Wall clock time and date at job start Tue Mar 31 2020 07:02:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47346 * 2 1 4 4 C 1.53001 * 109.46637 * 239.99940 * 2 1 3 5 5 C 1.50697 * 109.47291 * 60.00213 * 4 2 1 6 6 H 1.08006 * 119.99920 * 359.97438 * 5 4 2 7 7 C 1.37876 * 120.00428 * 179.97438 * 5 4 2 8 8 N 1.31519 * 119.99563 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00432 * 180.02562 * 7 5 4 10 10 H 1.48508 * 109.47282 * 89.99593 * 9 7 5 11 11 H 1.48498 * 109.47211 * 210.00040 * 9 7 5 12 12 H 1.48506 * 109.46856 * 330.00220 * 9 7 5 13 13 C 1.53000 * 109.47233 * 120.00458 * 2 1 3 14 14 N 1.46901 * 109.46769 * 299.99531 * 13 2 1 15 15 C 1.46906 * 110.99793 * 180.02562 * 14 13 2 16 16 H 1.09003 * 109.47279 * 325.00167 * 15 14 13 17 17 C 1.50694 * 109.47106 * 85.00220 * 15 14 13 18 18 O 1.20829 * 120.00042 * 0.02562 * 17 15 14 19 19 O 1.34232 * 120.00362 * 180.02562 * 17 15 14 20 20 C 1.50701 * 109.46893 * 205.00308 * 15 14 13 21 21 C 1.38676 * 120.41635 * 140.00486 * 20 15 14 22 22 C 1.38631 * 118.41768 * 179.97438 * 21 20 15 23 23 C 1.38231 * 119.16307 * 359.97438 * 22 21 20 24 24 N 1.31860 * 120.75989 * 0.02562 * 23 22 21 25 25 C 1.31883 * 121.72767 * 359.70515 * 24 23 22 26 26 H 1.09000 * 109.46986 * 299.99746 * 1 2 3 27 27 H 1.08993 * 109.47662 * 59.99968 * 1 2 3 28 28 H 1.09002 * 109.47075 * 180.02562 * 1 2 3 29 29 H 1.08992 * 109.47554 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.47108 * 300.00289 * 3 2 1 31 31 H 1.09000 * 109.46870 * 60.00183 * 3 2 1 32 32 H 1.09001 * 109.47109 * 179.97438 * 4 2 1 33 33 H 1.09002 * 109.47508 * 299.99876 * 4 2 1 34 34 H 0.97000 * 119.99425 * 180.02562 * 8 7 5 35 35 H 1.09002 * 109.47398 * 59.99826 * 13 2 1 36 36 H 1.09001 * 109.47194 * 180.02562 * 13 2 1 37 37 H 1.00899 * 111.00283 * 303.95539 * 14 13 2 38 38 H 0.96700 * 117.00257 * 179.97438 * 19 17 15 39 39 H 1.07997 * 120.78895 * 359.97438 * 21 20 15 40 40 H 1.07994 * 120.41508 * 180.02562 * 22 21 20 41 41 H 1.07999 * 119.61774 * 179.97438 * 23 22 21 42 42 H 1.08000 * 119.61311 * 180.31785 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.5376 -0.0109 -2.4797 6 1 0.9164 0.8671 -2.3806 7 6 1.8710 -0.4816 -3.7320 8 7 2.6278 -1.5504 -3.8527 9 14 1.2489 0.3994 -5.2572 10 1 2.2273 1.4412 -5.6608 11 1 1.0841 -0.5794 -6.3617 12 1 -0.0593 1.0370 -4.9615 13 6 2.0401 -0.7213 1.2492 14 7 1.5504 -0.0288 2.4486 15 6 2.0220 -0.6947 3.6703 16 1 2.0617 -1.7714 3.5050 17 6 3.3980 -0.1889 4.0188 18 8 3.9311 0.6415 3.3215 19 8 4.0317 -0.6607 5.1041 20 6 1.0746 -0.3950 4.8033 21 6 0.7362 -1.3831 5.7155 22 6 -0.1385 -1.0618 6.7419 23 6 -0.6402 0.2237 6.8218 24 7 -0.2962 1.1381 5.9362 25 6 0.5372 0.8696 4.9500 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6768 1.9562 0.8900 32 1 3.1299 -0.7209 -1.2496 33 1 1.6766 -1.7490 -1.2493 34 1 2.8627 -1.8813 -4.7337 35 1 1.6767 -1.7490 1.2492 36 1 3.1301 -0.7209 1.2494 37 1 1.8199 0.9435 2.4401 38 1 4.9127 -0.3065 5.2867 39 1 1.1443 -2.3792 5.6283 40 1 -0.4237 -1.8064 7.4704 41 1 -1.3225 0.4819 7.6182 42 1 0.7997 1.6460 4.2467 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609673960.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:04 Heat of formation + Delta-G solvation = -66.076996 kcal Electronic energy + Delta-G solvation = -23590.312691 eV Core-core repulsion = 20148.865506 eV Total energy + Delta-G solvation = -3441.447185 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.01623 -39.91437 -37.73729 -36.29412 -35.04988 -32.76810 -32.22874 -31.09025 -27.73497 -26.72463 -26.32294 -25.03659 -23.69737 -23.32808 -22.37387 -20.92606 -18.40360 -18.15384 -17.35806 -17.15890 -16.52284 -16.21433 -16.07122 -15.24336 -14.66718 -14.48546 -14.22770 -13.96578 -13.80350 -13.35109 -13.26337 -13.00068 -12.61004 -12.51187 -12.00132 -11.94276 -11.81199 -11.71163 -11.11051 -10.96153 -10.87544 -10.77447 -10.49074 -10.30391 -10.14393 -9.98904 -9.71557 -9.63704 -9.23086 -9.02914 -8.85045 -8.53645 -8.30869 -5.95631 -3.95568 0.85769 1.08884 1.97335 2.82463 3.34539 3.41051 3.44091 3.60854 4.07964 4.21555 4.49988 4.53734 4.61679 4.75903 4.80136 5.05080 5.09669 5.30360 5.40424 5.56116 5.58279 5.71168 5.87878 5.95580 6.01277 6.16665 6.26452 6.29490 6.46683 6.48734 6.64310 6.74812 6.83027 6.96333 7.19391 7.22481 7.29176 7.38883 7.66134 7.69955 7.79526 7.84632 8.04438 8.48545 9.09552 9.67256 11.16115 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.024432 B = 0.003530 C = 0.003320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.758627 B = 7930.939102 C = 8432.389880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.056 4.056 3 C -0.128 4.128 4 C 0.034 3.966 5 C -0.506 4.506 6 H 0.060 0.940 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.888 3.112 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.274 1.274 13 C 0.063 3.937 14 N -0.651 5.651 15 C 0.141 3.859 16 H 0.126 0.874 17 C 0.452 3.548 18 O -0.503 6.503 19 O -0.515 6.515 20 C -0.120 4.120 21 C -0.055 4.055 22 C -0.175 4.175 23 C 0.098 3.902 24 N -0.485 5.485 25 C 0.126 3.874 26 H 0.042 0.958 27 H 0.056 0.944 28 H 0.040 0.960 29 H 0.043 0.957 30 H 0.065 0.935 31 H 0.032 0.968 32 H 0.013 0.987 33 H 0.015 0.985 34 H 0.259 0.741 35 H 0.071 0.929 36 H 0.034 0.966 37 H 0.354 0.646 38 H 0.406 0.594 39 H 0.137 0.863 40 H 0.136 0.864 41 H 0.155 0.845 42 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.917 -0.225 22.472 22.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.057 4.057 3 C -0.186 4.186 4 C -0.003 4.003 5 C -0.545 4.545 6 H 0.078 0.922 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.716 3.284 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.199 1.199 13 C -0.065 4.065 14 N -0.284 5.284 15 C 0.027 3.973 16 H 0.143 0.857 17 C 0.291 3.709 18 O -0.390 6.390 19 O -0.326 6.326 20 C -0.123 4.123 21 C -0.081 4.081 22 C -0.194 4.194 23 C -0.059 4.059 24 N -0.193 5.193 25 C -0.031 4.031 26 H 0.061 0.939 27 H 0.075 0.925 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.084 0.916 31 H 0.051 0.949 32 H 0.032 0.968 33 H 0.034 0.966 34 H 0.068 0.932 35 H 0.090 0.910 36 H 0.052 0.948 37 H 0.177 0.823 38 H 0.265 0.735 39 H 0.155 0.845 40 H 0.154 0.846 41 H 0.172 0.828 42 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -3.037 0.280 22.115 22.325 hybrid contribution 1.718 -0.072 -0.950 1.964 sum -1.319 0.208 21.166 21.208 Atomic orbital electron populations 1.21627 0.94864 1.00665 1.00349 1.20620 0.95850 0.95204 0.93978 1.21760 1.00094 0.96399 1.00319 1.19119 0.95977 0.95146 0.90056 1.21229 1.30751 1.11932 0.90558 0.92235 1.25012 0.95408 0.95104 0.99062 1.69969 1.37298 1.23241 1.23283 0.86657 0.79256 0.79412 0.83060 1.20822 1.21393 1.19882 1.22321 0.97336 0.98013 0.88800 1.61086 1.59959 1.07822 0.99567 1.20241 0.84250 1.01960 0.90860 0.85658 1.24933 0.89320 0.79191 0.77487 1.90775 1.66946 1.31207 1.50078 1.84574 1.35829 1.66594 1.45583 1.20333 0.99920 0.95748 0.96264 1.21446 0.94819 0.99232 0.92645 1.22100 0.99223 0.98411 0.99704 1.22823 0.97118 0.89412 0.96585 1.67757 1.12358 1.35949 1.03224 1.22583 0.91448 0.95066 0.94021 0.93934 0.92465 0.94063 0.93768 0.91647 0.94927 0.96838 0.96635 0.93178 0.91033 0.94759 0.82285 0.73511 0.84508 0.84628 0.82803 0.82847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.24 8.06 37.16 0.30 -1.94 16 2 C -0.06 -1.11 0.60 -154.51 -0.09 -1.20 16 3 C -0.13 -2.46 7.89 37.16 0.29 -2.16 16 4 C 0.03 0.87 4.04 -27.88 -0.11 0.75 16 5 C -0.51 -13.84 7.65 -34.44 -0.26 -14.11 16 6 H 0.06 1.59 5.68 -52.48 -0.30 1.29 16 7 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 8 N -0.90 -26.86 13.29 55.43 0.74 -26.12 16 9 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 12 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 13 C 0.06 1.06 4.34 -3.82 -0.02 1.05 16 14 N -0.65 -9.08 4.79 -109.18 -0.52 -9.60 16 15 C 0.14 1.63 2.72 -70.02 -0.19 1.44 16 16 H 0.13 1.29 7.69 -51.93 -0.40 0.89 16 17 C 0.45 5.48 7.44 36.00 0.27 5.74 16 18 O -0.50 -7.73 16.06 -18.75 -0.30 -8.03 16 19 O -0.52 -4.76 13.34 -39.26 -0.52 -5.28 16 20 C -0.12 -1.30 4.89 -104.48 -0.51 -1.81 16 21 C -0.05 -0.49 9.82 -39.27 -0.39 -0.88 16 22 C -0.17 -1.39 10.11 -39.44 -0.40 -1.79 16 23 C 0.10 0.91 11.18 -17.54 -0.20 0.71 16 24 N -0.48 -5.85 10.36 -13.25 -0.14 -5.99 16 25 C 0.13 1.51 10.49 -17.55 -0.18 1.32 16 26 H 0.04 0.72 7.60 -51.93 -0.39 0.33 16 27 H 0.06 1.18 6.62 -51.93 -0.34 0.83 16 28 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.06 1.34 6.62 -51.93 -0.34 1.00 16 31 H 0.03 0.54 6.57 -51.93 -0.34 0.19 16 32 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 35 H 0.07 1.17 8.06 -51.93 -0.42 0.75 16 36 H 0.03 0.61 7.62 -51.93 -0.40 0.22 16 37 H 0.35 5.14 5.16 -39.29 -0.20 4.93 16 38 H 0.41 2.22 9.10 45.56 0.41 2.64 16 39 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 40 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 41 H 0.15 0.99 8.06 -52.49 -0.42 0.57 16 42 H 0.15 1.81 7.28 -52.49 -0.38 1.43 16 LS Contribution 346.44 15.07 5.22 5.22 Total: -1.00 -32.84 346.44 -7.34 -40.18 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -5.20 Total: 4.40 kcal Atomic # 6 Polarization: -9.84 SS G_CDS: -1.59 Total: -11.43 kcal Atomic # 7 Polarization: -41.79 SS G_CDS: 0.08 Total: -41.71 kcal Atomic # 8 Polarization: -12.49 SS G_CDS: -0.83 Total: -13.31 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.84 -7.34 -40.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609673960.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.896 kcal (2) G-P(sol) polarization free energy of solvation -32.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds