Wall clock time and date at job start Tue Mar 31 2020 07:01:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52988 * 1 3 3 C 1.53001 * 109.47344 * 2 1 4 4 C 1.53002 * 109.47267 * 239.99897 * 2 1 3 5 5 C 1.50707 * 109.46850 * 59.99737 * 4 2 1 6 6 H 1.08004 * 119.99780 * 0.02562 * 5 4 2 7 7 C 1.37874 * 119.99911 * 180.02562 * 5 4 2 8 8 N 1.31515 * 120.00308 * 0.02562 * 7 5 4 9 9 Si 1.86806 * 119.99998 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47186 * 59.99959 * 9 7 5 11 11 H 1.48497 * 109.47235 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.46783 * 300.00015 * 9 7 5 13 13 C 1.53004 * 109.47309 * 120.00043 * 2 1 3 14 14 N 1.46500 * 109.47087 * 299.99848 * 13 2 1 15 15 C 1.38998 * 119.99748 * 180.02562 * 14 13 2 16 16 C 1.39141 * 119.70976 * 0.27186 * 15 14 13 17 17 C 1.38293 * 119.09781 * 180.23071 * 16 15 14 18 18 C 1.38881 * 118.50529 * 359.50605 * 17 16 15 19 19 C 1.38023 * 119.33177 * 0.25125 * 18 17 16 20 20 C 1.50699 * 119.57304 * 180.02562 * 19 18 17 21 21 C 1.50705 * 109.47053 * 125.00279 * 20 19 18 22 22 O 1.20818 * 119.99869 * 359.97438 * 21 20 19 23 23 O 1.34233 * 119.99721 * 180.02562 * 21 20 19 24 24 N 1.31974 * 120.85239 * 0.02562 * 19 18 17 25 25 H 1.09003 * 109.47295 * 299.99849 * 1 2 3 26 26 H 1.08996 * 109.47401 * 59.99797 * 1 2 3 27 27 H 1.09000 * 109.47371 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47100 * 180.02562 * 3 2 1 29 29 H 1.09003 * 109.46869 * 300.00105 * 3 2 1 30 30 H 1.09003 * 109.47255 * 60.00132 * 3 2 1 31 31 H 1.08998 * 109.47317 * 179.97438 * 4 2 1 32 32 H 1.09001 * 109.47375 * 300.00492 * 4 2 1 33 33 H 0.96999 * 120.00133 * 179.97438 * 8 7 5 34 34 H 1.09004 * 109.46903 * 179.97438 * 13 2 1 35 35 H 1.09001 * 109.46620 * 59.99945 * 13 2 1 36 36 H 0.96996 * 120.00050 * 0.02562 * 14 13 2 37 37 H 1.08004 * 120.44802 * 0.02562 * 16 15 14 38 38 H 1.08002 * 120.75002 * 179.78535 * 17 16 15 39 39 H 1.08000 * 120.33609 * 180.28016 * 18 17 16 40 40 H 1.09006 * 109.46960 * 244.99962 * 20 19 18 41 41 H 1.08994 * 109.47100 * 5.00038 * 20 19 18 42 42 H 0.96701 * 116.99897 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 1.5375 -0.0108 -2.4797 6 1 0.9169 0.8675 -2.3806 7 6 1.8701 -0.4822 -3.7320 8 7 2.6255 -1.5520 -3.8527 9 14 1.2480 0.3988 -5.2572 10 1 1.7440 1.7985 -5.2573 11 1 1.7418 -0.3020 -6.4697 12 1 -0.2371 0.3998 -5.2570 13 6 2.0399 -0.7213 1.2493 14 7 1.5517 -0.0307 2.4454 15 6 1.8880 -0.5053 3.7078 16 6 2.6934 -1.6334 3.8284 17 6 3.0162 -2.0975 5.0905 18 6 2.5296 -1.4093 6.1943 19 6 1.7397 -0.2940 6.0014 20 6 1.2092 0.4572 7.1952 21 6 1.6089 1.9068 7.0947 22 8 2.2582 2.2904 6.1508 23 8 1.2442 2.7716 8.0545 24 7 1.4431 0.1231 4.7849 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 3.1300 1.4424 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9564 0.8900 31 1 3.1299 -0.7209 -1.2495 32 1 1.6766 -1.7489 -1.2493 33 1 2.8592 -1.8838 -4.7337 34 1 3.1300 -0.7216 1.2490 35 1 1.6766 -1.7489 1.2492 36 1 0.9937 0.7578 2.3565 37 1 3.0587 -2.1417 2.9482 38 1 3.6366 -2.9728 5.2151 39 1 2.7671 -1.7432 7.1935 40 1 0.1221 0.3808 7.2189 41 1 1.6235 0.0285 8.1077 42 1 1.5236 3.6910 7.9462 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609673804.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:48 Heat of formation + Delta-G solvation = -69.457667 kcal Electronic energy + Delta-G solvation = -22937.277990 eV Core-core repulsion = 19495.684208 eV Total energy + Delta-G solvation = -3441.593782 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.67181 -39.78753 -37.72974 -36.23627 -34.65106 -32.80147 -32.38475 -31.09660 -28.12047 -26.97982 -26.48049 -26.02924 -23.44690 -23.11161 -22.03004 -20.83208 -18.38253 -18.17918 -17.14466 -16.90648 -16.39401 -16.27600 -15.80124 -15.45152 -14.64653 -14.59238 -14.16927 -14.04091 -13.75563 -13.13321 -12.95718 -12.89660 -12.80390 -12.67995 -12.24298 -12.06448 -11.78720 -11.60819 -11.22863 -11.00103 -10.86861 -10.68862 -10.63090 -10.41464 -10.26507 -10.12859 -9.81926 -9.46615 -9.31666 -9.22621 -8.95696 -8.37382 -7.45993 -6.02030 -4.02945 1.26883 1.59376 2.12879 2.88518 3.31689 3.36590 3.36774 3.40705 4.03805 4.23486 4.44372 4.68205 5.02193 5.07891 5.16921 5.27166 5.31802 5.33779 5.39503 5.55946 5.57223 5.73282 5.80455 6.08753 6.11949 6.18314 6.27651 6.34827 6.36931 6.39808 6.60304 6.65308 6.69310 7.04386 7.07671 7.09653 7.28682 7.59778 7.72754 7.77611 7.85647 7.96586 8.35048 8.39926 9.01330 9.60334 11.09487 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.027905 B = 0.002993 C = 0.002791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.150881 B = 9354.317064 C =10028.555732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.070 4.070 3 C -0.127 4.127 4 C 0.037 3.963 5 C -0.512 4.512 6 H 0.059 0.941 7 C 0.057 3.943 8 N -0.896 5.896 9 Si 0.889 3.111 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.134 3.866 14 N -0.712 5.712 15 C 0.415 3.585 16 C -0.237 4.237 17 C -0.033 4.033 18 C -0.237 4.237 19 C 0.174 3.826 20 C -0.057 4.057 21 C 0.478 3.522 22 O -0.490 6.490 23 O -0.524 6.524 24 N -0.529 5.529 25 H 0.030 0.970 26 H 0.066 0.934 27 H 0.047 0.953 28 H 0.047 0.953 29 H 0.066 0.934 30 H 0.031 0.969 31 H 0.018 0.982 32 H 0.018 0.982 33 H 0.261 0.739 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.404 0.596 37 H 0.134 0.866 38 H 0.131 0.869 39 H 0.127 0.873 40 H 0.121 0.879 41 H 0.120 0.880 42 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.795 1.751 23.143 23.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.071 4.071 3 C -0.185 4.185 4 C 0.000 4.000 5 C -0.550 4.550 6 H 0.077 0.923 7 C -0.144 4.144 8 N -0.535 5.535 9 Si 0.717 3.283 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C 0.010 3.990 14 N -0.343 5.343 15 C 0.177 3.823 16 C -0.262 4.262 17 C -0.059 4.059 18 C -0.260 4.260 19 C 0.035 3.965 20 C -0.096 4.096 21 C 0.319 3.681 22 O -0.375 6.375 23 O -0.337 6.337 24 N -0.246 5.246 25 H 0.049 0.951 26 H 0.085 0.915 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.085 0.915 30 H 0.050 0.950 31 H 0.036 0.964 32 H 0.036 0.964 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.241 0.759 37 H 0.151 0.849 38 H 0.149 0.851 39 H 0.145 0.855 40 H 0.139 0.861 41 H 0.138 0.862 42 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -2.089 1.953 22.450 22.631 hybrid contribution 0.255 0.558 -0.999 1.172 sum -1.834 2.511 21.451 21.675 Atomic orbital electron populations 1.21749 0.95176 1.01095 1.00392 1.20874 0.95595 0.95953 0.94640 1.21756 1.00457 0.95854 1.00404 1.19088 0.96270 0.95152 0.89504 1.21153 1.31227 1.12078 0.90517 0.92295 1.24998 0.95283 0.95073 0.99069 1.69945 1.37008 1.23019 1.23568 0.86706 0.79178 0.79809 0.82597 1.20296 1.21379 1.20305 1.21702 0.98350 0.95784 0.83128 1.44893 1.55447 1.32547 1.01406 1.18351 0.89221 0.88761 0.85967 1.21506 1.05620 1.00103 0.99011 1.21220 0.95384 0.97633 0.91667 1.21401 1.05193 0.99730 0.99679 1.19949 0.93694 0.92203 0.90693 1.20148 1.04393 0.87585 0.97432 1.23106 0.76810 0.88902 0.79329 1.90799 1.35757 1.79004 1.31925 1.84502 1.74647 1.24414 1.50103 1.66808 1.27611 1.32599 0.97627 0.95052 0.91471 0.93435 0.93427 0.91488 0.94991 0.96376 0.96371 0.92983 0.92214 0.92189 0.75932 0.84856 0.85095 0.85472 0.86073 0.86197 0.73175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.32 8.05 37.15 0.30 -2.02 16 2 C -0.07 -1.35 0.54 -154.51 -0.08 -1.43 16 3 C -0.13 -2.38 8.05 37.16 0.30 -2.08 16 4 C 0.04 0.90 4.04 -27.88 -0.11 0.79 16 5 C -0.51 -13.59 7.65 -34.44 -0.26 -13.86 16 6 H 0.06 1.52 5.68 -52.48 -0.30 1.22 16 7 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -26.22 13.29 55.43 0.74 -25.49 16 9 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 13 C 0.13 2.26 3.78 -4.04 -0.02 2.24 16 14 N -0.71 -11.42 5.13 -60.42 -0.31 -11.73 16 15 C 0.41 6.56 7.65 -155.03 -1.19 5.37 16 16 C -0.24 -3.31 9.33 -39.23 -0.37 -3.68 16 17 C -0.03 -0.38 10.17 -39.32 -0.40 -0.78 16 18 C -0.24 -2.56 9.70 -39.42 -0.38 -2.94 16 19 C 0.17 2.17 5.76 -82.61 -0.48 1.70 16 20 C -0.06 -0.50 6.21 -29.03 -0.18 -0.68 16 21 C 0.48 5.17 8.26 36.01 0.30 5.46 16 22 O -0.49 -7.54 16.09 -18.74 -0.30 -7.84 16 23 O -0.52 -4.03 13.42 -39.26 -0.53 -4.56 16 24 N -0.53 -8.23 9.26 -8.67 -0.08 -8.31 16 25 H 0.03 0.50 6.86 -51.93 -0.36 0.14 16 26 H 0.07 1.32 6.62 -51.93 -0.34 0.97 16 27 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 28 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 29 H 0.07 1.33 6.62 -51.93 -0.34 0.99 16 30 H 0.03 0.53 6.86 -51.93 -0.36 0.17 16 31 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 34 H 0.06 1.02 7.92 -51.93 -0.41 0.60 16 35 H 0.06 1.00 7.94 -51.93 -0.41 0.58 16 36 H 0.40 6.53 6.29 -40.82 -0.26 6.28 16 37 H 0.13 1.78 6.71 -52.48 -0.35 1.43 16 38 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 39 H 0.13 0.95 7.94 -52.49 -0.42 0.54 16 40 H 0.12 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.12 0.62 7.86 -51.93 -0.41 0.21 16 42 H 0.41 1.67 9.10 45.56 0.41 2.09 16 LS Contribution 346.16 15.07 5.22 5.22 Total: -1.00 -33.18 346.16 -8.17 -41.34 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -5.21 Total: 5.54 kcal Atomic # 6 Polarization: -7.75 SS G_CDS: -2.67 Total: -10.41 kcal Atomic # 7 Polarization: -45.87 SS G_CDS: 0.35 Total: -45.52 kcal Atomic # 8 Polarization: -11.57 SS G_CDS: -0.83 Total: -12.40 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -33.18 -8.17 -41.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609673804.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.113 kcal (2) G-P(sol) polarization free energy of solvation -33.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds