.61922 * 12 11 9 36 36 H 1.08998 * 109.63570 * 294.86480 * 13 12 11 37 37 H 1.08999 * 109.45695 * 174.73843 * 13 12 11 38 38 H 1.09007 * 109.46298 * 178.49010 * 14 13 12 39 39 H 1.09003 * 109.45109 * 58.52663 * 14 13 12 40 40 H 0.96996 * 120.00368 * 180.02562 * 20 19 17 41 41 H 1.09000 * 109.59142 * 353.37713 * 25 11 9 42 42 H 1.08997 * 109.58284 * 113.80659 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 1.7950 -0.3756 2.5008 6 7 2.3200 -1.1185 3.2934 7 6 2.9916 -2.0670 2.7104 8 6 2.8206 -1.8347 1.2680 9 6 3.3626 -2.6150 0.1410 10 8 3.7265 -2.0483 -0.8716 11 7 3.4550 -3.9564 0.2328 12 6 2.9119 -4.6661 1.3990 13 6 1.9572 -5.7625 0.9026 14 6 2.6951 -6.6614 -0.0922 15 6 3.1429 -5.8314 -1.2975 16 1 2.2727 -5.3735 -1.7675 17 6 3.8411 -6.7236 -2.2912 18 1 3.9519 -7.7781 -2.0854 19 6 4.3383 -6.1938 -3.4630 20 7 4.2028 -4.9100 -3.7137 21 14 5.2030 -7.2999 -4.6951 22 1 4.2089 -7.8447 -5.6544 23 1 6.2246 -6.5147 -5.4335 24 1 5.8632 -8.4197 -3.9770 25 6 4.1062 -4.7362 -0.8286 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8899 33 1 3.5515 -2.8597 3.1845 34 1 3.7272 -5.1166 1.9649 35 1 2.3681 -3.9654 2.0324 36 1 1.0980 -5.3054 0.4118 37 1 1.6176 -6.3590 1.7494 38 1 2.0289 -7.4568 -0.4264 39 1 3.5682 -7.0987 0.3923 40 1 4.5522 -4.5373 -4.5383 41 1 4.3505 -4.0819 -1.6654 42 1 5.0169 -5.1923 -0.4406 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001521731940.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:25 Heat of formation + Delta-G solvation = -6.490003 kcal Electronic energy + Delta-G solvation = -24368.001839 eV Core-core repulsion = 20929.138539 eV Total energy + Delta-G solvation = -3438.863299 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -45.98250 -40.96916 -38.42851 -36.93203 -35.53378 -34.63507 -33.39850 -31.96144 -31.44523 -28.11660 -27.43233 -26.80232 -24.91910 -24.39154 -23.44907 -22.09852 -21.20330 -19.85864 -18.87948 -18.70723 -18.11245 -17.47535 -16.99544 -16.47130 -16.33837 -15.77305 -15.44229 -15.17413 -14.77292 -14.69380 -14.50619 -14.28020 -14.21588 -13.86992 -13.49657 -13.08406 -12.88557 -12.84337 -12.71390 -12.42926 -12.28882 -12.28385 -12.24865 -11.94983 -11.86965 -11.66024 -11.33907 -11.21656 -10.97541 -10.78631 -10.52551 -10.48410 -9.45899 -8.10235 -6.27240 0.08282 0.74186 1.41407 1.42797 1.53126 1.67724 1.85399 2.24764 2.43280 3.15528 3.20381 3.24606 3.54251 3.78843 3.98940 4.00626 4.05010 4.12627 4.22662 4.32839 4.53380 4.56401 4.69956 4.74685 4.74916 4.77717 4.83719 4.86887 4.88324 5.07453 5.08300 5.22561 5.25137 5.27866 5.28337 5.34571 5.52878 5.61395 5.89140 5.98988 6.32666 6.55668 6.85149 7.06896 7.18640 7.43096 8.93196 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.020316 B = 0.004702 C = 0.004151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.869615 B = 5953.300968 C = 6743.424641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.026 4.026 3 C -0.140 4.140 4 C 0.055 3.945 5 O 0.095 5.905 6 N -0.365 5.365 7 C 0.037 3.963 8 C -0.273 4.273 9 C 0.581 3.419 10 O -0.576 6.576 11 N -0.598 5.598 12 C 0.098 3.902 13 C -0.126 4.126 14 C -0.105 4.105 15 C 0.039 3.961 16 H -0.015 1.015 17 C -0.536 4.536 18 H 0.062 0.938 19 C 0.012 3.988 20 N -0.914 5.914 21 Si 0.956 3.044 22 H -0.276 1.276 23 H -0.288 1.288 24 H -0.262 1.262 25 C 0.126 3.874 26 H 0.088 0.912 27 H 0.081 0.919 28 H 0.049 0.951 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.046 0.954 32 H 0.088 0.912 33 H 0.231 0.769 34 H 0.092 0.908 35 H 0.099 0.901 36 H 0.046 0.954 37 H 0.104 0.896 38 H 0.052 0.948 39 H 0.061 0.939 40 H 0.260 0.740 41 H 0.080 0.920 42 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.391 7.296 13.401 16.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.046 4.046 3 C -0.197 4.197 4 C -0.009 4.009 5 O 0.037 5.963 6 N -0.072 5.072 7 C -0.145 4.145 8 C -0.281 4.281 9 C 0.369 3.631 10 O -0.457 6.457 11 N -0.328 5.328 12 C -0.024 4.024 13 C -0.164 4.164 14 C -0.143 4.143 15 C 0.020 3.980 16 H 0.004 0.996 17 C -0.574 4.574 18 H 0.081 0.919 19 C -0.188 4.188 20 N -0.552 5.552 21 Si 0.782 3.218 22 H -0.202 1.202 23 H -0.214 1.214 24 H -0.186 1.186 25 C 0.004 3.996 26 H 0.106 0.894 27 H 0.099 0.901 28 H 0.068 0.932 29 H 0.103 0.897 30 H 0.098 0.902 31 H 0.066 0.934 32 H 0.107 0.893 33 H 0.247 0.753 34 H 0.110 0.890 35 H 0.117 0.883 36 H 0.065 0.935 37 H 0.122 0.878 38 H 0.071 0.929 39 H 0.080 0.920 40 H 0.069 0.931 41 H 0.098 0.902 42 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -6.410 8.051 14.024 17.395 hybrid contribution 1.032 -1.050 -1.902 2.406 sum -5.378 7.001 12.122 14.996 Atomic orbital electron populations 1.21876 0.90883 1.02622 1.04619 1.20126 0.98302 0.97264 0.88916 1.21825 1.00974 0.92425 1.04493 1.25036 0.94838 0.93197 0.87860 1.84509 1.55842 1.43832 1.12097 1.73626 1.12485 1.04865 1.16231 1.26767 0.99752 0.99343 0.88644 1.22055 1.09909 1.01295 0.94829 1.17350 0.78160 0.82232 0.85342 1.90788 1.51531 1.70931 1.32494 1.48334 1.56566 1.05130 1.22814 1.22298 0.98021 0.95137 0.86937 1.21980 0.97508 0.97087 0.99837 1.21525 0.99451 0.97648 0.95657 1.18898 0.93438 0.92684 0.93008 0.99650 1.21502 1.37439 0.95130 1.03342 0.91931 1.25864 0.96739 0.96165 1.00022 1.70074 1.46569 1.12978 1.25628 0.85582 0.78276 0.78930 0.79048 1.20214 1.21385 1.18610 1.21796 0.94698 0.94309 0.88748 0.89361 0.90053 0.93216 0.89659 0.90157 0.93443 0.89337 0.75314 0.89025 0.88330 0.93535 0.87758 0.92936 0.92036 0.93101 0.90173 0.93811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.76 9.18 71.98 0.66 -2.10 16 2 C -0.03 -0.67 3.29 -11.54 -0.04 -0.71 16 3 C -0.14 -2.81 9.18 71.98 0.66 -2.15 16 4 C 0.05 1.53 6.06 25.48 0.15 1.69 16 5 O 0.10 2.43 11.06 76.99 0.85 3.29 16 6 N -0.37 -9.37 12.01 -54.20 -0.65 -10.02 16 7 C 0.04 0.92 10.06 87.29 0.88 1.79 16 8 C -0.27 -8.65 5.55 -18.74 -0.10 -8.75 16 9 C 0.58 23.87 7.49 86.66 0.65 24.52 16 10 O -0.58 -29.01 15.24 -4.06 -0.06 -29.07 16 11 N -0.60 -23.69 2.97 -821.97 -2.44 -26.12 16 12 C 0.10 2.76 5.64 86.51 0.49 3.25 16 13 C -0.13 -3.71 6.10 30.82 0.19 -3.52 16 14 C -0.11 -3.96 5.10 30.62 0.16 -3.81 16 15 C 0.04 1.93 2.25 -11.46 -0.03 1.91 16 16 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 17 C -0.54 -29.05 8.56 25.60 0.22 -28.83 16 18 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 19 C 0.01 0.65 5.30 84.66 0.45 1.10 16 20 N -0.91 -54.83 11.39 21.45 0.24 -54.58 16 21 Si 0.96 43.69 29.54 68.60 2.03 45.72 16 22 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 23 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 24 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 25 C 0.13 6.17 5.41 86.36 0.47 6.64 16 26 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.09 2.79 6.70 -2.39 -0.02 2.78 16 30 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.23 4.00 7.38 -2.91 -0.02 3.98 16 34 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.10 2.32 4.59 -2.39 -0.01 2.31 16 36 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 38 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16 39 H 0.06 2.18 8.14 -2.39 -0.02 2.17 16 40 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 41 H 0.08 4.70 5.11 -2.39 -0.01 4.69 16 42 H 0.04 2.09 8.14 -2.39 -0.02 2.07 16 Total: -1.00 -70.43 338.36 5.79 -64.64 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: 1.01 Total: 15.12 kcal Atomic # 6 Polarization: -13.78 SS G_CDS: 4.80 Total: -8.97 kcal Atomic # 7 Polarization: -87.88 SS G_CDS: -2.84 Total: -90.73 kcal Atomic # 8 Polarization: -26.58 SS G_CDS: 0.79 Total: -25.79 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -70.43 5.79 -64.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001521731940.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.152 kcal (2) G-P(sol) polarization free energy of solvation -70.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds