Wall clock time and date at job start Tue Mar 31 2020 07:26:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35970 * 117.00222 * 2 1 4 4 C 1.38719 * 119.98862 * 180.02562 * 3 2 1 5 5 C 1.38093 * 120.01722 * 180.27322 * 4 3 2 6 6 C 1.38835 * 119.98549 * 359.47532 * 5 4 3 7 7 N 1.40150 * 120.01678 * 180.22717 * 6 5 4 8 8 C 1.34777 * 119.99908 * 336.20997 * 7 6 5 9 9 O 1.21583 * 120.00032 * 9.15989 * 8 7 6 10 10 N 1.34773 * 119.99766 * 189.15728 * 8 7 6 11 11 C 1.46498 * 120.00326 * 7.33616 * 10 8 7 12 12 C 1.50700 * 109.47369 * 89.99798 * 11 10 8 13 13 H 1.08003 * 119.99541 * 0.02562 * 12 11 10 14 14 C 1.37871 * 120.00269 * 180.02562 * 12 11 10 15 15 N 1.31510 * 120.00102 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00131 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47217 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47470 * 120.00102 * 16 14 12 19 19 H 1.48502 * 109.47164 * 240.00278 * 16 14 12 20 20 C 1.46509 * 119.99850 * 187.33504 * 10 8 7 21 21 C 1.52999 * 109.47148 * 303.13898 * 20 10 8 22 22 C 1.53000 * 109.46802 * 63.14280 * 20 10 8 23 23 C 1.38840 * 119.96978 * 0.54832 * 6 5 4 24 24 C 1.38099 * 119.98523 * 359.70379 * 23 6 5 25 25 H 1.08998 * 109.46907 * 300.00238 * 1 2 3 26 26 H 1.08997 * 109.46857 * 59.99357 * 1 2 3 27 27 H 1.09000 * 109.47367 * 179.97438 * 1 2 3 28 28 H 1.07998 * 119.99189 * 0.02562 * 4 3 2 29 29 H 1.08002 * 120.01038 * 179.72720 * 5 4 3 30 30 H 0.97004 * 119.99967 * 156.21158 * 7 6 5 31 31 H 1.08998 * 109.47412 * 209.99933 * 11 10 8 32 32 H 1.08995 * 109.46984 * 330.00035 * 11 10 8 33 33 H 0.97005 * 120.00398 * 180.02562 * 15 14 12 34 34 H 1.09005 * 109.46857 * 183.14192 * 20 10 8 35 35 H 1.09000 * 109.46881 * 65.97076 * 21 20 10 36 36 H 1.08995 * 109.47289 * 185.97073 * 21 20 10 37 37 H 1.09000 * 109.46679 * 305.97012 * 21 20 10 38 38 H 1.08997 * 109.47490 * 62.91647 * 22 20 10 39 39 H 1.09005 * 109.46496 * 182.91364 * 22 20 10 40 40 H 1.08994 * 109.46952 * 302.90948 * 22 20 10 41 41 H 1.07996 * 120.00641 * 179.68055 * 23 6 5 42 42 H 1.07998 * 119.99028 * 180.02562 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2115 0.0000 4 6 3.4317 1.2837 -0.0005 5 6 4.0593 2.5138 0.0052 6 6 3.3035 3.6784 0.0004 7 7 3.9398 4.9271 0.0014 8 6 5.1953 5.0433 0.4773 9 8 5.8367 4.0470 0.7500 10 7 5.7399 6.2638 0.6509 11 6 4.9182 7.4641 0.4771 12 6 4.2869 7.8359 1.7940 13 1 4.4790 7.2380 2.6727 14 6 3.4642 8.9391 1.8771 15 7 3.2299 9.6667 0.8070 16 14 2.6822 9.4002 3.5097 17 1 3.1009 8.4280 4.5512 18 1 3.1200 10.7643 3.9005 19 1 1.2035 9.3745 3.3751 20 6 7.1538 6.3903 1.0135 21 6 7.4203 5.6151 2.3054 22 6 8.0214 5.8214 -0.1109 23 6 1.9170 3.6055 0.0015 24 6 1.2906 2.3747 0.0010 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 4.0195 0.3778 -0.0014 29 1 5.1378 2.5699 0.0092 30 1 3.4765 5.7078 -0.3405 31 1 5.5442 8.2859 0.1295 32 1 4.1373 7.2665 -0.2572 33 1 2.6513 10.4432 0.8655 34 1 7.3976 7.4420 1.1640 35 1 7.2783 4.5495 2.1255 36 1 8.4443 5.7951 2.6325 37 1 6.7279 5.9485 3.0785 38 1 7.8702 6.4064 -1.0181 39 1 9.0707 5.8681 0.1808 40 1 7.7417 4.7844 -0.2964 41 1 1.3285 4.5110 0.0030 42 1 0.2121 2.3179 0.0014 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042248766.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:53 Heat of formation + Delta-G solvation = -30.093630 kcal Electronic energy + Delta-G solvation = -23769.613766 eV Core-core repulsion = 20329.726937 eV Total energy + Delta-G solvation = -3439.886829 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 3.16 seconds Orbital eigenvalues (eV) -40.39543 -39.48012 -37.41783 -35.46023 -34.22868 -32.91875 -31.29683 -30.77904 -28.61396 -27.19985 -26.69388 -26.60785 -23.16420 -22.57989 -22.39713 -21.00408 -19.13796 -17.99220 -17.19474 -16.86647 -16.41063 -15.75072 -15.62348 -15.02067 -14.66146 -14.50135 -14.13566 -14.01753 -13.47906 -13.13616 -13.04555 -12.73145 -12.55188 -12.46410 -12.24737 -11.98244 -11.88968 -11.57864 -11.45912 -11.15901 -10.99946 -10.91491 -10.70733 -10.66622 -10.39087 -10.15686 -9.75298 -9.56124 -8.91006 -8.68059 -8.59885 -7.83394 -7.18652 -6.24134 -4.31646 1.62413 1.72275 3.18132 3.25765 3.27488 3.33992 3.45335 3.73417 4.21342 4.28632 4.56742 4.95122 5.09158 5.10438 5.11396 5.17266 5.39590 5.47683 5.60941 5.68147 5.70717 5.81488 5.97283 6.10776 6.18746 6.23187 6.30810 6.35678 6.47459 6.54991 6.62547 6.71402 6.76470 6.84789 6.97085 7.09183 7.32805 7.43258 7.62653 7.71843 7.76196 7.98845 8.54955 8.81053 9.22759 9.37988 10.82002 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.013210 B = 0.004983 C = 0.003913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2119.052713 B = 5618.019870 C = 7153.855414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.323 6.323 3 C 0.087 3.913 4 C -0.131 4.131 5 C -0.109 4.109 6 C 0.151 3.849 7 N -0.678 5.678 8 C 0.713 3.287 9 O -0.596 6.596 10 N -0.606 5.606 11 C 0.240 3.760 12 C -0.535 4.535 13 H 0.062 0.938 14 C 0.065 3.935 15 N -0.892 5.892 16 Si 0.896 3.104 17 H -0.272 1.272 18 H -0.282 1.282 19 H -0.283 1.283 20 C 0.165 3.835 21 C -0.166 4.166 22 C -0.164 4.164 23 C -0.122 4.122 24 C -0.185 4.185 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.094 0.906 28 H 0.127 0.873 29 H 0.172 0.828 30 H 0.414 0.586 31 H 0.039 0.961 32 H 0.028 0.972 33 H 0.265 0.735 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.048 0.952 37 H 0.054 0.946 38 H 0.049 0.951 39 H 0.057 0.943 40 H 0.068 0.932 41 H 0.127 0.873 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.374 -11.518 -3.290 12.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.237 6.237 3 C 0.042 3.958 4 C -0.151 4.151 5 C -0.129 4.129 6 C 0.055 3.945 7 N -0.325 5.325 8 C 0.416 3.584 9 O -0.478 6.478 10 N -0.340 5.340 11 C 0.120 3.880 12 C -0.574 4.574 13 H 0.081 0.919 14 C -0.138 4.138 15 N -0.531 5.531 16 Si 0.724 3.276 17 H -0.197 1.197 18 H -0.208 1.208 19 H -0.209 1.209 20 C 0.061 3.939 21 C -0.224 4.224 22 C -0.223 4.223 23 C -0.143 4.143 24 C -0.204 4.204 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.112 0.888 28 H 0.145 0.855 29 H 0.189 0.811 30 H 0.253 0.747 31 H 0.057 0.943 32 H 0.046 0.954 33 H 0.075 0.925 34 H 0.103 0.897 35 H 0.100 0.900 36 H 0.067 0.933 37 H 0.073 0.927 38 H 0.068 0.932 39 H 0.076 0.924 40 H 0.087 0.913 41 H 0.145 0.855 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -0.871 -12.101 -3.128 12.529 hybrid contribution -1.263 1.211 0.796 1.922 sum -2.134 -10.890 -2.332 11.339 Atomic orbital electron populations 1.22960 0.79169 1.03297 1.01171 1.86041 1.20742 1.27340 1.89606 1.18980 0.92405 0.83818 1.00618 1.20384 0.90887 0.98413 1.05373 1.21927 1.03130 0.89324 0.98505 1.17651 0.91006 0.85201 1.00691 1.42872 1.15779 1.09525 1.64371 1.15785 0.80694 0.84114 0.77845 1.90584 1.61865 1.36141 1.59229 1.47565 1.10610 1.05435 1.70385 1.19366 0.89939 0.81689 0.96977 1.21561 1.28649 1.11561 0.95602 0.91933 1.24941 0.96154 0.95879 0.96847 1.69923 1.37402 1.17471 1.28291 0.86455 0.79026 0.78431 0.83682 1.19674 1.20809 1.20857 1.20717 0.79459 0.99866 0.93897 1.22250 1.00070 1.03072 0.96994 1.22201 0.99030 1.02553 0.98488 1.20646 0.92672 0.97801 1.03206 1.20881 0.99458 0.91694 1.08384 0.92918 0.92954 0.88781 0.85508 0.81108 0.74735 0.94308 0.95443 0.92545 0.89702 0.90045 0.93312 0.92678 0.93174 0.92434 0.91288 0.85474 0.85700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.81 101.05 0.99 1.26 16 2 O -0.32 -4.33 10.50 -19.65 -0.21 -4.54 16 3 C 0.09 1.29 6.69 -39.23 -0.26 1.03 16 4 C -0.13 -2.04 9.98 -39.46 -0.39 -2.43 16 5 C -0.11 -1.88 8.88 -39.41 -0.35 -2.23 16 6 C 0.15 2.68 6.49 -83.61 -0.54 2.14 16 7 N -0.68 -12.87 5.23 -14.19 -0.07 -12.95 16 8 C 0.71 14.60 7.55 -86.92 -0.66 13.94 16 9 O -0.60 -12.47 9.47 5.29 0.05 -12.42 16 10 N -0.61 -12.41 2.41 -173.17 -0.42 -12.83 16 11 C 0.24 5.51 5.11 -5.19 -0.03 5.48 16 12 C -0.53 -13.69 9.39 -34.44 -0.32 -14.01 16 13 H 0.06 1.67 7.81 -52.48 -0.41 1.26 16 14 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 15 N -0.89 -23.97 13.29 55.43 0.74 -23.23 16 16 Si 0.90 20.49 29.54 -169.99 -5.02 15.47 16 17 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 18 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 19 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 20 C 0.16 2.98 3.27 -67.93 -0.22 2.76 16 21 C -0.17 -2.92 8.92 37.16 0.33 -2.59 16 22 C -0.16 -2.58 9.21 37.16 0.34 -2.24 16 23 C -0.12 -1.91 9.93 -39.41 -0.39 -2.31 16 24 C -0.18 -2.62 9.03 -39.46 -0.36 -2.97 16 25 H 0.05 0.45 7.66 -51.93 -0.40 0.05 16 26 H 0.05 0.43 7.66 -51.93 -0.40 0.03 16 27 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.13 1.74 8.06 -52.49 -0.42 1.32 16 29 H 0.17 3.16 5.24 -52.56 -0.28 2.89 16 30 H 0.41 7.73 6.46 -40.82 -0.26 7.46 16 31 H 0.04 0.93 7.95 -51.93 -0.41 0.52 16 32 H 0.03 0.64 6.04 -51.93 -0.31 0.33 16 33 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 34 H 0.08 1.53 7.82 -51.93 -0.41 1.12 16 35 H 0.08 1.54 5.98 -51.93 -0.31 1.23 16 36 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.07 1.18 6.59 -51.93 -0.34 0.84 16 41 H 0.13 1.85 8.06 -52.49 -0.42 1.43 16 42 H 0.13 1.43 6.29 -52.49 -0.33 1.10 16 LS Contribution 342.09 15.07 5.16 5.16 Total: -1.00 -28.29 342.09 -7.69 -35.98 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: -5.95 Total: 9.95 kcal Atomic # 6 Polarization: 1.38 SS G_CDS: -1.96 Total: -0.58 kcal Atomic # 7 Polarization: -49.25 SS G_CDS: 0.25 Total: -49.01 kcal Atomic # 8 Polarization: -16.80 SS G_CDS: -0.16 Total: -16.96 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -28.29 -7.69 -35.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042248766.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.883 kcal (2) G-P(sol) polarization free energy of solvation -28.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.16 seconds