Wall clock time and date at job start Tue Mar 31 2020 07:02:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47346 * 2 1 4 4 C 1.53001 * 109.46637 * 239.99940 * 2 1 3 5 5 C 1.50697 * 109.47291 * 60.00213 * 4 2 1 6 6 H 1.08006 * 119.99920 * 359.97438 * 5 4 2 7 7 C 1.37876 * 120.00428 * 179.97438 * 5 4 2 8 8 N 1.31519 * 119.99563 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00432 * 180.02562 * 7 5 4 10 10 H 1.48508 * 109.47282 * 89.99593 * 9 7 5 11 11 H 1.48498 * 109.47211 * 210.00040 * 9 7 5 12 12 H 1.48506 * 109.46856 * 330.00220 * 9 7 5 13 13 C 1.53000 * 109.47233 * 120.00458 * 2 1 3 14 14 N 1.46901 * 109.46769 * 299.99531 * 13 2 1 15 15 C 1.46906 * 110.99793 * 180.02562 * 14 13 2 16 16 H 1.09003 * 109.47279 * 325.00167 * 15 14 13 17 17 C 1.50694 * 109.47106 * 85.00220 * 15 14 13 18 18 O 1.20829 * 120.00042 * 0.02562 * 17 15 14 19 19 O 1.34232 * 120.00362 * 180.02562 * 17 15 14 20 20 C 1.50701 * 109.46893 * 205.00308 * 15 14 13 21 21 C 1.38676 * 120.41635 * 140.00486 * 20 15 14 22 22 C 1.38631 * 118.41768 * 179.97438 * 21 20 15 23 23 C 1.38231 * 119.16307 * 359.97438 * 22 21 20 24 24 N 1.31860 * 120.75989 * 0.02562 * 23 22 21 25 25 C 1.31883 * 121.72767 * 359.70515 * 24 23 22 26 26 H 1.09000 * 109.46986 * 299.99746 * 1 2 3 27 27 H 1.08993 * 109.47662 * 59.99968 * 1 2 3 28 28 H 1.09002 * 109.47075 * 180.02562 * 1 2 3 29 29 H 1.08992 * 109.47554 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.47108 * 300.00289 * 3 2 1 31 31 H 1.09000 * 109.46870 * 60.00183 * 3 2 1 32 32 H 1.09001 * 109.47109 * 179.97438 * 4 2 1 33 33 H 1.09002 * 109.47508 * 299.99876 * 4 2 1 34 34 H 0.97000 * 119.99425 * 180.02562 * 8 7 5 35 35 H 1.09002 * 109.47398 * 59.99826 * 13 2 1 36 36 H 1.09001 * 109.47194 * 180.02562 * 13 2 1 37 37 H 1.00899 * 111.00283 * 303.95539 * 14 13 2 38 38 H 0.96700 * 117.00257 * 179.97438 * 19 17 15 39 39 H 1.07997 * 120.78895 * 359.97438 * 21 20 15 40 40 H 1.07994 * 120.41508 * 180.02562 * 22 21 20 41 41 H 1.07999 * 119.61774 * 179.97438 * 23 22 21 42 42 H 1.08000 * 119.61311 * 180.31785 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.5376 -0.0109 -2.4797 6 1 0.9164 0.8671 -2.3806 7 6 1.8710 -0.4816 -3.7320 8 7 2.6278 -1.5504 -3.8527 9 14 1.2489 0.3994 -5.2572 10 1 2.2273 1.4412 -5.6608 11 1 1.0841 -0.5794 -6.3617 12 1 -0.0593 1.0370 -4.9615 13 6 2.0401 -0.7213 1.2492 14 7 1.5504 -0.0288 2.4486 15 6 2.0220 -0.6947 3.6703 16 1 2.0617 -1.7714 3.5050 17 6 3.3980 -0.1889 4.0188 18 8 3.9311 0.6415 3.3215 19 8 4.0317 -0.6607 5.1041 20 6 1.0746 -0.3950 4.8033 21 6 0.7362 -1.3831 5.7155 22 6 -0.1385 -1.0618 6.7419 23 6 -0.6402 0.2237 6.8218 24 7 -0.2962 1.1381 5.9362 25 6 0.5372 0.8696 4.9500 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6768 1.9562 0.8900 32 1 3.1299 -0.7209 -1.2496 33 1 1.6766 -1.7490 -1.2493 34 1 2.8627 -1.8813 -4.7337 35 1 1.6767 -1.7490 1.2492 36 1 3.1301 -0.7209 1.2494 37 1 1.8199 0.9435 2.4401 38 1 4.9127 -0.3065 5.2867 39 1 1.1443 -2.3792 5.6283 40 1 -0.4237 -1.8064 7.4704 41 1 -1.3225 0.4819 7.6182 42 1 0.7997 1.6460 4.2467 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609673960.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:04 Heat of formation + Delta-G solvation = -88.379438 kcal Electronic energy + Delta-G solvation = -23591.279798 eV Core-core repulsion = 20148.865506 eV Total energy + Delta-G solvation = -3442.414292 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.91916 -40.71750 -39.14624 -37.28528 -36.25383 -34.49152 -33.27730 -32.10082 -29.22203 -28.24764 -27.91140 -26.48044 -24.70188 -24.20734 -23.88909 -21.83486 -19.73152 -19.25223 -18.35818 -18.22649 -18.06356 -17.33703 -17.02204 -16.56220 -16.16914 -15.63231 -15.29751 -15.26149 -14.86824 -14.56177 -14.33861 -14.15414 -13.91627 -13.89696 -13.70056 -13.26958 -12.86078 -12.74003 -12.68669 -12.62361 -12.53218 -12.25463 -12.15727 -12.00847 -11.90968 -11.42642 -10.90864 -10.81597 -10.68654 -10.50027 -10.39202 -9.93914 -9.72104 -8.13818 -6.20352 0.12290 0.38863 1.03909 1.41321 1.41474 1.52333 1.99380 2.43945 2.78743 3.10408 3.20382 3.43340 3.74546 3.83781 4.05959 4.09420 4.14902 4.16325 4.29347 4.33467 4.42949 4.63534 4.73264 4.74179 4.86953 4.91323 5.06737 5.16800 5.20664 5.22916 5.29705 5.46535 5.51261 5.52967 5.57826 5.60812 5.72879 5.82457 5.85462 5.92912 6.14410 6.36089 6.84598 6.94312 7.06041 7.46792 8.98577 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.024432 B = 0.003530 C = 0.003320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.758627 B = 7930.939102 C = 8432.389880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.053 4.053 3 C -0.121 4.121 4 C 0.042 3.958 5 C -0.514 4.514 6 H 0.065 0.935 7 C -0.003 4.003 8 N -0.937 5.937 9 Si 0.955 3.045 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.263 1.263 13 C 0.077 3.923 14 N -0.646 5.646 15 C 0.142 3.858 16 H 0.142 0.858 17 C 0.458 3.542 18 O -0.542 6.542 19 O -0.504 6.504 20 C -0.127 4.127 21 C -0.056 4.056 22 C -0.164 4.164 23 C 0.088 3.912 24 N -0.514 5.514 25 C 0.106 3.894 26 H 0.065 0.935 27 H 0.039 0.961 28 H 0.038 0.962 29 H 0.030 0.970 30 H 0.049 0.951 31 H 0.061 0.939 32 H -0.019 1.019 33 H -0.009 1.009 34 H 0.260 0.740 35 H 0.077 0.923 36 H 0.018 0.982 37 H 0.351 0.649 38 H 0.424 0.576 39 H 0.162 0.838 40 H 0.171 0.829 41 H 0.180 0.820 42 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.119 -0.468 24.464 24.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.053 4.053 3 C -0.178 4.178 4 C 0.004 3.996 5 C -0.553 4.553 6 H 0.083 0.917 7 C -0.200 4.200 8 N -0.579 5.579 9 Si 0.781 3.219 10 H -0.203 1.203 11 H -0.211 1.211 12 H -0.187 1.187 13 C -0.051 4.051 14 N -0.279 5.279 15 C 0.029 3.971 16 H 0.160 0.840 17 C 0.299 3.701 18 O -0.432 6.432 19 O -0.316 6.316 20 C -0.130 4.130 21 C -0.082 4.082 22 C -0.184 4.184 23 C -0.068 4.068 24 N -0.223 5.223 25 C -0.051 4.051 26 H 0.084 0.916 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.049 0.951 30 H 0.068 0.932 31 H 0.080 0.920 32 H 0.000 1.000 33 H 0.009 0.991 34 H 0.068 0.932 35 H 0.095 0.905 36 H 0.037 0.963 37 H 0.173 0.827 38 H 0.286 0.714 39 H 0.180 0.820 40 H 0.189 0.811 41 H 0.197 0.803 42 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -4.235 0.039 24.145 24.513 hybrid contribution 2.109 -0.043 -1.408 2.537 sum -2.126 -0.003 22.736 22.835 Atomic orbital electron populations 1.21512 0.93824 1.00560 1.00560 1.20471 0.96525 0.95243 0.93112 1.21664 0.99189 0.96049 1.00907 1.18984 0.93826 0.94347 0.92435 1.21617 1.30222 1.11935 0.91476 0.91665 1.25896 0.95720 0.95891 1.02496 1.70105 1.38816 1.24927 1.24013 0.85591 0.79089 0.78229 0.79028 1.20302 1.21144 1.18675 1.22001 0.96225 0.98067 0.88840 1.60992 1.59923 1.07514 0.99484 1.20272 0.84341 1.02446 0.90043 0.84016 1.24927 0.89380 0.78364 0.77427 1.90770 1.67900 1.33041 1.51496 1.84513 1.37006 1.66028 1.44066 1.20233 1.00192 0.95982 0.96591 1.21807 0.94545 0.99795 0.92086 1.22482 0.97768 0.98492 0.99628 1.23367 0.97239 0.89764 0.96480 1.67729 1.13103 1.37450 1.04040 1.22524 0.92516 0.95520 0.94541 0.91561 0.94235 0.94318 0.95082 0.93229 0.92047 1.00048 0.99059 0.93168 0.90488 0.96324 0.82657 0.71413 0.82019 0.81143 0.80300 0.83910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.02 8.06 71.98 0.58 -3.44 16 2 C -0.05 -2.13 0.60 -52.18 -0.03 -2.16 16 3 C -0.12 -4.66 7.89 71.98 0.57 -4.09 16 4 C 0.04 2.16 4.04 29.85 0.12 2.29 16 5 C -0.51 -28.68 7.65 25.60 0.20 -28.48 16 6 H 0.07 3.50 5.68 -2.91 -0.02 3.48 16 7 C 0.00 -0.19 5.46 84.65 0.46 0.27 16 8 N -0.94 -57.48 13.29 21.45 0.28 -57.19 16 9 Si 0.96 44.85 29.54 68.60 2.03 46.87 16 10 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 11 H -0.29 -13.22 7.11 99.48 0.71 -12.52 16 12 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 13 C 0.08 2.60 4.34 86.30 0.37 2.97 16 14 N -0.65 -17.49 4.79 -499.34 -2.39 -19.88 16 15 C 0.14 3.08 2.72 43.42 0.12 3.20 16 16 H 0.14 2.59 7.69 -2.39 -0.02 2.58 16 17 C 0.46 10.63 7.44 71.23 0.53 11.16 16 18 O -0.54 -16.60 16.06 21.96 0.35 -16.25 16 19 O -0.50 -8.30 13.34 -51.44 -0.69 -8.98 16 20 C -0.13 -2.52 4.89 -19.77 -0.10 -2.61 16 21 C -0.06 -0.82 9.82 22.47 0.22 -0.60 16 22 C -0.16 -2.01 10.11 22.36 0.23 -1.79 16 23 C 0.09 1.41 11.18 84.69 0.95 2.36 16 24 N -0.51 -11.77 10.36 -195.84 -2.03 -13.80 16 25 C 0.11 2.44 10.49 84.67 0.89 3.32 16 26 H 0.07 2.16 7.60 -2.39 -0.02 2.14 16 27 H 0.04 1.60 6.62 -2.39 -0.02 1.58 16 28 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.05 2.04 6.62 -2.38 -0.02 2.02 16 31 H 0.06 1.99 6.57 -2.39 -0.02 1.98 16 32 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16 33 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 34 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 35 H 0.08 2.49 8.06 -2.39 -0.02 2.47 16 36 H 0.02 0.68 7.62 -2.39 -0.02 0.66 16 37 H 0.35 10.01 5.16 -89.69 -0.46 9.54 16 38 H 0.42 3.82 9.10 -74.06 -0.67 3.15 16 39 H 0.16 1.49 8.06 -2.91 -0.02 1.47 16 40 H 0.17 0.87 8.06 -2.91 -0.02 0.85 16 41 H 0.18 1.76 8.06 -2.91 -0.02 1.74 16 42 H 0.14 3.41 7.28 -2.91 -0.02 3.38 16 Total: -1.00 -72.63 346.44 2.57 -70.06 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: -0.09 Total: 16.78 kcal Atomic # 6 Polarization: -22.71 SS G_CDS: 5.10 Total: -17.60 kcal Atomic # 7 Polarization: -86.74 SS G_CDS: -4.13 Total: -90.88 kcal Atomic # 8 Polarization: -24.90 SS G_CDS: -0.33 Total: -25.23 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.87 kcal Total: -72.63 2.57 -70.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609673960.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.320 kcal (2) G-P(sol) polarization free energy of solvation -72.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds