Wall clock time and date at job start Tue Mar 31 2020 07:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46503 * 119.99972 * 2 1 4 4 C 1.52994 * 109.47001 * 269.99317 * 3 2 1 5 5 C 1.53008 * 109.47083 * 60.00114 * 4 3 2 6 6 C 1.52999 * 109.47370 * 179.97438 * 4 3 2 7 7 O 1.42896 * 109.47409 * 300.00085 * 4 3 2 8 8 C 1.34781 * 120.00098 * 179.97438 * 2 1 3 9 9 O 1.21591 * 119.99832 * 180.02562 * 8 2 1 10 10 N 1.34781 * 119.99949 * 0.02562 * 8 2 1 11 11 C 1.39951 * 119.99761 * 185.14561 * 10 8 2 12 12 C 1.39295 * 119.94667 * 214.22487 * 11 10 8 13 13 C 1.38480 * 120.43072 * 179.97438 * 12 11 10 14 14 C 1.37688 * 120.32153 * 0.30011 * 13 12 11 15 15 C 1.40740 * 119.88191 * 359.47108 * 14 13 12 16 16 C 1.41409 * 120.20948 * 180.26824 * 15 14 13 17 17 H 1.07996 * 119.99934 * 205.29954 * 16 15 14 18 18 C 1.39927 * 119.99864 * 25.30343 * 16 15 14 19 19 N 1.30829 * 120.00282 * 16.68640 * 18 16 15 20 20 Si 1.86800 * 119.99959 * 196.68953 * 18 16 15 21 21 H 1.48491 * 109.47581 * 59.99808 * 20 18 16 22 22 H 1.48497 * 109.47166 * 180.02562 * 20 18 16 23 23 H 1.48509 * 109.46904 * 299.99617 * 20 18 16 24 24 C 1.38234 * 119.95272 * 34.24759 * 11 10 8 25 25 H 1.08990 * 109.47462 * 269.99875 * 1 2 3 26 26 H 1.08992 * 109.46833 * 30.00651 * 1 2 3 27 27 H 1.09008 * 109.46416 * 149.99950 * 1 2 3 28 28 H 1.08992 * 109.47056 * 29.99870 * 3 2 1 29 29 H 1.09005 * 109.46860 * 149.99814 * 3 2 1 30 30 H 1.09004 * 109.47079 * 59.99852 * 5 4 3 31 31 H 1.09000 * 109.47035 * 180.02562 * 5 4 3 32 32 H 1.09000 * 109.46982 * 299.99916 * 5 4 3 33 33 H 1.08996 * 109.47120 * 60.00109 * 6 4 3 34 34 H 1.09003 * 109.47511 * 180.02562 * 6 4 3 35 35 H 1.09004 * 109.47052 * 300.00308 * 6 4 3 36 36 H 0.96692 * 114.00546 * 299.99979 * 7 4 3 37 37 H 0.96999 * 119.99772 * 5.15132 * 10 8 2 38 38 H 1.08004 * 119.77886 * 0.02562 * 12 11 10 39 39 H 1.08006 * 119.84066 * 180.02562 * 13 12 11 40 40 H 1.08001 * 120.05555 * 179.72592 * 14 13 12 41 41 H 0.96996 * 120.00360 * 179.97438 * 19 18 16 42 42 H 1.08003 * 120.15393 * 359.97438 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4526 1.7103 -1.4425 5 6 1.1158 1.8932 -2.1639 6 6 3.2171 3.0356 -1.4425 7 8 3.2250 0.7144 -2.1160 8 6 2.1389 -1.1672 0.0005 9 8 3.3548 -1.1672 0.0010 10 7 1.4650 -2.3345 0.0005 11 6 2.1606 -3.5440 0.1098 12 6 1.6967 -4.6756 -0.5570 13 6 2.3773 -5.8773 -0.4563 14 6 3.5178 -5.9682 0.3097 15 6 4.0011 -4.8320 0.9852 16 6 5.1749 -4.9162 1.7693 17 1 5.3302 -4.2253 2.5847 18 6 6.1351 -5.8945 1.4886 19 7 6.1239 -6.5100 0.3342 20 14 7.4330 -6.3219 2.7623 21 1 6.7714 -6.8127 3.9978 22 1 8.3251 -7.3801 2.2242 23 1 8.2348 -5.1122 3.0772 24 6 3.3066 -3.6140 0.8795 25 1 -0.3634 0.0000 1.0275 26 1 -0.3633 0.8899 -0.5139 27 1 -0.3632 -0.8901 -0.5139 28 1 1.6085 2.0283 0.5138 29 1 3.1500 1.1384 0.5139 30 1 0.5266 2.6529 -1.6501 31 1 1.2975 2.2074 -3.1917 32 1 0.5708 0.9492 -2.1638 33 1 4.1694 2.9058 -0.9285 34 1 3.3985 3.3505 -2.4702 35 1 2.6276 3.7951 -0.9289 36 1 4.0874 0.5459 -1.7125 37 1 0.4980 -2.3362 -0.0753 38 1 0.8007 -4.6150 -1.1571 39 1 2.0094 -6.7487 -0.9777 40 1 4.0428 -6.9087 0.3888 41 1 6.7898 -7.1879 0.1395 42 1 3.6671 -2.7372 1.3969 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001670084375.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:17 Heat of formation + Delta-G solvation = -73.743375 kcal Electronic energy + Delta-G solvation = -23837.299927 eV Core-core repulsion = 20395.520303 eV Total energy + Delta-G solvation = -3441.779624 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.63027 -39.65698 -38.61067 -36.24840 -36.13958 -34.73203 -33.10636 -31.72986 -29.95714 -28.91577 -27.93039 -27.25312 -26.41653 -23.14430 -22.71702 -21.47235 -20.70187 -19.68502 -18.86560 -17.89598 -17.32619 -17.22819 -16.62949 -16.40300 -16.04620 -15.65085 -15.48966 -15.02530 -14.71090 -14.62307 -14.10005 -13.98112 -13.70323 -13.51825 -13.33677 -13.16405 -13.05496 -12.96911 -12.77995 -12.58077 -12.53650 -12.44362 -12.21114 -11.90854 -11.72313 -11.55421 -11.23576 -11.16721 -10.93695 -10.63806 -9.51780 -9.36179 -8.65166 -8.56997 -6.34621 0.96452 1.06651 1.36559 1.48651 1.53158 1.68752 2.21682 2.28129 2.77010 3.02920 3.39490 3.77408 3.84891 3.95969 4.08547 4.23353 4.40109 4.48732 4.58902 4.65333 4.71593 4.77165 4.82398 4.89716 4.94734 5.02067 5.08582 5.13312 5.15217 5.18707 5.24956 5.35337 5.36856 5.58839 5.76568 5.85324 6.05632 6.12884 6.16421 6.40084 6.71205 6.79017 6.96613 7.01471 7.06184 7.67469 8.36360 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.020521 B = 0.004045 C = 0.003651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.135934 B = 6921.305398 C = 7668.057579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.619 5.619 3 C 0.106 3.894 4 C 0.098 3.902 5 C -0.137 4.137 6 C -0.170 4.170 7 O -0.578 6.578 8 C 0.697 3.303 9 O -0.610 6.610 10 N -0.674 5.674 11 C 0.179 3.821 12 C -0.256 4.256 13 C -0.090 4.090 14 C -0.201 4.201 15 C 0.091 3.909 16 C -0.503 4.503 17 H 0.065 0.935 18 C 0.036 3.964 19 N -0.826 5.826 20 Si 0.984 3.016 21 H -0.257 1.257 22 H -0.262 1.262 23 H -0.265 1.265 24 C -0.234 4.234 25 H 0.070 0.930 26 H 0.105 0.895 27 H 0.069 0.931 28 H 0.122 0.878 29 H 0.061 0.939 30 H 0.101 0.899 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.062 0.938 35 H 0.092 0.908 36 H 0.377 0.623 37 H 0.413 0.587 38 H 0.127 0.873 39 H 0.122 0.878 40 H 0.104 0.896 41 H 0.288 0.712 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.177 15.686 -1.349 19.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.356 5.356 3 C -0.018 4.018 4 C 0.057 3.943 5 C -0.194 4.194 6 C -0.228 4.228 7 O -0.385 6.385 8 C 0.399 3.601 9 O -0.489 6.489 10 N -0.324 5.324 11 C 0.085 3.915 12 C -0.277 4.277 13 C -0.108 4.108 14 C -0.221 4.221 15 C 0.088 3.912 16 C -0.532 4.532 17 H 0.083 0.917 18 C -0.179 4.179 19 N -0.452 5.452 20 Si 0.804 3.196 21 H -0.181 1.181 22 H -0.186 1.186 23 H -0.189 1.189 24 C -0.257 4.257 25 H 0.089 0.911 26 H 0.124 0.876 27 H 0.087 0.913 28 H 0.140 0.860 29 H 0.079 0.921 30 H 0.120 0.880 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.081 0.919 35 H 0.111 0.889 36 H 0.225 0.775 37 H 0.252 0.748 38 H 0.145 0.855 39 H 0.140 0.860 40 H 0.122 0.878 41 H 0.099 0.901 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -11.760 15.586 -1.869 19.614 hybrid contribution 1.011 -0.359 0.652 1.255 sum -10.749 15.227 -1.217 18.679 Atomic orbital electron populations 1.22164 0.77528 1.04691 1.03187 1.46874 1.07595 1.03531 1.77577 1.22215 0.97966 0.84340 0.97268 1.21952 0.92970 0.87810 0.91583 1.21870 0.94271 1.02574 1.00659 1.22381 1.00716 0.96639 1.03022 1.86491 1.33882 1.60916 1.57224 1.16097 0.85114 0.81242 0.77620 1.90898 1.13646 1.86341 1.57998 1.42522 1.10181 1.03006 1.76674 1.17305 0.93523 0.84726 0.95983 1.20407 1.05320 0.92968 1.09036 1.20804 0.94870 0.97118 0.98040 1.21287 0.97913 0.98380 1.04521 1.17823 0.91995 0.90690 0.90693 1.19725 1.03481 1.15152 1.14869 0.91657 1.26743 1.00357 0.93667 0.97092 1.69878 1.33409 1.20464 1.21442 0.85244 0.76996 0.78802 0.78544 1.18127 1.18647 1.18916 1.20868 1.00864 0.96555 1.07366 0.91118 0.87644 0.91257 0.86030 0.92079 0.88035 0.92652 0.92589 0.92737 0.91871 0.88940 0.77492 0.74836 0.85508 0.85979 0.87809 0.90106 0.89817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.03 9.15 127.77 1.17 2.20 16 2 N -0.62 -16.06 2.55 -864.92 -2.21 -18.26 16 3 C 0.11 2.32 4.70 86.38 0.41 2.72 16 4 C 0.10 2.11 1.17 -10.79 -0.01 2.09 16 5 C -0.14 -2.28 7.59 71.98 0.55 -1.73 16 6 C -0.17 -2.74 8.81 71.98 0.63 -2.11 16 7 O -0.58 -18.38 11.79 -140.68 -1.66 -20.04 16 8 C 0.70 26.72 7.52 179.05 1.35 28.06 16 9 O -0.61 -29.58 12.45 4.29 0.05 -29.52 16 10 N -0.67 -25.20 5.22 -317.31 -1.66 -26.86 16 11 C 0.18 8.48 6.26 38.10 0.24 8.72 16 12 C -0.26 -11.34 9.97 22.58 0.23 -11.11 16 13 C -0.09 -4.26 10.02 22.20 0.22 -4.04 16 14 C -0.20 -11.18 8.69 22.75 0.20 -10.98 16 15 C 0.09 5.39 5.57 -21.31 -0.12 5.27 16 16 C -0.50 -29.84 9.05 23.46 0.21 -29.63 16 17 H 0.07 3.83 7.90 -2.91 -0.02 3.80 16 18 C 0.04 1.94 5.16 85.25 0.44 2.38 16 19 N -0.83 -45.97 10.94 21.82 0.24 -45.74 16 20 Si 0.98 40.91 29.59 68.60 2.03 42.94 16 21 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 22 H -0.26 -10.10 7.11 99.48 0.71 -9.40 16 23 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 24 C -0.23 -13.15 8.39 22.85 0.19 -12.95 16 25 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.11 1.03 6.05 -2.39 -0.01 1.01 16 27 H 0.07 1.04 6.29 -2.38 -0.01 1.03 16 28 H 0.12 1.63 8.07 -2.39 -0.02 1.61 16 29 H 0.06 1.69 7.42 -2.38 -0.02 1.67 16 30 H 0.10 0.94 8.08 -2.39 -0.02 0.92 16 31 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.06 1.05 5.99 -2.39 -0.01 1.04 16 33 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.38 12.47 8.45 -74.06 -0.63 11.84 16 37 H 0.41 11.60 6.51 -92.71 -0.60 11.00 16 38 H 0.13 4.58 8.06 -2.91 -0.02 4.56 16 39 H 0.12 4.95 8.06 -2.91 -0.02 4.92 16 40 H 0.10 5.96 6.17 -2.91 -0.02 5.94 16 41 H 0.29 14.43 8.30 -92.71 -0.77 13.66 16 42 H 0.08 4.96 6.46 -2.91 -0.02 4.94 16 Total: -1.00 -77.31 338.41 2.32 -74.99 By element: Atomic # 1 Polarization: 43.78 SS G_CDS: -0.18 Total: 43.60 kcal Atomic # 6 Polarization: -26.81 SS G_CDS: 5.70 Total: -21.11 kcal Atomic # 7 Polarization: -87.23 SS G_CDS: -3.62 Total: -90.86 kcal Atomic # 8 Polarization: -47.96 SS G_CDS: -1.61 Total: -49.56 kcal Atomic # 14 Polarization: 40.91 SS G_CDS: 2.03 Total: 42.94 kcal Total: -77.31 2.32 -74.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670084375.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.248 kcal (2) G-P(sol) polarization free energy of solvation -77.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds