Wall clock time and date at job start Tue Mar 31 2020 07:26:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35970 * 117.00222 * 2 1 4 4 C 1.38719 * 119.98862 * 180.02562 * 3 2 1 5 5 C 1.38093 * 120.01722 * 180.27322 * 4 3 2 6 6 C 1.38835 * 119.98549 * 359.47532 * 5 4 3 7 7 N 1.40150 * 120.01678 * 180.22717 * 6 5 4 8 8 C 1.34777 * 119.99908 * 336.20997 * 7 6 5 9 9 O 1.21583 * 120.00032 * 9.15989 * 8 7 6 10 10 N 1.34773 * 119.99766 * 189.15728 * 8 7 6 11 11 C 1.46498 * 120.00326 * 7.33616 * 10 8 7 12 12 C 1.50700 * 109.47369 * 89.99798 * 11 10 8 13 13 H 1.08003 * 119.99541 * 0.02562 * 12 11 10 14 14 C 1.37871 * 120.00269 * 180.02562 * 12 11 10 15 15 N 1.31510 * 120.00102 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00131 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47217 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47470 * 120.00102 * 16 14 12 19 19 H 1.48502 * 109.47164 * 240.00278 * 16 14 12 20 20 C 1.46509 * 119.99850 * 187.33504 * 10 8 7 21 21 C 1.52999 * 109.47148 * 303.13898 * 20 10 8 22 22 C 1.53000 * 109.46802 * 63.14280 * 20 10 8 23 23 C 1.38840 * 119.96978 * 0.54832 * 6 5 4 24 24 C 1.38099 * 119.98523 * 359.70379 * 23 6 5 25 25 H 1.08998 * 109.46907 * 300.00238 * 1 2 3 26 26 H 1.08997 * 109.46857 * 59.99357 * 1 2 3 27 27 H 1.09000 * 109.47367 * 179.97438 * 1 2 3 28 28 H 1.07998 * 119.99189 * 0.02562 * 4 3 2 29 29 H 1.08002 * 120.01038 * 179.72720 * 5 4 3 30 30 H 0.97004 * 119.99967 * 156.21158 * 7 6 5 31 31 H 1.08998 * 109.47412 * 209.99933 * 11 10 8 32 32 H 1.08995 * 109.46984 * 330.00035 * 11 10 8 33 33 H 0.97005 * 120.00398 * 180.02562 * 15 14 12 34 34 H 1.09005 * 109.46857 * 183.14192 * 20 10 8 35 35 H 1.09000 * 109.46881 * 65.97076 * 21 20 10 36 36 H 1.08995 * 109.47289 * 185.97073 * 21 20 10 37 37 H 1.09000 * 109.46679 * 305.97012 * 21 20 10 38 38 H 1.08997 * 109.47490 * 62.91647 * 22 20 10 39 39 H 1.09005 * 109.46496 * 182.91364 * 22 20 10 40 40 H 1.08994 * 109.46952 * 302.90948 * 22 20 10 41 41 H 1.07996 * 120.00641 * 179.68055 * 23 6 5 42 42 H 1.07998 * 119.99028 * 180.02562 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2115 0.0000 4 6 3.4317 1.2837 -0.0005 5 6 4.0593 2.5138 0.0052 6 6 3.3035 3.6784 0.0004 7 7 3.9398 4.9271 0.0014 8 6 5.1953 5.0433 0.4773 9 8 5.8367 4.0470 0.7500 10 7 5.7399 6.2638 0.6509 11 6 4.9182 7.4641 0.4771 12 6 4.2869 7.8359 1.7940 13 1 4.4790 7.2380 2.6727 14 6 3.4642 8.9391 1.8771 15 7 3.2299 9.6667 0.8070 16 14 2.6822 9.4002 3.5097 17 1 3.1009 8.4280 4.5512 18 1 3.1200 10.7643 3.9005 19 1 1.2035 9.3745 3.3751 20 6 7.1538 6.3903 1.0135 21 6 7.4203 5.6151 2.3054 22 6 8.0214 5.8214 -0.1109 23 6 1.9170 3.6055 0.0015 24 6 1.2906 2.3747 0.0010 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 4.0195 0.3778 -0.0014 29 1 5.1378 2.5699 0.0092 30 1 3.4765 5.7078 -0.3405 31 1 5.5442 8.2859 0.1295 32 1 4.1373 7.2665 -0.2572 33 1 2.6513 10.4432 0.8655 34 1 7.3976 7.4420 1.1640 35 1 7.2783 4.5495 2.1255 36 1 8.4443 5.7951 2.6325 37 1 6.7279 5.9485 3.0785 38 1 7.8702 6.4064 -1.0181 39 1 9.0707 5.8681 0.1808 40 1 7.7417 4.7844 -0.2964 41 1 1.3285 4.5110 0.0030 42 1 0.2121 2.3179 0.0014 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042248766.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:51 Heat of formation + Delta-G solvation = -45.310448 kcal Electronic energy + Delta-G solvation = -23770.273617 eV Core-core repulsion = 20329.726937 eV Total energy + Delta-G solvation = -3440.546680 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.82069 -40.70154 -38.66151 -36.97969 -35.73686 -34.74939 -32.84776 -31.98646 -29.87245 -28.80100 -27.97189 -27.82285 -24.96518 -23.84983 -23.80152 -22.33257 -20.62571 -19.11715 -18.73278 -18.52660 -18.11961 -16.94364 -16.57497 -16.45913 -16.44076 -16.01197 -15.59137 -15.28507 -14.62436 -14.58743 -14.49260 -14.21409 -13.91081 -13.81869 -13.65419 -13.48940 -13.22393 -12.93618 -12.80328 -12.77909 -12.57746 -12.32742 -12.12066 -12.09349 -11.88153 -11.70800 -11.63078 -10.88459 -10.65515 -10.36083 -9.91682 -9.46866 -8.51017 -8.21352 -6.36722 0.39937 0.47247 1.36870 1.41058 1.50898 1.80933 2.22106 2.39074 2.48251 2.91560 3.00374 3.08797 3.88456 4.00411 4.07427 4.30424 4.31648 4.42027 4.44151 4.45878 4.52487 4.65966 4.76280 4.76786 4.83998 4.94839 4.99561 5.04860 5.06022 5.10268 5.14758 5.26073 5.35843 5.44308 5.49218 5.62363 5.66687 5.91583 6.03285 6.04444 6.20294 6.52909 6.67383 7.05335 7.35748 7.66971 8.82189 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.013210 B = 0.004983 C = 0.003913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2119.052713 B = 5618.019870 C = 7153.855414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.334 6.334 3 C 0.092 3.908 4 C -0.138 4.138 5 C -0.119 4.119 6 C 0.122 3.878 7 N -0.679 5.679 8 C 0.706 3.294 9 O -0.604 6.604 10 N -0.611 5.611 11 C 0.255 3.745 12 C -0.543 4.543 13 H 0.046 0.954 14 C 0.026 3.974 15 N -0.916 5.916 16 Si 0.953 3.047 17 H -0.278 1.278 18 H -0.276 1.276 19 H -0.276 1.276 20 C 0.154 3.846 21 C -0.155 4.155 22 C -0.152 4.152 23 C -0.123 4.123 24 C -0.179 4.179 25 H 0.060 0.940 26 H 0.064 0.936 27 H 0.119 0.881 28 H 0.140 0.860 29 H 0.154 0.846 30 H 0.412 0.588 31 H 0.026 0.974 32 H 0.024 0.976 33 H 0.268 0.732 34 H 0.085 0.915 35 H 0.066 0.934 36 H 0.080 0.920 37 H 0.030 0.970 38 H 0.051 0.949 39 H 0.086 0.914 40 H 0.052 0.948 41 H 0.137 0.863 42 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.414 -12.331 -3.014 12.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.249 6.249 3 C 0.046 3.954 4 C -0.157 4.157 5 C -0.140 4.140 6 C 0.026 3.974 7 N -0.326 5.326 8 C 0.409 3.591 9 O -0.487 6.487 10 N -0.344 5.344 11 C 0.133 3.867 12 C -0.581 4.581 13 H 0.064 0.936 14 C -0.175 4.175 15 N -0.556 5.556 16 Si 0.779 3.221 17 H -0.203 1.203 18 H -0.202 1.202 19 H -0.202 1.202 20 C 0.050 3.950 21 C -0.213 4.213 22 C -0.210 4.210 23 C -0.144 4.144 24 C -0.198 4.198 25 H 0.079 0.921 26 H 0.083 0.917 27 H 0.138 0.862 28 H 0.158 0.842 29 H 0.172 0.828 30 H 0.251 0.749 31 H 0.044 0.956 32 H 0.042 0.958 33 H 0.077 0.923 34 H 0.103 0.897 35 H 0.085 0.915 36 H 0.099 0.901 37 H 0.049 0.951 38 H 0.070 0.930 39 H 0.105 0.895 40 H 0.071 0.929 41 H 0.155 0.845 42 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -1.919 -12.943 -2.857 13.393 hybrid contribution -1.007 1.337 0.696 1.813 sum -2.926 -11.606 -2.161 12.162 Atomic orbital electron populations 1.23323 0.76736 1.05461 1.02144 1.86040 1.23230 1.26412 1.89192 1.19066 0.92296 0.84746 0.99284 1.20510 0.91829 0.98158 1.05253 1.21759 1.02396 0.90129 0.99680 1.17904 0.92012 0.84669 1.02806 1.42838 1.15353 1.10110 1.64269 1.15941 0.81225 0.83954 0.78022 1.90587 1.62243 1.36173 1.59658 1.47582 1.11403 1.04724 1.70739 1.19029 0.89750 0.82188 0.95701 1.21672 1.28987 1.11496 0.95972 0.93617 1.25557 0.96550 0.95832 0.99531 1.69991 1.37977 1.17874 1.29712 0.85586 0.78397 0.78009 0.80131 1.20276 1.20200 1.20202 1.20976 0.78697 1.00197 0.95083 1.22139 1.01322 1.01798 0.96045 1.22081 1.00090 1.01196 0.97629 1.20829 0.91871 0.99003 1.02689 1.21189 1.01025 0.90678 1.06867 0.92087 0.91711 0.86245 0.84215 0.82848 0.74924 0.95590 0.95787 0.92253 0.89695 0.91486 0.90147 0.95052 0.92964 0.89545 0.92860 0.84527 0.82569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.81 113.37 1.11 1.38 16 2 O -0.33 -8.14 10.50 -93.21 -0.98 -9.12 16 3 C 0.09 2.56 6.69 22.50 0.15 2.71 16 4 C -0.14 -4.22 9.98 22.35 0.22 -4.00 16 5 C -0.12 -4.19 8.88 22.38 0.20 -3.99 16 6 C 0.12 4.37 6.49 38.10 0.25 4.61 16 7 N -0.68 -26.45 5.23 -317.07 -1.66 -28.11 16 8 C 0.71 29.70 7.55 179.06 1.35 31.06 16 9 O -0.60 -25.99 9.47 -3.98 -0.04 -26.03 16 10 N -0.61 -25.55 2.41 -820.05 -1.97 -27.52 16 11 C 0.25 11.92 5.11 85.63 0.44 12.36 16 12 C -0.54 -28.15 9.39 25.60 0.24 -27.91 16 13 H 0.05 2.49 7.81 -2.91 -0.02 2.47 16 14 C 0.03 1.35 5.46 84.65 0.46 1.81 16 15 N -0.92 -49.20 13.29 21.44 0.28 -48.91 16 16 Si 0.95 41.88 29.54 68.60 2.03 43.91 16 17 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 18 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 19 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 20 C 0.15 5.57 3.27 44.99 0.15 5.72 16 21 C -0.16 -5.44 8.92 71.98 0.64 -4.80 16 22 C -0.15 -4.65 9.21 71.98 0.66 -3.99 16 23 C -0.12 -3.75 9.93 22.38 0.22 -3.53 16 24 C -0.18 -4.67 9.03 22.35 0.20 -4.47 16 25 H 0.06 0.83 7.66 -2.39 -0.02 0.81 16 26 H 0.06 0.83 7.66 -2.39 -0.02 0.81 16 27 H 0.12 1.18 8.14 -2.39 -0.02 1.17 16 28 H 0.14 3.76 8.06 -2.91 -0.02 3.74 16 29 H 0.15 5.91 5.24 -4.04 -0.02 5.89 16 30 H 0.41 15.87 6.46 -92.71 -0.60 15.27 16 31 H 0.03 1.28 7.95 -2.39 -0.02 1.26 16 32 H 0.02 1.15 6.04 -2.39 -0.01 1.13 16 33 H 0.27 13.64 8.31 -92.70 -0.77 12.87 16 34 H 0.08 3.05 7.82 -2.38 -0.02 3.03 16 35 H 0.07 2.55 5.98 -2.39 -0.01 2.54 16 36 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 37 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.09 2.13 8.14 -2.38 -0.02 2.11 16 40 H 0.05 1.81 6.59 -2.39 -0.02 1.79 16 41 H 0.14 3.84 8.06 -2.91 -0.02 3.81 16 42 H 0.16 3.03 6.29 -2.91 -0.02 3.01 16 Total: -1.00 -60.46 342.09 4.39 -56.08 By element: Atomic # 1 Polarization: 32.32 SS G_CDS: 0.43 Total: 32.75 kcal Atomic # 6 Polarization: 0.66 SS G_CDS: 6.30 Total: 6.96 kcal Atomic # 7 Polarization: -101.19 SS G_CDS: -3.35 Total: -104.54 kcal Atomic # 8 Polarization: -34.14 SS G_CDS: -1.02 Total: -35.15 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.91 kcal Total: -60.46 4.39 -56.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042248766.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.765 kcal (2) G-P(sol) polarization free energy of solvation -60.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds