Wall clock time and date at job start Tue Mar 31 2020 07:27:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46503 * 119.99972 * 2 1 4 4 C 1.52994 * 109.47001 * 269.99317 * 3 2 1 5 5 C 1.53008 * 109.47083 * 60.00114 * 4 3 2 6 6 C 1.52999 * 109.47370 * 179.97438 * 4 3 2 7 7 O 1.42896 * 109.47409 * 300.00085 * 4 3 2 8 8 C 1.34781 * 120.00098 * 179.97438 * 2 1 3 9 9 O 1.21591 * 119.99832 * 180.02562 * 8 2 1 10 10 N 1.34781 * 119.99949 * 0.02562 * 8 2 1 11 11 C 1.39951 * 119.99761 * 185.14561 * 10 8 2 12 12 C 1.39295 * 119.94667 * 214.22487 * 11 10 8 13 13 C 1.38480 * 120.43072 * 179.97438 * 12 11 10 14 14 C 1.37688 * 120.32153 * 0.30011 * 13 12 11 15 15 C 1.40740 * 119.88191 * 359.47108 * 14 13 12 16 16 C 1.41409 * 120.20948 * 180.26824 * 15 14 13 17 17 H 1.07996 * 119.99934 * 205.29954 * 16 15 14 18 18 C 1.39927 * 119.99864 * 25.30343 * 16 15 14 19 19 N 1.30829 * 120.00282 * 16.68640 * 18 16 15 20 20 Si 1.86800 * 119.99959 * 196.68953 * 18 16 15 21 21 H 1.48491 * 109.47581 * 59.99808 * 20 18 16 22 22 H 1.48497 * 109.47166 * 180.02562 * 20 18 16 23 23 H 1.48509 * 109.46904 * 299.99617 * 20 18 16 24 24 C 1.38234 * 119.95272 * 34.24759 * 11 10 8 25 25 H 1.08990 * 109.47462 * 269.99875 * 1 2 3 26 26 H 1.08992 * 109.46833 * 30.00651 * 1 2 3 27 27 H 1.09008 * 109.46416 * 149.99950 * 1 2 3 28 28 H 1.08992 * 109.47056 * 29.99870 * 3 2 1 29 29 H 1.09005 * 109.46860 * 149.99814 * 3 2 1 30 30 H 1.09004 * 109.47079 * 59.99852 * 5 4 3 31 31 H 1.09000 * 109.47035 * 180.02562 * 5 4 3 32 32 H 1.09000 * 109.46982 * 299.99916 * 5 4 3 33 33 H 1.08996 * 109.47120 * 60.00109 * 6 4 3 34 34 H 1.09003 * 109.47511 * 180.02562 * 6 4 3 35 35 H 1.09004 * 109.47052 * 300.00308 * 6 4 3 36 36 H 0.96692 * 114.00546 * 299.99979 * 7 4 3 37 37 H 0.96999 * 119.99772 * 5.15132 * 10 8 2 38 38 H 1.08004 * 119.77886 * 0.02562 * 12 11 10 39 39 H 1.08006 * 119.84066 * 180.02562 * 13 12 11 40 40 H 1.08001 * 120.05555 * 179.72592 * 14 13 12 41 41 H 0.96996 * 120.00360 * 179.97438 * 19 18 16 42 42 H 1.08003 * 120.15393 * 359.97438 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4526 1.7103 -1.4425 5 6 1.1158 1.8932 -2.1639 6 6 3.2171 3.0356 -1.4425 7 8 3.2250 0.7144 -2.1160 8 6 2.1389 -1.1672 0.0005 9 8 3.3548 -1.1672 0.0010 10 7 1.4650 -2.3345 0.0005 11 6 2.1606 -3.5440 0.1098 12 6 1.6967 -4.6756 -0.5570 13 6 2.3773 -5.8773 -0.4563 14 6 3.5178 -5.9682 0.3097 15 6 4.0011 -4.8320 0.9852 16 6 5.1749 -4.9162 1.7693 17 1 5.3302 -4.2253 2.5847 18 6 6.1351 -5.8945 1.4886 19 7 6.1239 -6.5100 0.3342 20 14 7.4330 -6.3219 2.7623 21 1 6.7714 -6.8127 3.9978 22 1 8.3251 -7.3801 2.2242 23 1 8.2348 -5.1122 3.0772 24 6 3.3066 -3.6140 0.8795 25 1 -0.3634 0.0000 1.0275 26 1 -0.3633 0.8899 -0.5139 27 1 -0.3632 -0.8901 -0.5139 28 1 1.6085 2.0283 0.5138 29 1 3.1500 1.1384 0.5139 30 1 0.5266 2.6529 -1.6501 31 1 1.2975 2.2074 -3.1917 32 1 0.5708 0.9492 -2.1638 33 1 4.1694 2.9058 -0.9285 34 1 3.3985 3.3505 -2.4702 35 1 2.6276 3.7951 -0.9289 36 1 4.0874 0.5459 -1.7125 37 1 0.4980 -2.3362 -0.0753 38 1 0.8007 -4.6150 -1.1571 39 1 2.0094 -6.7487 -0.9777 40 1 4.0428 -6.9087 0.3888 41 1 6.7898 -7.1879 0.1395 42 1 3.6671 -2.7372 1.3969 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001670084375.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:18 Heat of formation + Delta-G solvation = -51.201725 kcal Electronic energy + Delta-G solvation = -23836.322448 eV Core-core repulsion = 20395.520303 eV Total energy + Delta-G solvation = -3440.802145 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.24044 -38.28506 -37.00816 -34.99258 -34.33890 -32.93381 -32.07354 -29.73305 -28.32325 -27.96720 -27.10081 -25.40214 -25.07886 -21.46934 -20.84292 -20.33286 -19.22502 -18.06463 -17.28548 -16.72585 -16.03371 -15.48554 -15.15887 -14.90748 -14.56565 -14.24819 -14.14766 -13.67479 -13.30794 -13.01697 -12.84654 -12.73346 -12.55073 -12.30125 -12.21736 -12.03841 -11.70842 -11.61619 -11.52401 -11.24905 -11.03733 -10.85396 -10.57894 -10.43892 -10.13333 -10.01115 -9.65603 -9.44779 -9.12988 -8.78650 -8.38054 -7.34890 -6.76695 -6.62877 -4.25133 2.81729 2.90553 3.06235 3.13114 3.16579 3.29036 3.81602 4.02292 4.25566 4.38325 4.71097 4.74258 4.81504 4.90086 5.00160 5.20264 5.34801 5.39698 5.51736 5.59352 5.68721 5.75605 5.81628 5.86351 5.97009 6.13208 6.31669 6.49111 6.52769 6.90320 6.91550 7.13126 7.18077 7.32773 7.40656 7.76441 7.89145 7.91626 8.09016 8.18108 8.34666 8.50722 8.74676 8.99364 9.06304 9.16843 10.30876 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.020521 B = 0.004045 C = 0.003651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.135934 B = 6921.305398 C = 7668.057579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.630 5.630 3 C 0.110 3.890 4 C 0.107 3.893 5 C -0.139 4.139 6 C -0.176 4.176 7 O -0.550 6.550 8 C 0.707 3.293 9 O -0.561 6.561 10 N -0.682 5.682 11 C 0.171 3.829 12 C -0.264 4.264 13 C -0.091 4.091 14 C -0.175 4.175 15 C 0.121 3.879 16 C -0.459 4.459 17 H 0.076 0.924 18 C 0.076 3.924 19 N -0.795 5.795 20 Si 0.908 3.092 21 H -0.264 1.264 22 H -0.279 1.279 23 H -0.266 1.266 24 C -0.209 4.209 25 H 0.053 0.947 26 H 0.074 0.926 27 H 0.065 0.935 28 H 0.079 0.921 29 H 0.087 0.913 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.066 0.934 33 H 0.060 0.940 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.383 0.617 37 H 0.392 0.608 38 H 0.086 0.914 39 H 0.090 0.910 40 H 0.118 0.882 41 H 0.279 0.721 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.993 14.392 -1.181 17.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.368 5.368 3 C -0.015 4.015 4 C 0.065 3.935 5 C -0.196 4.196 6 C -0.235 4.235 7 O -0.357 6.357 8 C 0.409 3.591 9 O -0.436 6.436 10 N -0.330 5.330 11 C 0.079 3.921 12 C -0.286 4.286 13 C -0.110 4.110 14 C -0.195 4.195 15 C 0.118 3.882 16 C -0.489 4.489 17 H 0.094 0.906 18 C -0.141 4.141 19 N -0.421 5.421 20 Si 0.732 3.268 21 H -0.189 1.189 22 H -0.204 1.204 23 H -0.191 1.191 24 C -0.231 4.231 25 H 0.071 0.929 26 H 0.092 0.908 27 H 0.083 0.917 28 H 0.097 0.903 29 H 0.105 0.895 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.232 0.768 37 H 0.227 0.773 38 H 0.105 0.895 39 H 0.108 0.892 40 H 0.136 0.864 41 H 0.090 0.910 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -9.484 14.235 -1.685 17.187 hybrid contribution 0.495 -0.097 0.682 0.848 sum -8.989 14.138 -1.004 16.784 Atomic orbital electron populations 1.21813 0.80617 1.02871 1.01453 1.46827 1.05722 1.04797 1.79490 1.21994 0.98368 0.84445 0.96664 1.21621 0.92222 0.87676 0.91990 1.21820 0.95219 1.02020 1.00578 1.22451 1.00838 0.97389 1.02785 1.86517 1.33841 1.59180 1.56144 1.15786 0.85470 0.80045 0.77788 1.90923 1.11181 1.85450 1.56011 1.42727 1.09310 1.04186 1.76747 1.17234 0.94476 0.82700 0.97693 1.19998 1.04595 0.93998 1.09976 1.20433 0.96044 0.95372 0.99172 1.21318 0.96321 0.99228 1.02636 1.17474 0.91265 0.89668 0.89825 1.19501 1.01988 1.13365 1.14011 0.90625 1.25876 0.98489 0.94586 0.95132 1.69831 1.32246 1.20036 1.19938 0.86381 0.80031 0.78854 0.81487 1.18903 1.20407 1.19072 1.20928 0.98912 0.97654 1.05617 0.92888 0.90759 0.91665 0.90289 0.89451 0.91659 0.92188 0.91539 0.92046 0.91700 0.91808 0.76756 0.77293 0.89529 0.89156 0.86428 0.90973 0.87603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.73 9.15 59.85 0.55 1.28 16 2 N -0.63 -8.69 2.55 -187.35 -0.48 -9.17 16 3 C 0.11 1.29 4.70 -4.04 -0.02 1.27 16 4 C 0.11 1.23 1.17 -90.62 -0.11 1.12 16 5 C -0.14 -1.38 7.59 37.16 0.28 -1.09 16 6 C -0.18 -1.59 8.81 37.16 0.33 -1.26 16 7 O -0.55 -8.56 11.79 -43.91 -0.52 -9.08 16 8 C 0.71 13.51 7.52 -86.91 -0.65 12.85 16 9 O -0.56 -12.97 12.45 -3.39 -0.04 -13.01 16 10 N -0.68 -13.03 5.22 -14.27 -0.07 -13.10 16 11 C 0.17 4.05 6.26 -83.76 -0.52 3.53 16 12 C -0.26 -6.07 9.97 -39.10 -0.39 -6.45 16 13 C -0.09 -2.20 10.02 -39.69 -0.40 -2.60 16 14 C -0.18 -4.73 8.69 -38.84 -0.34 -5.06 16 15 C 0.12 3.40 5.57 -106.85 -0.59 2.81 16 16 C -0.46 -12.87 9.05 -37.74 -0.34 -13.21 16 17 H 0.08 2.06 7.90 -52.49 -0.41 1.65 16 18 C 0.08 2.01 5.16 -17.35 -0.09 1.92 16 19 N -0.79 -21.44 10.94 55.55 0.61 -20.84 16 20 Si 0.91 19.46 29.59 -169.99 -5.03 14.43 16 21 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 22 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 23 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 24 C -0.21 -5.60 8.39 -38.69 -0.32 -5.92 16 25 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.07 0.54 6.05 -51.93 -0.31 0.23 16 27 H 0.06 0.61 6.29 -51.92 -0.33 0.28 16 28 H 0.08 0.69 8.07 -51.93 -0.42 0.27 16 29 H 0.09 1.19 7.42 -51.93 -0.39 0.80 16 30 H 0.06 0.47 8.08 -51.93 -0.42 0.05 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.73 5.99 -51.93 -0.31 0.42 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.38 5.88 8.45 45.56 0.38 6.27 16 37 H 0.39 5.97 6.51 -40.82 -0.27 5.71 16 38 H 0.09 1.74 8.06 -52.48 -0.42 1.31 16 39 H 0.09 1.93 8.06 -52.48 -0.42 1.50 16 40 H 0.12 3.24 6.17 -52.49 -0.32 2.92 16 41 H 0.28 6.86 8.30 -40.82 -0.34 6.52 16 42 H 0.11 2.92 6.46 -52.48 -0.34 2.58 16 LS Contribution 338.41 15.07 5.10 5.10 Total: -1.00 -32.98 338.41 -8.28 -41.26 By element: Atomic # 1 Polarization: 20.45 SS G_CDS: -5.23 Total: 15.22 kcal Atomic # 6 Polarization: -8.19 SS G_CDS: -2.62 Total: -10.81 kcal Atomic # 7 Polarization: -43.16 SS G_CDS: 0.06 Total: -43.11 kcal Atomic # 8 Polarization: -21.53 SS G_CDS: -0.56 Total: -22.09 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -5.03 Total: 14.43 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.98 -8.28 -41.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670084375.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.940 kcal (2) G-P(sol) polarization free energy of solvation -32.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds