Wall clock time and date at job start Tue Mar 31 2020 07:01:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52988 * 1 3 3 C 1.53001 * 109.47344 * 2 1 4 4 C 1.53002 * 109.47267 * 239.99897 * 2 1 3 5 5 C 1.50707 * 109.46850 * 59.99737 * 4 2 1 6 6 H 1.08004 * 119.99780 * 0.02562 * 5 4 2 7 7 C 1.37874 * 119.99911 * 180.02562 * 5 4 2 8 8 N 1.31515 * 120.00308 * 0.02562 * 7 5 4 9 9 Si 1.86806 * 119.99998 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47186 * 59.99959 * 9 7 5 11 11 H 1.48497 * 109.47235 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.46783 * 300.00015 * 9 7 5 13 13 C 1.53004 * 109.47309 * 120.00043 * 2 1 3 14 14 N 1.46500 * 109.47087 * 299.99848 * 13 2 1 15 15 C 1.38998 * 119.99748 * 180.02562 * 14 13 2 16 16 C 1.39141 * 119.70976 * 0.27186 * 15 14 13 17 17 C 1.38293 * 119.09781 * 180.23071 * 16 15 14 18 18 C 1.38881 * 118.50529 * 359.50605 * 17 16 15 19 19 C 1.38023 * 119.33177 * 0.25125 * 18 17 16 20 20 C 1.50699 * 119.57304 * 180.02562 * 19 18 17 21 21 C 1.50705 * 109.47053 * 125.00279 * 20 19 18 22 22 O 1.20818 * 119.99869 * 359.97438 * 21 20 19 23 23 O 1.34233 * 119.99721 * 180.02562 * 21 20 19 24 24 N 1.31974 * 120.85239 * 0.02562 * 19 18 17 25 25 H 1.09003 * 109.47295 * 299.99849 * 1 2 3 26 26 H 1.08996 * 109.47401 * 59.99797 * 1 2 3 27 27 H 1.09000 * 109.47371 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47100 * 180.02562 * 3 2 1 29 29 H 1.09003 * 109.46869 * 300.00105 * 3 2 1 30 30 H 1.09003 * 109.47255 * 60.00132 * 3 2 1 31 31 H 1.08998 * 109.47317 * 179.97438 * 4 2 1 32 32 H 1.09001 * 109.47375 * 300.00492 * 4 2 1 33 33 H 0.96999 * 120.00133 * 179.97438 * 8 7 5 34 34 H 1.09004 * 109.46903 * 179.97438 * 13 2 1 35 35 H 1.09001 * 109.46620 * 59.99945 * 13 2 1 36 36 H 0.96996 * 120.00050 * 0.02562 * 14 13 2 37 37 H 1.08004 * 120.44802 * 0.02562 * 16 15 14 38 38 H 1.08002 * 120.75002 * 179.78535 * 17 16 15 39 39 H 1.08000 * 120.33609 * 180.28016 * 18 17 16 40 40 H 1.09006 * 109.46960 * 244.99962 * 20 19 18 41 41 H 1.08994 * 109.47100 * 5.00038 * 20 19 18 42 42 H 0.96701 * 116.99897 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 1.5375 -0.0108 -2.4797 6 1 0.9169 0.8675 -2.3806 7 6 1.8701 -0.4822 -3.7320 8 7 2.6255 -1.5520 -3.8527 9 14 1.2480 0.3988 -5.2572 10 1 1.7440 1.7985 -5.2573 11 1 1.7418 -0.3020 -6.4697 12 1 -0.2371 0.3998 -5.2570 13 6 2.0399 -0.7213 1.2493 14 7 1.5517 -0.0307 2.4454 15 6 1.8880 -0.5053 3.7078 16 6 2.6934 -1.6334 3.8284 17 6 3.0162 -2.0975 5.0905 18 6 2.5296 -1.4093 6.1943 19 6 1.7397 -0.2940 6.0014 20 6 1.2092 0.4572 7.1952 21 6 1.6089 1.9068 7.0947 22 8 2.2582 2.2904 6.1508 23 8 1.2442 2.7716 8.0545 24 7 1.4431 0.1231 4.7849 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 3.1300 1.4424 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9564 0.8900 31 1 3.1299 -0.7209 -1.2495 32 1 1.6766 -1.7489 -1.2493 33 1 2.8592 -1.8838 -4.7337 34 1 3.1300 -0.7216 1.2490 35 1 1.6766 -1.7489 1.2492 36 1 0.9937 0.7578 2.3565 37 1 3.0587 -2.1417 2.9482 38 1 3.6366 -2.9728 5.2151 39 1 2.7671 -1.7432 7.1935 40 1 0.1221 0.3808 7.2189 41 1 1.6235 0.0285 8.1077 42 1 1.5236 3.6910 7.9462 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609673804.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:48 Heat of formation + Delta-G solvation = -90.807221 kcal Electronic energy + Delta-G solvation = -22938.203776 eV Core-core repulsion = 19495.684208 eV Total energy + Delta-G solvation = -3442.519568 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.56251 -40.71242 -39.17648 -37.02260 -35.97807 -34.36509 -33.63461 -32.19670 -29.32680 -28.63312 -28.02084 -27.42595 -24.95007 -24.29582 -23.10396 -21.76059 -19.82304 -19.00785 -18.40616 -18.31642 -17.75962 -17.18538 -16.67454 -16.57880 -16.33057 -15.94707 -15.47808 -15.19060 -14.94597 -14.43936 -14.36881 -14.10325 -13.96769 -13.77408 -13.67317 -13.28046 -12.88829 -12.79488 -12.67466 -12.65151 -12.42079 -12.36309 -12.23235 -12.00425 -11.63939 -11.54592 -11.04208 -11.02901 -10.88915 -10.51414 -10.50233 -10.30253 -8.56109 -8.15170 -6.22048 0.32858 0.64088 1.34959 1.41346 1.42782 1.50086 2.20874 2.24785 2.44348 3.08551 3.19297 3.38751 3.89292 3.96479 4.06054 4.14352 4.23943 4.40190 4.40536 4.52036 4.54314 4.62411 4.68932 4.70672 4.73475 4.92345 4.93534 5.06958 5.08804 5.20537 5.39446 5.44188 5.44973 5.47419 5.53376 5.71651 5.74089 5.77634 5.88451 6.11879 6.31981 6.69408 6.91830 7.09666 7.31457 7.45205 8.96886 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.027905 B = 0.002993 C = 0.002791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.150881 B = 9354.317064 C =10028.555732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.064 4.064 3 C -0.120 4.120 4 C 0.044 3.956 5 C -0.518 4.518 6 H 0.066 0.934 7 C 0.000 4.000 8 N -0.935 5.935 9 Si 0.954 3.046 10 H -0.270 1.270 11 H -0.288 1.288 12 H -0.268 1.268 13 C 0.152 3.848 14 N -0.717 5.717 15 C 0.387 3.613 16 C -0.257 4.257 17 C -0.034 4.034 18 C -0.225 4.225 19 C 0.156 3.844 20 C -0.056 4.056 21 C 0.482 3.518 22 O -0.546 6.546 23 O -0.513 6.513 24 N -0.554 5.554 25 H 0.055 0.945 26 H 0.052 0.948 27 H 0.042 0.958 28 H 0.038 0.962 29 H 0.053 0.947 30 H 0.053 0.947 31 H -0.009 1.009 32 H -0.006 1.006 33 H 0.261 0.739 34 H 0.052 0.948 35 H 0.058 0.942 36 H 0.401 0.599 37 H 0.129 0.871 38 H 0.162 0.838 39 H 0.170 0.830 40 H 0.140 0.860 41 H 0.163 0.837 42 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.536 2.066 25.784 25.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.064 4.064 3 C -0.177 4.177 4 C 0.007 3.993 5 C -0.556 4.556 6 H 0.084 0.916 7 C -0.198 4.198 8 N -0.576 5.576 9 Si 0.780 3.220 10 H -0.195 1.195 11 H -0.213 1.213 12 H -0.193 1.193 13 C 0.028 3.972 14 N -0.350 5.350 15 C 0.151 3.849 16 C -0.283 4.283 17 C -0.059 4.059 18 C -0.247 4.247 19 C 0.016 3.984 20 C -0.093 4.093 21 C 0.325 3.675 22 O -0.435 6.435 23 O -0.327 6.327 24 N -0.272 5.272 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.062 0.938 28 H 0.058 0.942 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.009 0.991 32 H 0.012 0.988 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.237 0.763 37 H 0.147 0.853 38 H 0.180 0.820 39 H 0.187 0.813 40 H 0.158 0.842 41 H 0.181 0.819 42 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges -2.848 2.285 25.157 25.421 hybrid contribution 0.502 0.458 -1.615 1.753 sum -2.346 2.743 23.542 23.817 Atomic orbital electron populations 1.21649 0.94142 1.00986 1.00851 1.20683 0.96325 0.95915 0.93509 1.21661 0.99892 0.95399 1.00765 1.18932 0.94462 0.94304 0.91618 1.21556 1.30594 1.12073 0.91383 0.91596 1.25861 0.95633 0.95849 1.02411 1.70083 1.38612 1.24714 1.24182 0.85662 0.78937 0.78756 0.78673 1.19487 1.21344 1.19339 1.21315 0.97752 0.95390 0.82784 1.44643 1.56254 1.32674 1.01382 1.18556 0.90582 0.89822 0.85897 1.21656 1.06167 1.00134 1.00304 1.21665 0.95044 0.98374 0.90843 1.21910 1.03045 0.98360 1.01398 1.20688 0.93828 0.93122 0.90717 1.20364 1.05620 0.85937 0.97380 1.23536 0.75423 0.89936 0.78561 1.90791 1.38519 1.80052 1.34147 1.84470 1.73946 1.25455 1.48806 1.66808 1.28438 1.33296 0.98640 0.92571 0.92880 0.93842 0.94235 0.92803 0.92785 0.99056 0.98780 0.93073 0.92933 0.92360 0.76288 0.85286 0.82025 0.81276 0.84231 0.81933 0.71377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.35 8.05 71.98 0.58 -3.77 16 2 C -0.06 -2.51 0.54 -52.18 -0.03 -2.53 16 3 C -0.12 -4.52 8.05 71.98 0.58 -3.94 16 4 C 0.04 2.24 4.04 29.85 0.12 2.36 16 5 C -0.52 -28.11 7.65 25.60 0.20 -27.91 16 6 H 0.07 3.42 5.68 -2.91 -0.02 3.41 16 7 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 8 N -0.93 -56.24 13.29 21.45 0.28 -55.95 16 9 Si 0.95 44.01 29.54 68.60 2.03 46.03 16 10 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 11 H -0.29 -13.16 7.11 99.48 0.71 -12.46 16 12 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 13 C 0.15 5.28 3.78 86.38 0.33 5.61 16 14 N -0.72 -23.25 5.13 -345.06 -1.77 -25.02 16 15 C 0.39 12.24 7.65 133.07 1.02 13.26 16 16 C -0.26 -7.10 9.33 22.50 0.21 -6.89 16 17 C -0.03 -0.70 10.17 22.44 0.23 -0.47 16 18 C -0.22 -4.07 9.70 22.37 0.22 -3.85 16 19 C 0.16 3.51 5.76 42.49 0.24 3.75 16 20 C -0.06 -0.77 6.21 29.10 0.18 -0.59 16 21 C 0.48 9.42 8.26 71.24 0.59 10.01 16 22 O -0.55 -16.48 16.09 21.99 0.35 -16.13 16 23 O -0.51 -6.57 13.42 -51.44 -0.69 -7.26 16 24 N -0.55 -16.81 9.26 -181.34 -1.68 -18.49 16 25 H 0.06 1.77 6.86 -2.39 -0.02 1.75 16 26 H 0.05 2.07 6.62 -2.39 -0.02 2.06 16 27 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.05 2.15 6.62 -2.39 -0.02 2.13 16 30 H 0.05 1.79 6.86 -2.39 -0.02 1.77 16 31 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 32 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 33 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 34 H 0.05 1.87 7.92 -2.38 -0.02 1.85 16 35 H 0.06 2.01 7.94 -2.39 -0.02 2.00 16 36 H 0.40 12.97 6.29 -92.71 -0.58 12.39 16 37 H 0.13 3.53 6.71 -2.91 -0.02 3.51 16 38 H 0.16 2.24 8.06 -2.91 -0.02 2.21 16 39 H 0.17 1.58 7.94 -2.91 -0.02 1.56 16 40 H 0.14 1.46 8.14 -2.38 -0.02 1.44 16 41 H 0.16 0.81 7.86 -2.39 -0.02 0.80 16 42 H 0.42 2.60 9.10 -74.06 -0.67 1.93 16 Total: -1.00 -74.45 346.16 3.24 -71.20 By element: Atomic # 1 Polarization: 20.36 SS G_CDS: -0.21 Total: 20.15 kcal Atomic # 6 Polarization: -19.46 SS G_CDS: 4.92 Total: -14.53 kcal Atomic # 7 Polarization: -96.30 SS G_CDS: -3.16 Total: -99.46 kcal Atomic # 8 Polarization: -23.05 SS G_CDS: -0.34 Total: -23.39 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.03 kcal Total: -74.45 3.24 -71.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609673804.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.603 kcal (2) G-P(sol) polarization free energy of solvation -74.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds